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1.
Angiogenesis ; 22(1): 133-144, 2019 02.
Article in English | MEDLINE | ID: mdl-30168023

ABSTRACT

Thrombospondin (TSP)-1 and TSP-2 share similar structures and functions, including a remarkable antiangiogenic activity. We have previously demonstrated that a mechanism of the antiangiogenic activity of TSP-1 is the interaction of its type III repeats domain with fibroblast growth factor-2 (FGF2), affecting the growth factor bioavailability and angiogenic activity. Since the type III repeats domain is conserved in TSP-2, this study aimed at investigating whether also TSP-2 retained the ability to interact with FGF2. The FGF2 binding properties of TSP-1 and TSP-2 and their recombinant domains were analyzed by solid-phase binding and surface plasmon resonance assays. TSP-2 bound FGF2 with high affinity (Kd = 1.3 nM). TSP-2/FGF2 binding was inhibited by calcium and heparin. The FGF2-binding domain of TSP-2 was located in the type III repeats and the minimal interacting sequence was identified as the GVTDEKD peptide in repeat 3C, corresponding to KIPDDRD, the active sequence of TSP-1. A second putative FGF2 binding sequence was also identified in repeat 11C of both TSPs. Computational docking analysis predicted that both the TSP-2 and TSP-1-derived heptapeptides interacted with FGF2 with comparable binding properties. Accordingly, small molecules based on the TSP-1 active sequence blocked TSP-2/FGF2 interaction. Binding of TSP-2 to FGF2 impaired the growth factor ability to interact with its cellular receptors, since TSP-2-derived fragments prevented the binding of FGF2 to both heparin (used as a structural analog of heparan sulfate proteoglycans) and FGFR-1. These findings identify TSP-2 as a new FGF2 ligand that shares with TSP-1 the same molecular requirements for interaction with the growth factor and a comparable capacity to block FGF2 interaction with proangiogenic receptors. These features likely contribute to TSP-2 antiangiogenic and antineoplastic activity, providing the rationale for future therapeutic applications.


Subject(s)
Fibroblast Growth Factor 2/chemistry , Surface Plasmon Resonance , Thrombospondins/chemistry , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/chemistry , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/metabolism , Fibroblast Growth Factor 2/metabolism , Humans , Protein Binding , Protein Domains , Repetitive Sequences, Amino Acid , Thrombospondins/metabolism
2.
J Phys Chem B ; 122(49): 11468-11477, 2018 12 13.
Article in English | MEDLINE | ID: mdl-30215522

ABSTRACT

Quenching of the triplet state of tryptophan by close contact with cysteine provides a tool for measuring the rate of intramolecular contact formation, one of the most elementary events in the folding process, in peptides and proteins using only natural probes. Here we present a study performed on a stabilized mutant of the second ß-hairpin of the GB1 domain, where we combine steady-state fluorescence, laser-induced temperature-jump, and contact formation measurements to unveil the role of elementary structural components on hairpin dynamics and overall stability. In particular, our methodology provides access to the conformational dynamics of both the folded and unfolded state of the hairpin under native conditions, revealing the presence of extremely slow dynamics on the microsecond time scale in the unfolded state and coexistence of structures with partial pairing of the tails in the folded state. Comparing model peptides that mimic the turn sequence, we found that both ion pairing and hydrogen bonding due to the threonine side chain contribute to the propensity of turn formation but not to the much slower dynamics of the hydrophobic core formation. Interestingly, the dynamics of the turn region in isolation are significantly faster than the dynamics measured for the unfolded state of the complete hairpin, suggesting that non-native hydrophobic contacts slow down the reconfiguration dynamics of the unfolded state. Overall, the information extracted from these experiments provides kinetic limits on interconversions among conformational populations, hence enabling a simplified multistate free-energy landscape for the GB1 hairpin to be drawn.


Subject(s)
Bacterial Proteins/chemistry , Cysteine/chemistry , Immunoglobulin G/chemistry , Molecular Dynamics Simulation , Tryptophan/chemistry , Fluorescence , Hydrophobic and Hydrophilic Interactions , Molecular Conformation , Streptococcus/chemistry , Temperature
3.
FASEB J ; 31(1): 192-202, 2017 01.
Article in English | MEDLINE | ID: mdl-27682206

ABSTRACT

Although α6-contaning (α6*) nicotinic acetylcholine receptors (nAChRs) are densely expressed in the visual system, their role is not well known. We have characterized a family of toxins that are antagonists for α6ß2* receptors and used one of these [RDP-MII(E11R)] to localize α6* nAChRs and investigate their impact on retinal function in adult Long-Evans rats. The α6*nAChRs in retinal tissue were localized using either a fluorescently tagged [RDP-MII(E11R)] or anti-α6-specific antibodies and found to be predominantly at the level of the ganglion cell layer. After intraocular injection of RDP-MII(E11R) in one eye and vehicle or inactive MII in contralateral eyes as controls, we recorded flash electroretinograms (F-ERGs), pattern ERGs (P-ERGs), and cortical visual-evoked potential (VEPs). There was no significant difference in F-ERG between the RDP-MII(E11R)-treated and control eyes. In contrast, P-ERG response amplitude was significantly reduced in the RDP-MII(E11R)-injected eye. Blocking α6* nAChRs at retinal level also decreased the VEP amplitude recorded in the visual cortex contralateral to the injected eye. Because both the cortical and inner retina output were affected by RDP-MII(E11R), whereas photoreceptor output was preserved, we conclude that the reduced visual response was due to an alteration in the function of α6* nAChRs present in the ganglion cell layer.-Barloscio, D., Cerri, E., Domenici, L., Longhi, R., Dallanoce, C., Moretti, M., Vilella, A., Zoli, M., Gotti, C., and Origlia, N. In vivo study of the role of α6-containing nicotinic acetylcholine receptor in retinal function using subtype-specific RDP-MII(E11R) toxin.


Subject(s)
Conotoxins/toxicity , Nicotinic Antagonists/toxicity , Receptors, Nicotinic/metabolism , Retina/physiology , Animals , Cerebral Cortex/physiology , Conotoxins/administration & dosage , Evoked Potentials, Visual/drug effects , Evoked Potentials, Visual/physiology , Male , Nicotinic Antagonists/administration & dosage , Rats , Rats, Long-Evans
4.
Gut ; 66(3): 454-463, 2017 03.
Article in English | MEDLINE | ID: mdl-26681737

ABSTRACT

OBJECTIVE: Patient-specific (unique) tumour antigens, encoded by somatically mutated cancer genes, generate neoepitopes that are implicated in the induction of tumour-controlling T cell responses. Recent advancements in massive DNA sequencing combined with robust T cell epitope predictions have allowed their systematic identification in several malignancies. DESIGN: We undertook the identification of unique neoepitopes in colorectal cancers (CRCs) by using high-throughput sequencing of cDNAs expressed by standard cancer cell cultures, and by related cancer stem/initiating cells (CSCs) cultures, coupled with a reverse immunology approach not requiring human leukocyte antigen (HLA) allele-specific epitope predictions. RESULTS: Several unique mutated antigens of CRC, shared by standard cancer and related CSC cultures, were identified by this strategy. CD8+ and CD4+ T cells, either autologous to the patient or derived from HLA-matched healthy donors, were readily expanded in vitro by peptides spanning different cancer mutations and specifically recognised differentiated cancer cells and CSC cultures, expressing the mutations. Neoepitope-specific CD8+ T cell frequency was also increased in a patient, compared with healthy donors, supporting the occurrence of clonal expansion in vivo. CONCLUSIONS: These results provide a proof-of-concept approach for the identification of unique neoepitopes that are immunogenic in patients with CRC and can also target T cells against the most aggressive CSC component.


Subject(s)
CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/immunology , Colorectal Neoplasms/genetics , Colorectal Neoplasms/immunology , DNA, Complementary/analysis , Epitopes, T-Lymphocyte/genetics , Adenomatous Polyposis Coli Protein/genetics , Cell Cycle Proteins/genetics , Class I Phosphatidylinositol 3-Kinases , DNA Mutational Analysis , Epitopes, T-Lymphocyte/immunology , F-Box Proteins/genetics , F-Box-WD Repeat-Containing Protein 7 , Gene Expression , HLA Antigens/genetics , HLA Antigens/immunology , High-Throughput Screening Assays , Humans , Neoplastic Stem Cells/immunology , Phosphatidylinositol 3-Kinases/genetics , Proto-Oncogene Proteins p21(ras)/genetics , Smad4 Protein/genetics , Smad4 Protein/immunology , Tumor Cells, Cultured , Tumor Suppressor Protein p53/genetics , Ubiquitin-Protein Ligases/genetics
5.
ACS Infect Dis ; 2(3): 221-30, 2016 03 11.
Article in English | MEDLINE | ID: mdl-27623032

ABSTRACT

Peptides seldom retain stable conformations if separated from their native protein structure. In an immunological context, this potentially affects the development of selective peptide-based bioprobes and, from a vaccine perspective, poses inherent limits in the elicitation of cross-reactive antibodies by candidate epitopes. Here, a 1,4-disubstituted-1,2,3-triazole-mediated stapling strategy was used to stabilize the native α-helical fold of the Pal3 peptidic epitope from the protein antigen PalBp (BPSL2765) from Burkholderia pseudomallei, the etiological agent of melioidosis. Whereas Pal3 shows no propensity to fold outside its native protein context, the engineered peptide (Pal3H) forms a stable α-helix, as assessed by MD, NMR, and CD structural analyses. Importantly, Pal3H shows an enhanced ability to discriminate between melioidosis patient subclasses in immune sera reactivity tests, demonstrating the potential of the stapled peptide for diagnostic purposes. With regard to antibody elicitation and related bactericidal activities, the linear peptide is shown to elicit a higher response. On these bases, we critically discuss the implications of epitope structure engineering for diagnostic- and vaccine-oriented applications.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Vaccines/chemistry , Burkholderia pseudomallei/immunology , Epitopes/chemistry , Melioidosis/diagnosis , Antibodies, Bacterial/immunology , Bacterial Proteins/genetics , Bacterial Proteins/immunology , Bacterial Vaccines/genetics , Bacterial Vaccines/immunology , Burkholderia pseudomallei/chemistry , Burkholderia pseudomallei/genetics , Crystallography, X-Ray , Epitopes/genetics , Epitopes/immunology , Humans , Melioidosis/immunology , Melioidosis/microbiology
6.
Sci Rep ; 6: 29699, 2016 07 14.
Article in English | MEDLINE | ID: mdl-27412504

ABSTRACT

B lymphocytes contribute to the pathogenesis of Multiple Sclerosis (MS) by secreting antibodies and producing cytokines. This latter function was analyzed in myelin olygodendrocyte protein (MOG)-stimulated CD19+ B lymphocytes of 71 MS patients with different disease phenotypes and 40 age-and sex-matched healthy controls (HC). Results showed that: 1) CD19+/TNFα+, CD19+/IL-12+ and CD19+/IFNγ+ lymphocytes are significantly increased in primary progressive (PP) compared to secondary progressive (SP), relapsing-remitting (RR), benign (BE) MS and HC; 2) CD19+/IL-6+ lymphocytes are significantly increased in PP, SP and RR compared to BEMS and HC; and 3) CD19+/IL-13+, CD19+/IL-10+, and CD19+/IL-10+/TGFß+ (Bregs) B lymphocytes are reduced overall in MS patients compared to HC. B cells expressing BTLA, a receptor whose binding to HVEM inhibits TcR-initiated cytokine production, as well as CD19+/BTLA+/IL-10+ cells were also significantly overall reduced in MS patients compared to HC. Analyses performed in RRMS showed that fingolimod-induced disease remission is associated with a significant increase in Bregs, CD19+/BTLA+, and CD19+/BTLA+/IL-10+ B lymphocytes. B lymphocytes participate to the pathogenesis of MS via the secretion of functionally-diverse cytokines that might play a role in determining disease phenotypes. The impairment of Bregs and CD19+/BTLA+ cells, in particular, could play an important pathogenic role in MS.


Subject(s)
Antigens, CD19/immunology , B-Lymphocytes, Regulatory/immunology , Multiple Sclerosis/immunology , Receptors, Immunologic/immunology , Adult , Antigens, CD19/metabolism , B-Lymphocytes, Regulatory/drug effects , B-Lymphocytes, Regulatory/metabolism , Cells, Cultured , Female , Fingolimod Hydrochloride/therapeutic use , Humans , Immunosuppressive Agents/therapeutic use , Interferon-gamma/immunology , Interferon-gamma/metabolism , Interleukin-10/genetics , Interleukin-10/immunology , Interleukin-10/metabolism , Interleukin-12/immunology , Interleukin-12/metabolism , Male , Middle Aged , Multiple Sclerosis/drug therapy , Multiple Sclerosis/metabolism , Receptors, Immunologic/metabolism , Severity of Illness Index , Transforming Growth Factor beta/genetics , Transforming Growth Factor beta/immunology , Transforming Growth Factor beta/metabolism , Tumor Necrosis Factor-alpha/immunology , Tumor Necrosis Factor-alpha/metabolism , Young Adult
7.
Biopolymers ; 106(5): 714-25, 2016 Sep.
Article in English | MEDLINE | ID: mdl-27272460

ABSTRACT

Human saliva contains hundreds of small proline-rich peptides originated by the proteolytic cleavage of the salivary basic Proline-Rich Proteins. Nevertheless only for few of them a specific biological activity has been assigned to date. Among them, the 1932 Da peptide (p1932) has been patented as an anti-HIV agent. In order to shed light on the possible mechanism of action of this peptide, we assessed in this study, by means of molecular dynamics calculations, circular dichroism and FTIR spectroscopic techniques, that p1932 has an intrinsic propensity to adopt a polyproline-II helix arrangement. This structural feature combined with the presence of PxxP motifs in its primary structure, represents an essential property for the exploitation of several biological activities. Next to these findings, we recently demonstrated the ability of this peptide to be internalized within cells of the oral mucosa, thus we focused onto a possible intracellular target, represented by the SH3 domains family. Its ability to interact with selected SH3 domains was finally assayed by Surface Plasmon Resonance spectroscopy. As a result, only Fyn, Hck, and c-Src SH3 domains gave positive results in terms of interaction, showing dissociation constants ranging from nanomolar to micromolar values having the best performer a KD of 148 nM. It is noteworthy that all the interacting domains belong to the Src kinases family, suggesting a role for p1932 as a modulator of the signal transduction pathways mediated by these kinases. © 2016 Wiley Periodicals, Inc. Biopolymers (Pept Sci) 106: 714-725, 2016.


Subject(s)
Anti-HIV Agents/chemistry , Antimicrobial Cationic Peptides/chemistry , Molecular Dynamics Simulation , Salivary Proline-Rich Proteins/chemistry , src Homology Domains , Humans , Surface Plasmon Resonance
8.
PLoS One ; 11(1): e0147925, 2016.
Article in English | MEDLINE | ID: mdl-26814504

ABSTRACT

A salivary proline-rich peptide of 1932 Da showed a dose-dependent antagonistic effect on the cytosolic Ca2+ mobilization induced by progesterone in a tongue squamous carcinoma cell line. Structure-activity studies showed that the activity of the peptide resides in the C-terminal region characterized by a proline stretch flanked by basic residues. Furthermore, lack of activity of the retro-inverso peptide analogue suggested the involvement of stereospecific recognition. Mass spectrometry-based shotgun analysis, combined with Western blotting tests and biochemical data obtained with the Progesterone Receptor Membrane Component 1 (PGRMC1) inhibitor AG205, showed strong evidence that p1932 performs its modulatory action through an interaction with the progesterone receptor PGRMC1, which is predominantly expressed in this cell line and, clearly, plays a role in progesterone induced Ca2+ response. Thus, our results point to p1932 as a modulator of the transduction signal pathway mediated by this protein and, given a well-established involvement of PGRMC1 in tumorigenesis, highlight a possible therapeutic potential of p1932 for the treatment of oral cancer.


Subject(s)
Calcium/metabolism , Peptides/metabolism , Progesterone/pharmacology , Salivary Glands/metabolism , Signal Transduction/drug effects , Amino Acid Sequence , Carcinoma, Squamous Cell/metabolism , Carcinoma, Squamous Cell/pathology , Cell Line, Tumor , Chromatography, High Pressure Liquid , Cytosol/metabolism , Humans , Ions/chemistry , Membrane Proteins/antagonists & inhibitors , Membrane Proteins/metabolism , Molecular Sequence Data , Mouth Neoplasms/metabolism , Mouth Neoplasms/pathology , Peptides/chemical synthesis , Peptides/chemistry , Progestins/pharmacology , Proline-Rich Protein Domains , Protein Binding , Receptors, Progesterone/antagonists & inhibitors , Receptors, Progesterone/metabolism , Spectrometry, Mass, Electrospray Ionization
9.
Methods Mol Biol ; 1352: 145-56, 2016.
Article in English | MEDLINE | ID: mdl-26490473

ABSTRACT

Ordered and reproducible bioprobe immobilization onto sensor surfaces is a critical step in the development of reliable analytical devices. A growing awareness of the impact of the immobilization scheme on the consistency of the generated data is driving the demand for chemoselective approaches to immobilize biofunctional ligands, such as peptides, in a predetermined and uniform fashion. Herein, the most intriguing strategies to selective and oriented peptide immobilization are described and discussed. The aim of the current work is to provide the reader a general picture on recent advances made in this field, highlighting the potential associated with each chemoselective strategy. Case studies are described to provide illustrative examples, and cross-references to more topic-focused and exhaustive reviews are proposed throughout the text.


Subject(s)
Immobilized Proteins/chemistry , Molecular Probes/chemistry , Peptides/chemistry , Protein Array Analysis/methods , Proteins/chemistry , Alkynes/chemistry , Azides/chemistry , Click Chemistry , Immobilized Proteins/metabolism , Oximes/chemistry , Peptides/metabolism , Proteins/metabolism , Sulfhydryl Compounds/chemistry
10.
Biochim Biophys Acta ; 1848(11 Pt A): 2868-77, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26325345

ABSTRACT

Saliva contains hundreds of small proline-rich peptides most of which derive from the post-translational and post-secretory processing of the acidic and basic salivary proline-rich proteins. Among these peptides we found that a 20 residue proline-rich peptide (p1932), commonly present in human saliva and patented for its antiviral activity, was internalized within cells of the oral mucosa. The cell-penetrating properties of p1932 have been studied in a primary gingival fibroblast cell line and in a squamous cancer cell line, and compared to its retro-inverso form. We observed by mass-spectrometry, flow cytometry and confocal microscopy that both peptides were internalized in the two cell lines on a time scale of minutes, being the natural form more efficient than the retro-inverso one. The cytosolic localization was dependent on the cell type: both peptide forms were able to localize within nuclei of tumoral cells, but not in the nuclei of gingival fibroblasts. The uptake was shown to be dependent on the culture conditions used: peptide internalization was indeed effective in a complete medium than in a serum-free one allowing the hypothesis that the internalization could be dependent on the cell cycle. Both peptides were internalized likely by a lipid raft-mediated endocytosis mechanism as suggested by the reduced uptake in the presence of methyl-ß-cyclodextrin. These results suggest that the natural peptide may play a role within the cells of the oral mucosa after its secretion and subsequent internalization. Furthermore, lack of cytotoxicity of both peptide forms highlights their possible application as novel drug delivery agents.


Subject(s)
Cell-Penetrating Peptides/metabolism , Endocytosis/physiology , Peptides/metabolism , Salivary Proline-Rich Proteins/metabolism , Cell Line, Tumor , Cell Survival/drug effects , Cell-Penetrating Peptides/pharmacokinetics , Cell-Penetrating Peptides/pharmacology , Cells, Cultured , Culture Media/pharmacology , Culture Media, Serum-Free/pharmacology , Endocytosis/drug effects , Fibroblasts/metabolism , Flow Cytometry , Gingiva/cytology , Humans , Microscopy, Confocal , Peptides/pharmacokinetics , Peptides/pharmacology , Salivary Proline-Rich Proteins/pharmacokinetics , Salivary Proline-Rich Proteins/pharmacology , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , beta-Cyclodextrins/pharmacology
11.
Biomaterials ; 68: 89-99, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26276694

ABSTRACT

Selective tumor targeting is expected to enhance drug delivery and to decrease toxicity, resulting in an improved therapeutic index. We have recently identified the HSYWLRS peptide sequence as a specific ligand for aggressive neuroblastoma, a childhood tumor mostly refractory to current therapies. Here we validated the specific binding of HSYWLRS to neuroblastoma cell suspensions obtained either from cell lines, animal models, or Schwannian-stroma poor, stage IV neuroblastoma patients. Binding of the biotinylated peptide and of HSYWLRS-functionalized fluorescent quantum dots or liposomal nanoparticles was dose-dependent and inhibited by an excess of free peptide. In animal models obtained by the orthotopic implant of either MYCN-amplified or MYCN single copy human neuroblastoma cell lines, treatment with HSYWLRS-targeted, doxorubicin-loaded Stealth Liposomes increased tumor vascular permeability and perfusion, enhancing tumor penetration of the drug. This formulation proved to exert a potent antitumor efficacy, as evaluated by bioluminescence imaging and micro-PET, leading to (i) delay of tumor growth paralleled by decreased tumor glucose consumption, and (ii) abrogation of metastatic spreading, accompanied by absence of systemic toxicity and significant increase in the animal life span. Our findings are functional to the design of targeted nanocarriers with potentiated therapeutic efficacy towards the clinical translation.


Subject(s)
Doxorubicin/administration & dosage , Nanocapsules/administration & dosage , Neoplasm Metastasis/prevention & control , Neuroblastoma/chemistry , Neuroblastoma/drug therapy , Animals , Antibiotics, Antineoplastic/administration & dosage , Antibiotics, Antineoplastic/chemistry , Cell Line, Tumor , Cell Proliferation/drug effects , Cell Survival/drug effects , Diffusion , Doxorubicin/chemistry , Drug Synergism , Female , Mice , Mice, Nude , Nanocapsules/chemistry , Neoplasm Invasiveness , Neoplasm Metastasis/pathology , Neuroblastoma/pathology
12.
J Allergy Clin Immunol ; 136(2): 413-22, 2015 Aug.
Article in English | MEDLINE | ID: mdl-26014813

ABSTRACT

BACKGROUND: Thymic stromal lymphopoietin (TSLP) is a cytokine with pleiotropic functions in the immune system. It has been associated with allergic reactions in the skin and lungs but also homeostatic tolerogenic responses in the thymus and gut. OBJECTIVE: In human subjects TSLP is present in 2 isoforms, short and long. Here we wanted to investigate the differential expression of the TSLP isoforms and discern their biological implications under homeostatic or inflammatory conditions. METHODS: We evaluated the expression of TSLPs in tissues from healthy subjects, patients with ulcerative colitis, patients with celiac disease, and patients with atopic dermatitis and on epithelial cells and keratinocytes under steady-state conditions or after stimulation. We then tested the immune activity of TSLP isoforms both in vitro and in vivo. RESULTS: We showed that TSLP isoforms are responsible for 2 opposite immune functions. The short isoform is expressed under steady-state conditions and exerts anti-inflammatory activities by affecting the capacity of PBMCs and dendritic cells to produce inflammatory cytokines. Moreover, the short isoform TSLP ameliorates experimental colitis in mice and prevents endotoxin shock. The long isoform of TSLP is proinflammatory and is only expressed during inflammation. The isoforms are differentially regulated by pathogenic bacteria, such as Salmonella species and adhesive-invasive Escherichia coli. CONCLUSIONS: We have solved the dilemma of TSLP being both homeostatic and inflammatory. The TSLP isoform ratio is altered during several inflammatory disorders, with strong implications in disease treatment and prevention. Indeed, targeting of the long isoform of TSLP at the C-terminal portion, which is common to both isoforms, might lead to unwanted side effects caused by neutralization of the homeostatic short isoform.


Subject(s)
Celiac Disease/immunology , Colitis, Ulcerative/immunology , Cytokines/immunology , Dermatitis, Atopic/immunology , Intestines/immunology , Skin/immunology , Animals , Case-Control Studies , Celiac Disease/genetics , Celiac Disease/microbiology , Celiac Disease/pathology , Colitis, Ulcerative/genetics , Colitis, Ulcerative/microbiology , Colitis, Ulcerative/pathology , Cytokines/genetics , Dendritic Cells/immunology , Dendritic Cells/microbiology , Dendritic Cells/pathology , Dermatitis, Atopic/genetics , Dermatitis, Atopic/microbiology , Dermatitis, Atopic/pathology , Disease Models, Animal , Escherichia coli/immunology , Escherichia coli Infections/genetics , Escherichia coli Infections/immunology , Escherichia coli Infections/microbiology , Escherichia coli Infections/pathology , Female , Gene Expression Regulation/immunology , Humans , Intestines/microbiology , Intestines/pathology , Leukocytes, Mononuclear/immunology , Leukocytes, Mononuclear/microbiology , Leukocytes, Mononuclear/pathology , Mice , Protein Isoforms/genetics , Protein Isoforms/immunology , Salmonella/immunology , Salmonella Infections/genetics , Salmonella Infections/immunology , Salmonella Infections/microbiology , Salmonella Infections/pathology , Skin/microbiology , Skin/pathology , Thymic Stromal Lymphopoietin
13.
Angew Chem Int Ed Engl ; 54(4): 1361-4, 2015 Jan 19.
Article in English | MEDLINE | ID: mdl-25483297

ABSTRACT

The design of disulfide bond mimetics is an important strategy for optimising cysteine-rich peptides in drug development. Mimetics of the drug lead conotoxin MrIA, in which one disulfide bond is selectively replaced of by a 1,4-disubstituted-1,2,3-triazole bridge, are described. Sequential copper-catalyzed azide-alkyne cycloaddition (CuAAC; click reaction) followed by disulfide formation resulted in the regioselective syntheses of triazole-disulfide hybrid MrIA analogues. Mimetics with a triazole replacing the Cys4-Cys13 disulfide bond retained tertiary structure and full in vitro and in vivo activity as norepinephrine reuptake inhibitors. Importantly, these mimetics are resistant to reduction in the presence of glutathione, thus resulting in improved plasma stability and increased suitability for drug development.


Subject(s)
Conotoxins/chemistry , Cysteine/chemistry , Disulfides/chemistry , Triazoles/chemistry , Amino Acid Sequence , Click Chemistry , Conotoxins/metabolism , Drug Design , Norepinephrine Plasma Membrane Transport Proteins/antagonists & inhibitors , Norepinephrine Plasma Membrane Transport Proteins/metabolism , Peptidomimetics , Structure-Activity Relationship
14.
Bioconjug Chem ; 25(8): 1381-6, 2014 Aug 20.
Article in English | MEDLINE | ID: mdl-25080049

ABSTRACT

The functionalization of colloidal nanoparticles with short peptides often fails in achieving satisfactory targeting efficiency and selectivity toward receptor-specific human cells. Here, we show that an optimized passivation of gold nanoparticle surface with a mixed self-assembled monolayer, including a targeting ligand, a fluorescent dye, and an intercalating short PEG derivative, led to a very stable, nontoxic, and efficient nanoconjugate for targeting urokinase plasminogen activator receptor-positive breast cancer cells.


Subject(s)
Breast Neoplasms/pathology , Gold/chemistry , Metal Nanoparticles/chemistry , Molecular Targeted Therapy , Oligopeptides/chemistry , Oligopeptides/metabolism , Receptors, Urokinase Plasminogen Activator/metabolism , Amino Acid Sequence , Breast Neoplasms/drug therapy , Cell Line, Tumor , Drug Design , Fluorescent Dyes/chemistry , Humans , Ligands , Models, Molecular , Molecular Conformation , Polyethylene Glycols/chemistry , Substrate Specificity
15.
Proc Natl Acad Sci U S A ; 111(9): 3561-6, 2014 Mar 04.
Article in English | MEDLINE | ID: mdl-24501120

ABSTRACT

The α-proteobacterium Sinorhizobium meliloti establishes a chronic intracellular infection during the symbiosis with its legume hosts. Within specialized host cells, S. meliloti differentiates into highly polyploid, enlarged nitrogen-fixing bacteroids. This differentiation is driven by host cells through the production of defensin-like peptides called "nodule-specific cysteine-rich" (NCR) peptides. Recent research has shown that synthesized NCR peptides exhibit antimicrobial activity at high concentrations but cause bacterial endoreduplication at sublethal concentrations. We leveraged synchronized S. meliloti populations to determine how treatment with a sublethal NCR peptide affects the cell cycle and physiology of bacteria at the molecular level. We found that at sublethal levels a representative NCR peptide specifically blocks cell division and antagonizes Z-ring function. Gene-expression profiling revealed that the cell division block was produced, in part, through the substantial transcriptional response elicited by sublethal NCR treatment that affected ∼15% of the genome. Expression of critical cell-cycle regulators, including ctrA, and cell division genes, including genes required for Z-ring function, were greatly attenuated in NCR-treated cells. In addition, our experiments identified important symbiosis functions and stress responses that are induced by sublethal levels of NCR peptides and other antimicrobial peptides. Several of these stress-response pathways also are found in related α-proteobacterial pathogens and might be used by S. meliloti to sense host cues during infection. Our data suggest a model in which, in addition to provoking stress responses, NCR peptides target intracellular regulatory pathways to drive S. meliloti endoreduplication and differentiation during symbiosis.


Subject(s)
Cell Cycle/physiology , Fabaceae/microbiology , Gene Expression Regulation, Plant/physiology , Intercellular Signaling Peptides and Proteins/metabolism , Sinorhizobium meliloti/physiology , Symbiosis , DNA, Complementary/genetics , Fabaceae/metabolism , Gene Expression Profiling , Microarray Analysis , Models, Biological , Polymerase Chain Reaction , Root Nodules, Plant/metabolism , Root Nodules, Plant/microbiology , Sinorhizobium meliloti/metabolism
16.
Chem Biol ; 20(9): 1147-56, 2013 Sep 19.
Article in English | MEDLINE | ID: mdl-23993463

ABSTRACT

We solved the crystal structure of Burkholderia pseudomallei acute phase antigen BPSL2765 in the context of a structural vaccinology study, in the area of melioidosis vaccine development. Based on the structure, we applied a recently developed method for epitope design that combines computational epitope predictions with in vitro mapping experiments and successfully identified a consensus sequence within the antigen that, when engineered as a synthetic peptide, was selectively immunorecognized to the same extent as the recombinant protein in sera from melioidosis-affected subjects. Antibodies raised against the consensus peptide were successfully tested in opsonization bacterial killing experiments and antibody-dependent agglutination tests of B. pseudomallei. Our strategy represents a step in the development of immunodiagnostics, in the production of specific antibodies and in the optimization of antigens for vaccine development, starting from structural and physicochemical principles.


Subject(s)
Antigens, Bacterial/chemistry , Bacterial Proteins/chemistry , Bacterial Vaccines/immunology , Burkholderia pseudomallei/immunology , Epitopes/chemistry , Antibodies/blood , Antibodies/immunology , Antigens, Bacterial/immunology , Antigens, Bacterial/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/immunology , Burkholderia pseudomallei/metabolism , Crystallography, X-Ray , Epitope Mapping , Epitopes/immunology , Epitopes/metabolism , Humans , Molecular Dynamics Simulation , Neutrophils/cytology , Neutrophils/immunology , Phagocytosis , Protein Structure, Tertiary , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/immunology
17.
Electrophoresis ; 34(18): 2674-82, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23857244

ABSTRACT

Thymosin ß4 (Tß4) is a peptide present in almost any tissue and in extracellular media in mammals, having multiple amazing functions as wound healing, stimulation of angiogenesis, and suppression of inflammation. This study describes its determination in saliva through CE-MS using multiple ions monitoring scan mode by isolating the four most intense multicharged ions present in the MS spectra of the peptide. This scan modality, by reducing the baseline noise and interferences, increases the sensitivity and specificity in biological matrices. The CE-MS separation was optimized by studying different parameters influencing CE analysis, sample injection, and MS ionization, that is, the nebulizer gas flow, the sheath liquid, and BGE composition. The proposed technique can unambiguously identify in short time Tß4 in saliva after a very fast and reduced sample pretreatment procedure. The method was validated for quantitation showing linearity of the response in the range 0.25 (lower limit of quantification) to 4 µM (average R2 0.996 ± 0.005) and intra- and interassay precision and accuracy at three different concentrations with RSD values in the range of 7­16%. It was successfully applied to the analysis of Tß4 in whole saliva showing a variable peptide content from individual to individual (in the range of 0.3­1.4 µM) and in different days from the same individual. CE-MS in multiple ions monitoring scan mode provides a fast, selective, and economic method requiring only very few microliters of sample.


Subject(s)
Electrophoresis, Capillary/methods , Mass Spectrometry/methods , Saliva/chemistry , Thymosin/analysis , Adult , Aged , Amino Acid Sequence , Female , Humans , Linear Models , Male , Middle Aged , Molecular Sequence Data , Reproducibility of Results , Sensitivity and Specificity
18.
Amino Acids ; 45(2): 257-68, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23744401

ABSTRACT

The development of new vaccines remains an attractive goal for disease prevention and therapy, in combination or alternative to drug-based treatment. In parallel, a growing awareness of the importance of early diagnosis in successful disease management is driving the demand for new reliable diagnostic tools. As a consequence, over the last decades an impressive amount of work has been directed toward the search for new solutions to address vaccine design and biomarker discovery. In this context, peptides have generated considerable interest thanks to their general accessibility and ease of manipulation. The aim of this review is to provide the reader a general picture of the traditional peptide-based strategies adopted in immunology and to report on recent advances made in this field, highlighting advantages and limitations of classic versus innovative approaches. Case studies are described to provide illustrative examples, and cross references to more topic-focused and exhaustive reviews are proposed throughout the text.


Subject(s)
Drug Design , Peptides/immunology , Vaccines, Subunit/immunology , Biomarkers , Early Diagnosis , Humans , Peptides/chemistry
19.
PLoS One ; 8(6): e64183, 2013.
Article in English | MEDLINE | ID: mdl-23755116

ABSTRACT

Ghrelin is a hormone with a crucial role in the regulation of appetite, regulation of inflammation, glucose metabolism and cell proliferation. In the brain ghrelin neurons are located in the cortex (sensorimotor area, cingular gyrus), and the fibres of ghrelin neurons in hypothalamus project directly to the dorsal vagal complex (DVC). Ghrelin binds the growth hormone secretagogue receptor (GHS-R) a G-protein-coupled receptor with a widespread tissue distribution, indeed these receptors are localized both in nonnervous, organs/tissues (i.e. adipose tissue, myocardium, adrenals, gonads, lung, liver, arteries, stomach, pancreas, thyroid, and kidney) as well as in central nervous system (CNS) and higher levels of expression in the pituitary gland and the hypothalamus and lower levels of expression in other organs, including brain. A GHS-R specific monoclonal antibody has been developed and characterized and through it we demonstrate that GHS-R is expressed in primary neurons and that its expression is dependent upon their developmental stage and shows differences according to the brain region involved, with a more pronounced expression in hippocampal rather than cortical neurons. A characterization of GHS-R within the central nervous system is of extreme importance in order to gain insights on its role in the modulation of neurodegenerative events such as Alzheimer's disease.


Subject(s)
Cerebral Cortex/cytology , Hippocampus/cytology , Neurons/metabolism , Receptors, Ghrelin/metabolism , Animals , Antibodies, Monoclonal, Murine-Derived/biosynthesis , Antibodies, Monoclonal, Murine-Derived/chemistry , Antibody Specificity , Fluorescent Antibody Technique, Indirect , Humans , Hybridomas , Immunoprecipitation , Male , Mice , Organ Specificity , Primary Cell Culture , Rats
20.
J Control Release ; 170(2): 233-41, 2013 Sep 10.
Article in English | MEDLINE | ID: mdl-23714122

ABSTRACT

Molecular targeting of drug delivery nanocarriers is expected to improve their therapeutic index while decreasing their toxicity. Here we report the identification and characterization of novel peptide ligands specific for cells present in high-risk neuroblastoma (NB), a childhood tumor mostly refractory to current therapies. To isolate such targeting moieties, we performed combined in vitro/ex-vivo phage display screenings on NB cell lines and on tumors derived from orthotopic mouse models of human NB. By designing proper subtractive protocols, we identified phage clones specific either for the primary tumor, its metastases, or for their respective stromal components. Globally, we isolated 121 phage-displayed NB-binding peptides: 26 bound the primary tumor, 15 the metastatic mass, 57 and 23 their respective microenvironments. Of these, five phage clones were further validated for their specific binding ex-vivo to biopsies from stage IV NB patients and to NB tumors derived from mice. All five clones also targeted tumor cells and vasculature in vivo when injected into NB-bearing mice. Coupling of the corresponding targeting peptides with doxorubicin-loaded liposomes led to a significant inhibition in tumor volume and enhanced survival in preclinical NB models, thereby paving the way to their clinical development.


Subject(s)
Doxorubicin/administration & dosage , Nanoparticles/administration & dosage , Neuroblastoma/drug therapy , Peptides/administration & dosage , Animals , Cell Line, Tumor , Cell Surface Display Techniques , Cell Survival/drug effects , Cells, Cultured , Doxorubicin/chemistry , Female , Human Umbilical Vein Endothelial Cells , Humans , Liposomes , Mice , Mice, Nude , Nanoparticles/chemistry , Neuroblastoma/pathology , Peptides/chemistry , Peptides/pharmacokinetics , Tumor Burden/drug effects , Xenograft Model Antitumor Assays
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