Nile Blue: A Red-Emissive Fluorescent Dye That Displays Differential Self-Assembly and Binding to G-Quadruplexes.

Nile Blue (NB) is a red-emissive dye that is well-known for imaging and staining applications. In this work, we describe the interaction of NB with various types of G-quadruplexes belonging to different topologies, molecularities, and conformations. Using spectroscopic techniques, we have determined the preferential binding of NB to c-Myc G-quadruplex and the other aspects of its binding. Concentration- and temperature-dependent studies showed that NB exists in a dynamic equilibrium between monomeric and H-aggregated states, which could be modulated by the addition of external agents such as anionic surfactants. NB displayed differential self-assembly with different types of G-quadruplex and duplex DNAs modulating its dynamic equilibrium between the monomeric and H-aggregated states. Fluorescence-based displacement studies revealed a 1:1 binding stoichiometry upon interaction with c-Myc G-quadruplex and an association constant of Kapp = 6.7 × 106 M-1. Circular dichroism studies indicated that NB does not cause changes in the overall conformation of either G-quadruplexes or duplexes; however, it does indicate nucleic acid-dependent self-assembly at higher concentrations. Heat capacity measurement showed a more negative change when compared to that in DNA duplex, indicating more burial of the polar surface area by NB to the G-quadruplex host.

Characterization data of palladium-alumina on activated biochar catalyst for hydrogenolysis reactions.

This article presents experimental data on the techniques used for the characterization of Pd-Al2O3 supported on activated biochar (2Pd-5Al/ABC) catalyst. The reported data is collected as a part of the research on the 2Pd-5Al/ABC catalyst used for lignin hydrogenolysis [1]. The data on X-ray powder diffraction, ammonia-temperature programmed desorption, pyridine diffuse reflectance infrared Fourier transform spectroscopy, and high-resolution scanning electron microscopy of various catalysts are valuable to study the changes in surface morphology and acidity upon metal loading. The data from thermogravimetric analysis, X-ray photoelectron spectroscopy, and scanning electron microscopy-energy dispersive X-ray spectroscopy are also provided to understand the thermal stability, ionic state of various metals and elemental composition of the catalyst, respectively. The data provided can be used for developing novel catalysts from renewable biochar, and the characterization of noble metal-metal oxide loaded catalysts can aid researchers to design composite catalytic materials for various applications.