Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 33
Filter
Add more filters










Publication year range
1.
Cells ; 9(4)2020 04 17.
Article in English | MEDLINE | ID: mdl-32316379

ABSTRACT

Cellular senescence, induced by genotoxic or replication stress, is accompanied by defects in nuclear morphology and nuclear membrane-heterochromatin disruption. In this work, we analyzed cytological and molecular changes in the linker of nucleoskeleton and cytoskeleton (LINC) complex proteins in senescence triggered by γ-irradiation. We used human mammary carcinoma and osteosarcoma cell lines, both original and shRNA knockdown clones targeting lamin B receptor (LBR) and leading to LBR and lamin B (LB1) reduction. The expression status and integrity of LINC complex proteins (nesprin-1, SUN1, SUN2), lamin A/C, and emerin were analyzed by immunodetection using confocal microscopy and Western blot. The results show frequent mislocalization of these proteins from the nuclear membrane to cytoplasm and micronuclei and, in some cases, their fragmentation and amplification. The timing of these changes clearly preceded the onset of senescence. The LBR deficiency triggered neither senescence nor changes in the LINC protein distribution before irradiation. However, the cytological changes following irradiation were more pronounced in shRNA knockdown cells compared to original cell lines. We conclude that mislocalization of LINC complex proteins is a significant characteristic of cellular senescence phenotypes and may influence complex events at the nuclear membrane, including trafficking and heterochromatin attachment.


Subject(s)
Cellular Senescence/genetics , Gamma Rays/therapeutic use , Membrane Proteins/metabolism , Nuclear Envelope/metabolism , Receptors, Cytoplasmic and Nuclear/genetics , Humans , Spatio-Temporal Analysis , Lamin B Receptor
2.
FEBS Open Bio ; 9(5): 870-890, 2019 05.
Article in English | MEDLINE | ID: mdl-30982228

ABSTRACT

Replication stress (RS) is a major driver of genomic instability and tumorigenesis. Here, we investigated whether RS induced by the nucleotide analog fludarabine and specific kinase inhibitors [e.g. targeting checkpoint kinase 1 (Chk1) or ataxia telangiectasia and Rad3-related (ATR)] led to apoptosis or senescence in four cancer cell lines differing in TP53 mutation status and expression of lamin A/C (LA/C). RS resulted in uneven chromatin condensation in all cell types, as evidenced by the presence of metaphasic chromosomes with unrepaired DNA damage, as well as detection of less condensed chromatin in the same nucleus, frequent ultrafine anaphase bridges, and micronuclei. We observed that responses to these chromatin changes may be distinct in individual cell types, suggesting that expression of lamin A/C and lamin B1 (LB1) may play an important role in the transition of damaged cells to senescence. MCF7 mammary carcinoma cells harboring wild-type p53 (WT-p53) and LA/C responded to RS by transition to senescence with a significant reduction of lamin B receptor and LB1 proteins. In contrast, a lymphoid cancer cell line WSU-NHL (WT-p53) lacking LA/C and expressing low levels of LB1 died after several hours, while lines MEC-1 and SU-DHL-4, both with mutated p53, and SU-DHL-4 with mutations in LA/C, died at different rates by apoptosis. Our results show that, in addition to being influenced by p53 mutation status, the response to RS (apoptosis or senescence) may also be influenced by lamin A/C and LB1 status.


Subject(s)
Apoptosis/physiology , Cellular Senescence/physiology , DNA Replication/physiology , Cell Line, Tumor , Humans , Lamin Type A/metabolism , MCF-7 Cells , Mutation , Tumor Suppressor Protein p53/genetics , Vidarabine/analogs & derivatives , Vidarabine/pharmacology
3.
Cells ; 7(2)2018 Feb 06.
Article in English | MEDLINE | ID: mdl-29415520

ABSTRACT

Anchoring of heterochromatin to the nuclear envelope appears to be an important process ensuring the spatial organization of the chromatin structure and genome function in eukaryotic nuclei. Proteins of the inner nuclear membrane (INM) mediating these interactions are able to recognize lamina-associated heterochromatin domains (termed LAD) and simultaneously bind either lamin A/C or lamin B1. One of these proteins is the lamin B receptor (LBR) that binds lamin B1 and tethers heterochromatin to the INM in embryonic and undifferentiated cells. It is replaced by lamin A/C with specific lamin A/C binding proteins at the beginning of cell differentiation and in differentiated cells. Our functional experiments in cancer cell lines show that heterochromatin in cancer cells is tethered to the INM by LBR, which is downregulated together with lamin B1 at the onset of cell transition to senescence. The downregulation of these proteins in senescent cells leads to the detachment of centromeric repetitive sequences from INM, their relocation to the nucleoplasm, and distension. In cells, the expression of LBR and LB1 is highly coordinated as evidenced by the reduction of both proteins in LBR shRNA lines. The loss of the constitutive heterochromatin structure containing LADs results in changes in chromatin architecture and genome function and can be the reason for the permanent loss of cell proliferation in senescence.

4.
Biochem J ; 474(2): 281-300, 2017 01 15.
Article in English | MEDLINE | ID: mdl-27760841

ABSTRACT

Cellular transition to senescence is associated with extensive chromatin reorganization and changes in gene expression. Recent studies appear to imply an association of lamin B1 (LB1) reduction with chromatin rearrangement in human fibroblasts promoted to senescence, while the mechanisms and structural features of these relationships have not yet been clarified. In this work, we examined the functions of LB1 and the lamin B receptor (LBR) in human cancer cells. We found that both LB1 and LBR tend to deplete during cancer cell transfer to senescence by γ-irradiation. A functional study employing silencing of LBR by small hairpin ribonucleic acid (shRNA) constructs revealed reduced LB1 levels suggesting that the regulation of both proteins is interrelated. The reduced expression of LBR resulted in the relocation of centromeric heterochromatin (CSH) from the inner nuclear membrane (INM) to the nucleoplasm and is associated with its unfolding. This indicates that LBR tethers heterochromatin to INM in cycling cancer cells and that LB1 is an integral part of this tethering. Down-regulation of LBR and LB1 at the onset of senescence are thus necessary for the release of heterochromatin binding to lamina, resulting in changes in chromatin architecture and gene expression. However, the senescence phenotype was not manifested in cell lines with reduced LBR and LB1 expression suggesting that other factors, such as deoxyribonucleic acid (DNA) damage, are needed to trigger senescence. We conclude that the primary response of cells to various stresses leading to senescence consists of the down-regulation of LBR and LB1 to attain reversal of the chromatin architecture.


Subject(s)
Gene Expression Regulation, Neoplastic , Heterochromatin/metabolism , Lamin Type B/genetics , Osteoblasts/metabolism , Receptors, Cytoplasmic and Nuclear/genetics , Cell Line, Tumor , Cellular Senescence/radiation effects , Centromere/metabolism , Centromere/radiation effects , Centromere/ultrastructure , Gamma Rays , Heterochromatin/radiation effects , Heterochromatin/ultrastructure , Humans , Lamin Type B/metabolism , MCF-7 Cells , Nuclear Envelope/metabolism , Nuclear Envelope/radiation effects , Nuclear Envelope/ultrastructure , Osteoblasts/pathology , Osteoblasts/radiation effects , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Receptors, Cytoplasmic and Nuclear/antagonists & inhibitors , Receptors, Cytoplasmic and Nuclear/metabolism , Signal Transduction , Lamin B Receptor
5.
Crit Rev Eukaryot Gene Expr ; 24(3): 205-23, 2014.
Article in English | MEDLINE | ID: mdl-25072147

ABSTRACT

Recent ground-breaking developments in Omics have generated new hope for overcoming the complexity and variability of biological systems while simultaneously shedding more light on fundamental radiobiological questions that have remained unanswered for decades. In the era of Omics, our knowledge of how genes and proteins interact in the frame of complex networks to preserve genome integrity has been rapidly expanding. Nevertheless, these functional networks must be observed with strong correspondence to the cell nucleus, which is the main target of ionizing radiation. Nuclear architecture and nuclear processes, including DNA damage responses, are precisely organized in space and time. Information regarding these intricate processes cannot be achieved using high-throughput Omics approaches alone, but requires sophisticated structural probing and imaging. Based on the results obtained from studying the relationship between higher-order chromatin structure, DNA double-strand break induction and repair, and the formation of chromosomal translocations, we show the development of Omics solutions especially for radiation research (radiomics) (discussed in this article) and how confocal microscopy as well as novel approaches of molecular localization nanoscopy fill the gaps to successfully place the Omics data in the context of space and time (discussed in our other article in this issue, "Determining Omics Spatiotemporal Dimensions Using Exciting New Nanoscopy Techniques to Assess Complex Cell Responses to DNA Damage: Part B--Structuromics"). Finally, we introduce a novel method of specific chromatin nanotargeting and speculate future perspectives, which may combine nanoprobing and structural nanoscopy to observe structure-function correlations in living cells in real time. Thus, the Omics networks obtained from function analyses may be enriched by real-time visualization of Structuromics.


Subject(s)
DNA Damage/radiation effects , DNA Repair , DNA/radiation effects , Genomic Instability/radiation effects , Radiobiology , Cell Line, Tumor , Cell Nucleus/genetics , Chromatin/radiation effects , DNA Damage/genetics , Genome/genetics , Genome/radiation effects , Humans , Radiation, Ionizing
6.
Crit Rev Eukaryot Gene Expr ; 24(3): 225-47, 2014.
Article in English | MEDLINE | ID: mdl-25072148

ABSTRACT

Recent groundbreaking developments in Omics and bioinformatics have generated new hope for overcoming the complexity and variability of (radio)biological systems while simultaneously shedding more light on fundamental radiobiological questions that have remained unanswered for decades. In the era of Omics, our knowledge of how genes and dozens of proteins interact in the frame of complex signaling and repair pathways (or, rather, networks) to preserve the integrity of the genome has been rapidly expanding. Nevertheless, these functional networks must be observed with strong correspondence to the cell nucleus, which is the main target of ionizing radiation. Information regarding these intricate processes cannot be achieved using high-throughput Omics approaches alone; it requires sophisticated structural probing and imaging. In the first part of this review, the article "Giving Omics Spatiotemporal Dimensions Using Exciting New Nanoscopy Techniques to Assess Complex Cell Responses to DNA Damage: Part A--Radiomics," we showed the development of different Omics solutions and how they are contributing to a better understanding of cellular radiation response. In this Part B we show how high-resolution confocal microscopy as well as novel approaches of molecular localization nanoscopy fill the gaps to successfully place Omics data in the context of space and time. The dynamics of double-strand breaks during repair processes and chromosomal rearrangements at the microscale correlated to aberration induction are explained. For the first time we visualize pan-nuclear nucleosomal rearrangements and clustering at the nanoscale during repair processes. Finally, we introduce a novel method of specific chromatin nanotargeting based on a computer database search of uniquely binding oligonucleotide combinations (COMBO-FISH). With these challenging techniques on hand, we speculate future perspectives that may combine specific COMBO-FISH nanoprobing and structural nanoscopy to observe structure-function correlations in living cells in real-time. Thus, the Omics networks obtained from function analyses may be enriched by real-time visualization of Structuromics.


Subject(s)
Cell Nucleus/radiation effects , DNA Breaks, Double-Stranded/radiation effects , DNA Repair/genetics , Translocation, Genetic/radiation effects , Chromatin/genetics , Chromatin/radiation effects , DNA/radiation effects , Genome/genetics , Genomic Instability , Humans , Microscopy, Confocal , Radiation, Ionizing , Translocation, Genetic/genetics
7.
Appl Radiat Isot ; 83 Pt B: 128-36, 2014 Jan.
Article in English | MEDLINE | ID: mdl-23415104

ABSTRACT

According to their physical characteristics, protons and ion beams promise a revolution in cancer radiotherapy. Curing protocols however reflect rather the empirical knowledge than experimental data on DNA repair. This especially holds for the spatio-temporal organization of repair processes in the context of higher-order chromatin structure-the problematics addressed in this work. The consequences for the mechanism of chromosomal translocations are compared for gamma rays and proton beams.


Subject(s)
Chromatin/chemistry , DNA Damage , DNA Repair , Gamma Rays , Protons , Cell Nucleus/radiation effects , Cells, Cultured , Humans , Microscopy , Translocation, Genetic
8.
Appl Radiat Isot ; 83 Pt B: 177-85, 2014 Jan.
Article in English | MEDLINE | ID: mdl-23454236

ABSTRACT

Cell differentiation is associated with extensive gene silencing, heterochromatinization and potentially decreasing need for repairing DNA double-strand breaks (DSBs). Differentiation stages of blood cells thus represent an excellent model to study DSB induction, repair and misrepair in the context of changing higher-order chromatin structure. We show that immature granulocytes form γH2AX and 53BP1 foci, contrary to the mature cells; however, these foci colocalize only rarely and DSB repair is inefficient. Moreover, specific chromatin structure of granulocytes probably influences DSB induction.


Subject(s)
Cell Differentiation , Chromatin/chemistry , DNA Damage , DNA Repair , Cells, Cultured , Humans , In Situ Hybridization, Fluorescence , Protein Conformation
9.
Radiat Environ Biophys ; 52(4): 471-9, 2013 Nov.
Article in English | MEDLINE | ID: mdl-23934411

ABSTRACT

We compared the effects of inhibitors of kinases ATM (KU55933) and ATR (VE-821) (incubated for 30 min before irradiation) on the radiosensitization of human promyelocyte leukaemia cells (HL-60), lacking functional protein p53. VE-821 reduces phosphorylation of check-point kinase 1 at serine 345, and KU55933 reduces phosphorylation of check-point kinase 2 on threonine 68 as assayed 4 h after irradiation by the dose of 6 Gy. Within 24 h after gamma-irradiation with a dose of 3 Gy, the cells accumulated in the G2 phase (67 %) and the number of cells in S phase decreased. KU55933 (10 µM) did not affect the accumulation of cells in G2 phase and did not affect the decrease in the number of cells in S phase after irradiation. VE-821 (2 and 10 µM) reduced the number of irradiated cells in the G2 phase to the level of non-irradiated cells and increased the number of irradiated cells in S phase, compared to irradiated cells not treated with inhibitors. In the 144 h interval after irradiation with 3 Gy, there was a considerable induction of apoptosis in the VE-821 group (10 µM). The repair of the radiation damage, as observed 72 h after irradiation, was more rapid in the group exposed solely to irradiation and in the group treated with KU55933 (80 and 77 % of cells, respectively, were free of DSBs), whereas in the group incubated with 10 µM VE-821, there were only 61 % of cells free of DSBs. The inhibition of kinase ATR with its specific inhibitor VE-821 resulted in a more pronounced radiosensitizing effect in HL-60 cells as compared to the inhibition of kinase ATM with the inhibitor KU55933. In contrast to KU55933, the VE-821 treatment prevented HL-60 cells from undergoing G2 cell cycle arrest. Taken together, we conclude that the ATR kinase inhibition offers a new possibility of radiosensitization of tumour cells lacking functional protein p53.


Subject(s)
Ataxia Telangiectasia Mutated Proteins/antagonists & inhibitors , Leukemia, Promyelocytic, Acute/pathology , Protein Kinase Inhibitors/pharmacology , Pyrazines/pharmacology , Radiation Tolerance/drug effects , Sulfones/pharmacology , Apoptosis/drug effects , DNA Repair/drug effects , G2 Phase Cell Cycle Checkpoints/drug effects , HL-60 Cells , Humans , Morpholines/pharmacology , Pyrones/pharmacology
10.
Int J Radiat Biol ; 89(6): 416-23, 2013 Jun.
Article in English | MEDLINE | ID: mdl-23362996

ABSTRACT

PURPOSE: Radiotherapy has been used as a treatment of almost 50% of all malignant tumors. The aim of this review is to provide a comprehensive overview of the recent knowledge in the field of molecular mechanisms of radiation-induced double-stranded breaks (DSB) repair. This paper gives particular emphasis to a key DNA repair enzyme, DNA-dependent protein kinase (DNA-PK), which plays a pivotal role in non-homologous end-joining. Furthermore, we discuss possibilities of DNA-PK inhibition and other molecular approaches employed in order to facilitate radiotherapy. CONCLUSIONS: We have reviewed the recent studies using novel potent and selective small-molecular DNA-PK inhibitors and we conclude that targeted inhibition of DNA repair proteins like DNA-PK in cancer cells, in combination with ionizing radiation, improves the efficacy of cancer therapy while minimizing side-effects of ionizing radiation. Moreover, the recent discovery of short interfering RNA (siRNA) and signal interfering DNA (siDNA)-based therapeutics, or small peptides and RNA, shows a new opportunity of selective and safe application of biological treatment. All of these approaches are believed to contribute to more personalized anti-cancer therapy.


Subject(s)
DNA Repair/drug effects , DNA Repair/radiation effects , DNA-Activated Protein Kinase/antagonists & inhibitors , Neoplasms/enzymology , Neoplasms/radiotherapy , Radiation-Sensitizing Agents/administration & dosage , Radiotherapy/methods , Animals , DNA-Activated Protein Kinase/metabolism , Humans
11.
Biochim Biophys Acta ; 1833(3): 767-79, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23269287

ABSTRACT

Terminally-differentiated cells cease to proliferate and acquire specific sets of expressed genes and functions distinguishing them from less differentiated and cancer cells. Mature granulocytes show lobular structure of cell nuclei with highly condensed chromatin in which HP1 proteins are replaced by MNEI. These structural features of chromatin correspond to low level of gene expression and the loss of some important functions as DNA damage repair, shown in this work and, on the other hand, acquisition of a new specific function consisting in the release of chromatin extracellular traps in response to infection by pathogenic microbes. Granulocytic differentiation is incomplete in myeloid leukemia and is manifested by persistence of lower levels of HP1γ and HP1ß isoforms. This immaturity is accompanied by acquisition of DDR capacity allowing to these incompletely differentiated multi-lobed neutrophils of AML patients to respond to induction of DSB by γ-irradiation. Immature granulocytes persist frequently in blood of treated AML patients in remission. These granulocytes contrary to mature ones do not release chromatin for NETs after activation with phorbol myristate-12 acetate-13 and do not exert the neutrophil function in immune defence. We suggest therefore the detection of HP1 expression in granulocytes of AML patients as a very sensitive indicator of their maturation and functionality after the treatment. Our results show that the changes in chromatin structure underlie a major transition in functioning of the genome in immature granulocytes. They show further that leukemia stem cells can differentiate ex vivo to mature granulocytes despite carrying the translocation BCR/ABL.


Subject(s)
Cell Differentiation , Chromatin/genetics , Chromosomal Proteins, Non-Histone/metabolism , DNA Damage , Granulocytes/pathology , Hematopoietic Stem Cells/pathology , Leukemia, Myeloid, Acute/pathology , Neutrophils/pathology , Blotting, Western , Cell Proliferation , Cells, Cultured , Chromobox Protein Homolog 5 , Chromosomal Proteins, Non-Histone/genetics , Fluorescent Antibody Technique , Granulocytes/metabolism , Hematopoietic Stem Cells/metabolism , Humans , Leukemia, Myeloid, Acute/genetics , Leukemia, Myeloid, Acute/metabolism , RNA, Messenger/genetics , Real-Time Polymerase Chain Reaction , Reverse Transcriptase Polymerase Chain Reaction , Tetradecanoylphorbol Acetate
12.
Radiat Environ Biophys ; 51(2): 205-13, 2012 May.
Article in English | MEDLINE | ID: mdl-22278290

ABSTRACT

In the work presented here, changes in haematopoiesis of mice (B6129SF2/J) were studied 1 year after their whole-body exposure to a dose of 7 Gy (72% of mice survived). The irradiated mice were compared with non-irradiated younger (4 months of age) and older (16 months of age) mice. There was a significant increase in the relative abundance of primitive stem cells with long-term capability of the haematopoiesis recovery lin(-)/Sca-1(+)/CD117(+)/CD34(-) in the bone marrow of mice aged 16 months (irradiated and non-irradiated) compared with those aged 4 months. In terms of the ability to respond to further whole-body irradiation at a dose of 1 Gy, the presence of γH2A.X foci was studied in lin(-) bone marrow cells. There was a considerable number of persisting foci in lin(-) stem cells isolated from the bone marrow of the older irradiated mice. In the blood count from the peripheral blood of the older mice (both non-irradiated and irradiated at 7 Gy), there was a significant increase in granulocytes. In the group exposed to 7 Gy, the numbers of thrombocytes significantly increased, and on the contrary, the numbers of erythrocytes, the amount of haemoglobin, and haematocrit significantly decreased.


Subject(s)
Hematopoiesis/radiation effects , Hematopoietic Stem Cells/radiation effects , Age Factors , Animals , Blood Platelets/metabolism , Blood Platelets/radiation effects , Bone Marrow/radiation effects , Cell Line , Erythrocytes/metabolism , Erythrocytes/radiation effects , Female , Granulocytes/metabolism , Granulocytes/radiation effects , Hematopoietic Stem Cells/cytology , Hematopoietic Stem Cells/metabolism , Hemoglobins/metabolism , Hemoglobins/radiation effects , Histones/metabolism , Male , Mice , Whole-Body Irradiation/methods
13.
Cell Signal ; 24(5): 1023-30, 2012 May.
Article in English | MEDLINE | ID: mdl-22245140

ABSTRACT

The BRCA1 gene codes for a protein involved in the DNA double strand break (DDSB) repair. Alongside the dominant full-length splicing form of BRCA1, numerous endogenously expressed alternative splicing variants of unknown significance have been described in various tissues. Some of them retain the original BRCA1 reading frame but lack several critical BRCA1 structural domains, suggesting an altered function of the resulting protein in the BRCA1-regulated processes. To characterize the effect of the BRCA1Δ14-15 splicing variant (with an in-frame deletion affecting the regulatory serine-containing domain) on the DDSB repair, we constructed the MCF-7 clones stably expressing the analyzed variant with/without a shRNA-mediated downregulation of the endogenous full-length wild-type BRCA1 expression. Our results show that the expression of the BRCA1Δ14-15 variant delays the γ-radiation-induced DDSB repair, alters the kinetics of irradiation-induced foci formation/decomposition and reduces the non-homologous end-joining capacity in MCF-7 cells. Therefore, the BRCA1Δ14-15 is not able to functionally replace the full-length wt BRCA1 in the DDSB repair. Our findings indicate that the endogenously expressed BRCA1 alternative splicing variants may negatively influence genome stability and support the growing evidence of the pathological potential of the sequence variants generated by an altered or misregulated alternative splicing in the process of mammary malignant transformation.


Subject(s)
BRCA1 Protein/genetics , DNA End-Joining Repair , Sequence Deletion , Amino Acid Sequence , BRCA1 Protein/metabolism , Base Sequence , Breast Neoplasms , Cell Line, Tumor , Cell Nucleus/metabolism , Cell Nucleus/radiation effects , DNA Breaks, Double-Stranded , Female , Gamma Rays , Gene Expression , Humans , Molecular Sequence Data , Protein Isoforms/genetics , Protein Isoforms/metabolism , Protein Structure, Tertiary , Reading Frames
14.
Radiat Res ; 175(6): 708-18, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21438660

ABSTRACT

The purpose of this work was to determine how fractionated radiation used in the treatment of tumors affects the ability of cancer as well as normal cells to repair induced DNA double-strand breaks (DSBs) and how cells that have lost this ability die. Lymphocytic leukemia cells (MOLT4) were used as an experimental model, and the results were compared to those for normal cell types. The results show that cancer and normal cells were mostly unable to repair all DSBs before the next radiation dose induced new DNA damage. Accumulation of DSBs was observed in normal human fibroblasts and healthy lymphocytes irradiated in vitro after the second radiation dose. The lymphocytic leukemia cells irradiated with 4 × 1 Gy and a single dose of 4 Gy had very similar survival; however, there was a big difference between human fibroblasts irradiated with 4 × 1.5 Gy and a single dose of 6 Gy. These results suggest that exponentially growing lymphocytic leukemia cells, similar to rapidly proliferating tumors, are not very sensitive to fraction size, in contrast to the more slowly growing fibroblasts and most late-responding (radiation therapy dose-limiting) normal tissues, which have a low proliferation index.


Subject(s)
Apoptosis/radiation effects , DNA Breaks, Double-Stranded , Dose Fractionation, Radiation , Cell Proliferation/radiation effects , Cellular Senescence/radiation effects , DNA Repair , Fibroblasts/physiology , Fibroblasts/radiation effects , Humans , Leukemia, Lymphoid/radiotherapy , Lymphocytes/radiation effects , Lymphocytes/ultrastructure , Tumor Cells, Cultured
15.
Mutat Res ; 704(1-3): 88-100, 2010.
Article in English | MEDLINE | ID: mdl-20144732

ABSTRACT

Double-strand breaks (DSBs), continuously introduced into DNA by cell metabolism, ionizing radiation and some chemicals, are the biologically most deleterious type of genome damage, and must be accurately repaired to protect genomic integrity, ensure cell survival, and prevent carcinogenesis. Although a huge amount of information has been published on the molecular basis and biological significance of DSB repair, our understanding of DSB repair and its spatiotemporal arrangement is still incomplete. In particular, the role of higher-order chromatin structure in DSB induction and repair, movement of DSBs and the mechanism giving rise to chromatin exchanges, and many other currently disputed questions are discussed in this review. Finally, a model explaining the formation of chromosome translocations is proposed.


Subject(s)
Chromatin/radiation effects , Chromatin/ultrastructure , DNA Breaks, Double-Stranded , DNA Repair , Radiation, Ionizing , DNA Damage , Humans , Models, Biological , Translocation, Genetic
16.
Biochim Biophys Acta ; 1783(12): 2398-414, 2008 Dec.
Article in English | MEDLINE | ID: mdl-18706456

ABSTRACT

For the first time, DNA double-strand breaks (DSBs) were directly visualized in functionally and structurally different chromatin domains of human cells. The results show that genetically inactive condensed chromatin is much less susceptible to DSB induction by gamma-rays than expressed, decondensed domains. Higher sensitivity of open chromatin for DNA damage was accompanied by more efficient DSB repair. These findings follow from comparing DSB induction and repair in two 11 Mbp-long chromatin regions, one with clusters of highly expressed genes and the other, gene-poor, containing mainly genes having only low transcriptional activity. The same conclusions result from experiments with whole chromosome territories, differing in gene density and consequently in chromatin condensation. It follows from our further results that this lower sensitivity of DNA to the damage by ionizing radiation in heterochromatin is not caused by the simple chromatin condensation but very probably by the presence of a higher amount of proteins compared to genetically active and decondensed chromatin. In addition, our results show that some agents potentially used for cell killing in cancer therapy (TSA, hypotonic and hypertonic) influence cell survival of irradiated cells via changes in chromatin structure and efficiency of DSB repair in different ways.


Subject(s)
Chromatin/radiation effects , DNA Damage/radiation effects , DNA/radiation effects , Gamma Rays , Apoptosis/radiation effects , Cell Nucleus/metabolism , Chromatin Immunoprecipitation , Cobalt Radioisotopes , DNA Repair/radiation effects , Enzyme Inhibitors/pharmacology , Fibroblasts/cytology , Fibroblasts/metabolism , Fibroblasts/radiation effects , Fluorescent Antibody Technique , G1 Phase/physiology , G1 Phase/radiation effects , Gene Expression Regulation/radiation effects , Histone Deacetylase Inhibitors , Histone Deacetylases/metabolism , Humans , Hydroxamic Acids/pharmacology , In Situ Hybridization, Fluorescence , S Phase/physiology , S Phase/radiation effects , Skin/cytology , Skin/metabolism , Skin/radiation effects
17.
Acta Biochim Pol ; 55(2): 381-90, 2008.
Article in English | MEDLINE | ID: mdl-18596987

ABSTRACT

The main aim of this study was to compare the reaction of quiescent and proliferating, i.e. phytohemagglutinin (PHA)-stimulated, human peripheral blood mononuclear cells (PBMCs) to gamma-radiation, and analyse changes of proteins related to repair of DNA damage and apoptosis, such as gammaH2A.X, p53, p53 phosphorylation at serines-15 and -392, and p21 and their dose dependence. Freshly isolated PBMCs in peripheral blood are predominantly quiescent, in G(0) phase, and with very low amounts of proteins p53 and p21. Using confocal microscopy we detected dose dependent (0.5-5 Gy) induction of foci containing gammaH2A.X (1 h after gamma-ray exposure), which are formed around radiation-induced double strand breaks of DNA. Apoptosis was detected from 24 h after irradiation by the dose of 4 Gy onwards by Annexin V binding and lamin B cleavage. Seventy two hours after irradiation 70% of CD3(+) lymphocytes were A(+). Neither increase in p53 nor its phosphorylation on serine-392 after irradiation was detected in these cells. However, massive increase in p21 (cyclin-dependent kinase inhibitor 1A) was detected after irradiation, which can be responsible for late occurrence of apoptosis in these quiescent cells. PHA-stimulation itself (72 h) caused an increase in early apoptosis (A(+)PI(-)) in comparison to non-stimulated PBMCs (38% A(+) resp. 13.4%). After PHA-stimulation also the amount of gammaH2A.X, p53, and p21 increased, but no phosphorylation of p53 on serine-392 or -15 was detected. Reaction to gamma-radiation was different in PHA-stimulated lymphocytes: the p53 pathway was activated and p53 was phosphorylated on serines-15 and -392 4 h after irradiation by the dose of 4 Gy. Phosphorylation of p53 at serine-15 increased in a dose-dependent manner in the studied dose range 0.2-7.5 Gy. Also the amount of p21 increased after irradiation. Seventy two hours after irradiation of PHA-stimulated CD3(+) T lymphocytes by the dose of 4 Gy 65% of cells were A(+).


Subject(s)
Histones/metabolism , Lymphocytes/metabolism , Lymphocytes/radiation effects , Tumor Suppressor Protein p53/metabolism , Apoptosis/radiation effects , DNA Damage , Dose-Response Relationship, Radiation , Gamma Rays , Histones/chemistry , Humans , In Vitro Techniques , Lymphocytes/cytology , Lymphocytes/drug effects , Phosphorylation , Phytohemagglutinins/pharmacology , Tumor Suppressor Protein p53/chemistry
18.
Mol Cells ; 26(4): 356-61, 2008 Oct 31.
Article in English | MEDLINE | ID: mdl-18612243

ABSTRACT

In this work, we have studied the structural and functional linkage between lamin A/C, nuclear actin, and organization of chromosome territories (CTs) in mammary carcinoma MCF-7 cells. Selective down-regulation of lamin A/C expression led to disruption of the lamin A/C perinuclear layer and disorganization of lamin-bound emerin complexes at the inner nuclear membrane. The silencing of lamin A/C expression resulted in a decrease in the volume and surface area of chromosome territories, especially in chromosomes with high heterochromatin content. Inhibition of actin polymerization led to relaxation of the structure of chromosome territories, and an increase in the volumes and surface areas of the chromosome territories of human chromosomes 1, 2 and 13. The results show an important role of polymeric actin in the organization of the nuclei and the chromosome territories.


Subject(s)
Actins/metabolism , Genome, Human/genetics , Lamin Type A/metabolism , Cell Line, Tumor , Cell Nucleus/metabolism , Cell Shape , Chromosomes, Human/metabolism , Down-Regulation , Humans , Microscopy, Confocal
19.
Acta Biochim Pol ; 55(2): 307-15, 2008.
Article in English | MEDLINE | ID: mdl-18560607

ABSTRACT

Functions of nuclear polymeric proteins such as lamin A/C and actin in transport of plasmid DNA were studied. The results show that the lamina plays an important role in plasmid DNA's entry into the cell nucleus from the cytoplasm. Selective disruption of lamin A/C led to a halt in plasmid DNA transport through the nuclear envelope. Inside the nucleus, plasmid DNA was frequently localized at sites with impaired genome integrity, such as DNA double-strand breaks (DSBs), occurring spontaneously or induced by ionizing radiation. Polymeric actin obviously participates in nuclear transport of plasmid DNA, since inhibition of actin polymerization by latrunculin B disturbed plasmid transport inside the cell nucleus. In addition, precluding of actin polymerization inhibited plasmid co-localization with newly induced DSBs. These findings indicate the crucial role of polymeric actin in intranuclear plasmid transport.


Subject(s)
Actins/metabolism , Lamins/metabolism , Plasmids/genetics , Plasmids/metabolism , Actins/chemistry , Actins/genetics , Active Transport, Cell Nucleus , Cell Line , Cell Nucleus/metabolism , DNA Breaks, Double-Stranded , DNA, Recombinant/genetics , DNA, Recombinant/metabolism , Gamma Rays , Gene Silencing , Humans , Lamins/antagonists & inhibitors , Lamins/chemistry , Lamins/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Transfection
20.
Leuk Res ; 32(8): 1259-67, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18262646

ABSTRACT

Mutations in NBS1 gene are related to higher occurrence of malignancies. In this work we studied response of T-lymphocyte leukemia cells MOLT-4 to ionizing radiation. We detected IRIF (ionizing radiation forming foci) containing histone gammaH2A.X, protein 53BP1, and Nbs1, which were formed around double-strand breaks of DNA. We found dose-dependent increase in foci number (colocalization of gammaH2A.X and 53BP1) and gammaH2A.X amount (integral optical density) 1h after irradiation. After the dose of 1.5 Gy the number of foci decreases with time, but 72 h after irradiation 9% of live cells still contained big foci around unrepaired DNA damage. Western blot method revealed massive phosphorylation of H2A.X during apoptosis induction, 6-24 h after irradiation by the doses 1.5 and 3 Gy. Cells with apoptotic morphology showed strong phosphorylation of H2A.X, but it was not accompanied by 53BP1. 1h after irradiation by the lethal doses 5 and 10 Gy we detected by Western blot a decrease in repair proteins Mre11, Rad50, and Nbs1. While phosphorylation of H2A.X 1h after irradiation was detected by both confocal microscopy and Western blot, phosphorylation of Nbs1 on serine 343 was not detectable in MOLT-4 cells. Despite functional ATM and p53 the phosphorylation of Nbs1 on serine 343 was impaired in these cells, and might be responsible for high radiosensitivity of MOLT-4 cells.


Subject(s)
Cell Cycle Proteins/metabolism , Leukemia, T-Cell/metabolism , Leukemia, T-Cell/radiotherapy , Nuclear Proteins/metabolism , Cell Line, Tumor , DNA Damage , DNA Repair , Dose-Response Relationship, Radiation , Humans , Phosphorylation , Radiation Tolerance
SELECTION OF CITATIONS
SEARCH DETAIL
...