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1.
J Comput Biol ; 29(3): 276-291, 2022 03.
Article in English | MEDLINE | ID: mdl-35230161

ABSTRACT

This article presents a fractional mathematical model of the human immunodeficiency virus (HIV)/AIDS spread with a fractional derivative of the Caputo type. The model includes five compartments corresponding to the variables describing the susceptible patients, HIV-infected patients, people with AIDS but not receiving antiretroviral treatment, patients being treated, and individuals who are immune to HIV infection by sexual contact. Moreover, it is assumed that the total population is constant. We construct an optimization technique supported by a class of basis functions, consisting of the generalized shifted Jacobi polynomials (GSJPs). The solution of the fractional HIV/AIDS epidemic model is approximated by means of GSJPs with coefficients and parameters in the matrix form. After calculating and combining the operational matrices with the Lagrange multipliers, we obtain the optimization method. The theorems on the existence, unique, and convergence results of the method are proved. Several illustrative examples show the performance of the proposed method. Mathematics Subject Classification: 97M60; 41A58; 92C42.


Subject(s)
Acquired Immunodeficiency Syndrome , HIV Infections , Acquired Immunodeficiency Syndrome/drug therapy , Acquired Immunodeficiency Syndrome/epidemiology , Algorithms , HIV Infections/drug therapy , HIV Infections/epidemiology , Humans , Mathematics , Models, Theoretical
2.
J Adv Res ; 32: 45-60, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34484825

ABSTRACT

INTRODUCTION: During the last years the modeling of dynamical phenomena has been advanced by including concepts borrowed from fractional order differential equations. The diffusion process plays an important role not only in heat transfer and fluid flow problems, but also in the modelling of pattern formation that arises in porous media. The modified time-fractional diffusion equation provides a deeper understanding of several dynamic phenomena. OBJECTIVES: The purpose of the paper is to develop an efficient meshless technique for approximating the modified time-fractional diffusion problem formulated in the Riemann-Liouville sense. METHODS: The temporal discretization is performed by integrating both sides of the modified time-fractional diffusion model. The unconditional stability of the time discretization scheme and the optimal convergence rate are obtained. Then, the spatial derivatives are discretized through a local hybridization of the cubic and Gaussian radial basis function. This hybrid kernel improves the condition of the system matrix. Therefore, the solution of the linear system can be obtained using direct solvers that reduce significantly computational cost. The main idea of the method is to consider the distribution of data points over the local support domain where the number of points is almost constant. RESULTS: Three examples show that the numerical procedure has good accuracy and applicable over complex domains with various node distributions. Numerical results on regular and irregular domains illustrate the accuracy, efficiency and validity of the technique. CONCLUSION: This paper adopts a local hybrid kernel meshless approach to solve the modified time-fractional diffusion problem. The main results of the research is the numerical technique with non-uniform distribution in irregular grids.

3.
Nonlinear Dyn ; 106(2): 1525-1555, 2021.
Article in English | MEDLINE | ID: mdl-34465942

ABSTRACT

Given a data-set of Ribonucleic acid (RNA) sequences we can infer the phylogenetics of the samples and tackle the information for scientific purposes. Based on current data and knowledge, the SARS-CoV-2 seemingly mutates much more slowly than the influenza virus that causes seasonal flu. However, very recent evolution poses some doubts about such conjecture and shadows the out-coming light of people vaccination. This paper adopts mathematical and computational tools for handling the challenge of analyzing the data-set of different clades of the severe acute respiratory syndrome virus-2 (SARS-CoV-2). On one hand, based on the mathematical paraphernalia of tools, the concept of distance associated with the Kolmogorov complexity and Shannon information theories, as well as with the Hamming scheme, are considered. On the other, advanced data processing computational techniques, such as, data compression, clustering and visualization, are borrowed for tackling the problem. The results of the synergistic approach reveal the complex time dynamics of the evolutionary process and may help to clarify future directions of the SARS-CoV-2 evolution.

4.
Sci Rep ; 11(1): 15622, 2021 08 02.
Article in English | MEDLINE | ID: mdl-34341390

ABSTRACT

In this article, a fractional order breast cancer competition model (F-BCCM) under the Caputo fractional derivative is analyzed. A new set of basis functions, namely the generalized shifted Legendre polynomials, is proposed to deal with the solutions of F-BCCM. The F-BCCM describes the dynamics involving a variety of cancer factors, such as the stem, tumor and healthy cells, as well as the effects of excess estrogen and the body's natural immune response on the cell populations. After combining the operational matrices with the Lagrange multipliers technique we obtain an optimization method for solving the F-BCCM whose convergence is investigated. Several examples show that a few number of basis functions lead to the satisfactory results. In fact, numerical experiments not only confirm the accuracy but also the practicability and computational efficiency of the devised technique.


Subject(s)
Breast Neoplasms , Algorithms , Female , Humans
5.
Sci Rep ; 11(1): 593, 2021 Jan 12.
Article in English | MEDLINE | ID: mdl-33436809

ABSTRACT

Reactive power dispatch is a vital problem in the operation, planning and control of power system for obtaining a fixed economic load expedition. An optimal dispatch reduces the grid congestion through the minimization of the active power loss. This strategy involves adjusting the transformer tap settings, generator voltages and reactive power sources, such as flexible alternating current transmission systems (FACTS). The optimal dispatch improves the system security, voltage profile, power transfer capability and overall network efficiency. In the present work, a fractional evolutionary approach achieves the desired objectives of reactive power planning by incorporating FACTS devices. Two compensation arrangements are possible: the shunt type compensation, through Static Var compensator (SVC) and the series compensation through the Thyristor controlled series compensator (TCSC). The fractional order Darwinian Particle Swarm Optimization (FO-DPSO) is implemented on the standard IEEE 30, IEEE 57 and IEEE 118 bus test systems. The power flow analysis is used for determining the location of TCSC, while the voltage collapse proximity indication (VCPI) method identifies the location of the SVC. The superiority of the FO-DPSO is demonstrated by comparing the results with those obtained by other techniques in terms of measure of central tendency, variation indices and time complexity.

6.
ISA Trans ; 111: 144-155, 2021 May.
Article in English | MEDLINE | ID: mdl-33220943

ABSTRACT

Time delay occurs naturally due to the limited bandwidth of any real-world system. However, this problem can deteriorate the system performance and can even result in system instability. Input saturation is also an essential issue due to the energy constraint in real actuators that makes the control design procedure more difficult. This article concerns with the stability of uncertain fractional order (FO) delay systems of neutral type including structured uncertainties, distributed delays and actuator saturation. A Lyapunov-Krasovskii functional allows the formulation of the conditions to insure the asymptotic robust stability of such systems via the linear matrix inequalities (LMI) and to compute the gain of a state feedback controller. In addition, by using the cone complementarity linearization method, we obtain the controller gains that extend the domain of attraction. Several simulations validate the theoretical analysis.

7.
J Adv Res ; 25: 97-109, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32922978

ABSTRACT

This paper is devoted to the problem of uncertainty in fractional-order Chaotic systems implemented by means of standard electronic components. The fractional order element (FOE) is typically substituted by one complex impedance network containing a huge number of discrete resistors and capacitors. In order to balance the complexity and accuracy of the circuit, a sparse optimization based parameter selection method is proposed. The random error and the uncertainty of system implementation are analyzed through numerical simulations. The effectiveness of the method is verified by numerical and circuit simulations, tested experimentally with electronic circuit implementations. The simulations and experiments show that the proposed method reduces the order of circuit systems and finds a minimum number for the combination of commercially available standard components.

8.
J Adv Res ; 25: 205-216, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32922987

ABSTRACT

This paper deals with approximating the time fractional Tricomi-type model in the sense of the Caputo derivative. The model is often adopted for describing the anomalous process of nearly sonic speed gas dynamics. The temporal semi-discretization is computed via a finite difference algorithm, while the spatial discretization is obtained using the local radial basis function in a finite difference mode. The local collocation method approximates the differential operators using a weighted sum of the function values over a local collection of nodes (named stencil) through a radial basis function expansion. This technique considers merely the discretization nodes of each subdomain around the collocation node. This leads to sparse systems and tackles the ill-conditioning produced of global collocation. The theoretical convergence and stability analyses of the proposed time semi-discrete scheme are proved by means of the discrete energy method. Numerical results confirm the accuracy and efficiency of the new approach.

9.
Nonlinear Dyn ; 101(3): 1731-1750, 2020.
Article in English | MEDLINE | ID: mdl-32836811

ABSTRACT

This paper tackles the information of 133 RNA viruses available in public databases under the light of several mathematical and computational tools. First, the formal concepts of distance metrics, Kolmogorov complexity and Shannon information are recalled. Second, the computational tools available presently for tackling and visualizing patterns embedded in datasets, such as the hierarchical clustering and the multidimensional scaling, are discussed. The synergies of the common application of the mathematical and computational resources are then used for exploring the RNA data, cross-evaluating the normalized compression distance, entropy and Jensen-Shannon divergence, versus representations in two and three dimensions. The results of these different perspectives give extra light in what concerns the relations between the distinct RNA viruses.

10.
Nonlinear Dyn ; 100(3): 2953-2972, 2020.
Article in English | MEDLINE | ID: mdl-32427206

ABSTRACT

Complex systems have characteristics that give rise to the emergence of rare and extreme events. This paper addresses an example of such type of crisis, namely the spread of the new Coronavirus disease 2019 (COVID-19). The study deals with the statistical comparison and visualization of country-based real-data for the period December 31, 2019, up to April 12, 2020, and does not intend to address the medical treatment of the disease. Two distinct approaches are considered, the description of the number of infected people across time by means of heuristic models fitting the real-world data, and the comparison of countries based on hierarchical clustering and multidimensional scaling. The computational and mathematical modeling lead to the emergence of patterns, highlighting similarities and differences between the countries, pointing toward the main characteristics of the complex dynamics.

11.
Neural Netw ; 117: 307-327, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31220727

ABSTRACT

This paper studies the robust stability analysis for a class of memristive-based neural networks (NN). The NN consists of a fractional order neutral type quaternion-valued leaky integrator echo state with parameter uncertainties and time-varying delays. First, the quaternion-valued leaky integrator echo state NN with QUAD vector field activation function is transformed into a real-valued system using a linear mapping function. Then, the Lyapunov-Krasovskii functional is adopted to derive the sufficient conditions on the existence and uniqueness of Filippov solution of the NN equilibrium point. The delay-dependent robust stability analysis of such NN is provided with the help of linear matrix inequality technique. Finally, the theoretical results are validated by means of a numerical example.


Subject(s)
Neural Networks, Computer , Uncertainty
12.
Interdiscip Sci ; 11(1): 86-94, 2019 Mar.
Article in English | MEDLINE | ID: mdl-28391493

ABSTRACT

This paper addresses the visualization of complex information using multidimensional scaling (MDS). MDS is a technique adopted for processing data with multiple features scattered in high-dimensional spaces. For illustrating the proposed techniques, the case of viral diseases is considered. The study evaluates the characteristics of 21 viruses in the perspective of clinical information. Several new schemes are proposed for improving the visualization of the MDS charts. The results follow standard clinical practice, proving that the method represents a valuable tool to study a large number of viruses.


Subject(s)
Data Visualization , Viruses , Algorithms , Humans
13.
Front Physiol ; 9: 975, 2018.
Article in English | MEDLINE | ID: mdl-30087620

ABSTRACT

The mechanisms of atrial fibrillation (AF) are a challenging research topic. The rotor hypothesis states that the AF is sustained by a reentrant wave that propagates around an unexcited core. Cardiac tissue heterogeneities, both structural and cellular, play an important role during fibrillatory dynamics, so that the ionic characteristics of the currents, their spatial distribution and their structural heterogeneity determine the meandering of the rotor. Several studies about rotor dynamics implement the standard diffusion equation. However, this mathematical scheme carries some limitations. It assumes the myocardium as a continuous medium, ignoring, therefore, its discrete and heterogeneous aspects. A computational model integrating both, electrical and structural properties could complement experimental and clinical results. A new mathematical model of the action potential propagation, based on complex fractional order derivatives is presented. The complex derivative order appears of considering the myocardium as discrete-scale invariant fractal. The main aim is to study the role of a myocardial, with fractal characteristics, on atrial fibrillatory dynamics. For this purpose, the degree of structural heterogeneity is described through derivatives of complex order γ = α + jß. A set of variations for γ is tested. The real part α takes values ranging from 1.1 to 2 and the imaginary part ß from 0 to 0.28. Under this scheme, the standard diffusion is recovered when α = 2 and ß = 0. The effect of γ on the action potential propagation over an atrial strand is investigated. Rotors are generated in a 2D model of atrial tissue under electrical remodeling due to chronic AF. The results show that the degree of structural heterogeneity, given by γ, modulates the electrophysiological properties and the dynamics of rotor-type reentrant mechanisms. The spatial stability of the rotor and the area of its unexcited core are modulated. As the real part decreases and the imaginary part increases, simulating a higher structural heterogeneity, the vulnerable window to reentrant is increased, as the total meandering of the rotor tip. This in silico study suggests that structural heterogeneity, described by means of complex order derivatives, modulates the stability of rotors and that a wide range of rotor dynamics can be generated.

14.
Entropy (Basel) ; 20(9)2018 Sep 05.
Article in English | MEDLINE | ID: mdl-33265760
15.
PLoS One ; 10(3): e0121277, 2015.
Article in English | MEDLINE | ID: mdl-25811177

ABSTRACT

Waves of globalization reflect the historical technical progress and modern economic growth. The dynamics of this process are here approached using the multidimensional scaling (MDS) methodology to analyze the evolution of GDP per capita, international trade openness, life expectancy, and education tertiary enrollment in 14 countries. MDS provides the appropriate theoretical concepts and the exact mathematical tools to describe the joint evolution of these indicators of economic growth, globalization, welfare and human development of the world economy from 1977 up to 2012. The polarization dance of countries enlightens the convergence paths, potential warfare and present-day rivalries in the global geopolitical scene.


Subject(s)
Economics , Internationality , Models, Theoretical , Humans
16.
Gene ; 491(1): 81-7, 2012 Jan 01.
Article in English | MEDLINE | ID: mdl-22001546

ABSTRACT

This paper analyzes the DNA code of several species in the perspective of information content. For that purpose several concepts and mathematical tools are selected towards establishing a quantitative method without a priori distorting the alphabet represented by the sequence of DNA bases. The synergies of associating Gray code, histogram characterization and multidimensional scaling visualization lead to a collection of plots with a categorical representation of species and chromosomes.


Subject(s)
Chromosomes , Phylogeny , Sequence Analysis, DNA , Animals , Computational Biology , Genetic Code , Mathematics
17.
Genomics ; 98(3): 155-63, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21672622

ABSTRACT

This paper studies the human DNA in the perspective of signal processing. Six wavelets are tested for analyzing the information content of the human DNA. By adopting real Shannon wavelet several fundamental properties of the code are revealed. A quantitative comparison of the chromosomes and visualization through multidimensional and dendograms is developed.


Subject(s)
Chromosomes, Human/genetics , DNA , Wavelet Analysis , Algorithms , Humans , Sequence Analysis, DNA
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