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Arch Biochem Biophys ; 606: 64-72, 2016 09 15.
Article in English | MEDLINE | ID: mdl-27424154

ABSTRACT

The exopolyphosphatase of Escherichia coli processively and completely hydrolyses long polyphosphate chains to ortho-phosphate. Genetic surveys, based on the analysis of single ppx(-) or ppk(-) mutants and on the double mutant, demonstrate a relationship between these genes and the survival capacity. The exopolyphosphatase belongs to the ASKHA protein superfamily, hence, its active site is well known; however, the knowledge of the way in which this enzyme binds polyP remains incomplete. Here we present different computational approaches, site-direct mutagenesis and kinetic data to understand the relationship between structure and function of exopolyphosphatase. We propose H(378) as a fundamental gatekeeper for the recognition of long chain polyphosphate.


Subject(s)
Acid Anhydride Hydrolases/chemistry , Bacterial Proteins/chemistry , Escherichia coli/metabolism , Binding Sites , Catalytic Domain , Hydrogen/chemistry , Kinetics , Molecular Conformation , Molecular Dynamics Simulation , Mutagenesis, Site-Directed , Mutation , Polyphosphates/chemistry , Protein Binding , Static Electricity , Thermodynamics
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