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1.
Environ Sci Pollut Res Int ; 27(21): 26982-26997, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32385819

ABSTRACT

Three smart novel polystyrene-based hydrogel nanocomposites were introduced for recovery of some divalent heavy metals (Cu2+ ad Pb2+) from simulated solutions for industrial wastewater remediation. In this regard, magnetic nanoparticles were prepared then fabricated with polystyrene waste and a copolymer of acrylic acid and acrylamide in presence of an initiator/crosslinking system. The chemical amendment process was established by the IR spectroscopy and the prepared hydrogels were characterized by the AFM microscopy and XRD analysis. Moreover, the elimination efficacy of the prepared hydrogels was monitored for Cu2+ and Pb2+versus different temperatures and pH values in simulated solution. The data showed a direct relation between the contact time and the amount of the metal removed. Moreover, it was found that the removal efficiency decreases within the region between LCST of polyacrylamide and HCST of polystyrene. It was also proved that maximum metal removal was attained at neutral pH. The maximum removal was achieved by the hydrogel with minimum magnetite content with removal capacity of 128 mg/g of Cu2+ and 122 mg/g of Pb2+ in single removal experiments at optimum test conditions. In double removal experiments, the prepared hydrogels showed obvious selectivity towards Cu2+ ions. The reusability of the investigated hydrogels was examined at three swelling-deswelling cycles.


Subject(s)
Metals, Heavy , Water Pollutants, Chemical/analysis , Adsorption , Cations , Hydrogels , Hydrogen-Ion Concentration , Magnetic Phenomena , Polystyrenes , Solutions
2.
Methods Mol Biol ; 1860: 289-301, 2019.
Article in English | MEDLINE | ID: mdl-30317513

ABSTRACT

Endocytosis is a fundamental process underlying diverse eukaryotic physiology. The terminal stage of this process is membrane fusion between the perimeter membrane of a late endosome filled with intraluminal vesicles, or multivesicular body (MVB), and the lysosome membrane to facilitate catabolism of internalized biomaterials or surface polytopic proteins. To comprehensively understand the mechanisms underlying MVB-lysosome membrane fusion, we developed a quantitative, cell-free assay to study this SNARE-mediated event in molecular detail using Saccharomyces cerevisiae and its vacuolar lysosome, or vacuole, as models. This involves separately isolating organelles from two yeast strains each expressing a different complementary fusion probe targeted to the lumen of either MVBs or vacuoles. Isolated organelles are mixed in vitro under fusogenic conditions. Upon MVB-vacuole membrane fusion, luminal contents mix to facilitate probe interaction, reconstituting ß-lactamase activity recorded by a colorimetric enzyme activity assay. This method accommodates a multitude of approaches (e.g., genetics, addition of purified protein reagents) to study this process in isolation, and in theory could be repurposed to study other SNARE-mediated fusion events within cells.


Subject(s)
SNARE Proteins/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Lysosomes/metabolism , Membrane Fusion , Multivesicular Bodies/metabolism , Vacuoles/metabolism
3.
Dev Cell ; 47(1): 80-97.e6, 2018 10 08.
Article in English | MEDLINE | ID: mdl-30269949

ABSTRACT

Upon vacuolar lysosome (or vacuole) fusion in S. cerevisiae, a portion of membrane is internalized and catabolized. Formation of this intralumenal fragment (ILF) is important for organelle protein and lipid homeostasis and remodeling. But how ILF formation is optimized for membrane turnover is not understood. Here, we show that fewer ILFs form when the interaction between the Rab-GTPase Ypt7 and its effector Vps41 (a subunit of the tethering complex HOPS) is interrupted by a point mutation (Ypt7-D44N). Subsequent phosphorylation of Vps41 by the casein kinase Yck3 prevents stabilization of trans-SNARE complexes needed for lipid bilayer pore formation. Impairing ILF formation prevents clearance of misfolded proteins from vacuole membranes and promotes organelle permeability and cell death. We propose that HOPS coordinates Rab, kinase, and SNARE cycles to modulate ILF size during vacuole fusion, regulating lipid and protein turnover important for quality control and membrane integrity.


Subject(s)
Membrane Fusion/physiology , Saccharomyces cerevisiae Proteins/physiology , Vacuoles/physiology , rab GTP-Binding Proteins/physiology , Casein Kinase I/metabolism , Homeostasis , Lipid Bilayers , Lipid Metabolism , Lipids/physiology , Lysosomes , Permeability , Phosphorylation , Phosphotransferases , Proteolysis , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism , Vacuoles/metabolism , Vesicular Transport Proteins/genetics , Vesicular Transport Proteins/metabolism , Vesicular Transport Proteins/physiology , rab GTP-Binding Proteins/genetics , rab GTP-Binding Proteins/metabolism
4.
Mol Biol Cell ; 29(3): 317-325, 2018 02 01.
Article in English | MEDLINE | ID: mdl-29212874

ABSTRACT

Loss-of-function mutations in human endosomal Na+(K+)/H+ exchangers (NHEs) NHE6 and NHE9 are implicated in neurological disorders including Christianson syndrome, autism, and attention deficit and hyperactivity disorder. These mutations disrupt retention of surface receptors within neurons and glial cells by affecting their delivery to lysosomes for degradation. However, the molecular basis of how these endosomal NHEs control endocytic trafficking is unclear. Using Saccharomyces cerevisiae as a model, we conducted cell-free organelle fusion assays to show that transport activity of the orthologous endosomal NHE Nhx1 is important for multivesicular body (MVB)-vacuolar lysosome fusion, the last step of endocytosis required for surface protein degradation. We find that deleting Nhx1 disrupts the fusogenicity of the MVB, not the vacuole, by targeting pH-sensitive machinery downstream of the Rab-GTPase Ypt7 needed for SNARE-mediated lipid bilayer merger. All contributing mechanisms are evolutionarily conserved offering new insight into the etiology of human disorders linked to loss of endosomal NHE function.


Subject(s)
Multivesicular Bodies/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae Proteins/physiology , Sodium-Hydrogen Exchangers/metabolism , Sodium-Hydrogen Exchangers/physiology , Biological Transport , Endocytosis/physiology , Endosomes/metabolism , Humans , Lysosomes/metabolism , Membrane Fusion/physiology , Multivesicular Bodies/physiology , Potassium-Hydrogen Antiporters/metabolism , Protein Transport , Proteolysis , SNARE Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Vacuoles/metabolism , rab GTP-Binding Proteins/metabolism
5.
Traffic ; 19(2): 138-149, 2018 02.
Article in English | MEDLINE | ID: mdl-29135058

ABSTRACT

When marked for degradation, surface receptor and transporter proteins are internalized and delivered to endosomes where they are packaged into intralumenal vesicles (ILVs). Many rounds of ILV formation create multivesicular bodies (MVBs) that fuse with lysosomes exposing ILVs to hydrolases for catabolism. Despite being critical for protein degradation, the molecular underpinnings of MVB-lysosome fusion remain unclear, although machinery underlying other lysosome fusion events is implicated. But how then is specificity conferred? And how is MVB maturation and fusion coordinated for efficient protein degradation? To address these questions, we developed a cell-free MVB-lysosome fusion assay using Saccharomyces cerevisiae as a model. After confirming that the Rab7 ortholog Ypt7 and the multisubunit tethering complex HOPS (homotypic fusion and vacuole protein sorting complex) are required, we found that the Qa-SNARE Pep12 distinguishes this event from homotypic lysosome fusion. Mutations that impair MVB maturation block fusion by preventing Ypt7 activation, confirming that a Rab-cascade mechanism harmonizes MVB maturation with lysosome fusion.


Subject(s)
Endosomes/metabolism , Lysosomes/metabolism , Multivesicular Bodies/metabolism , Saccharomyces cerevisiae/metabolism , Biological Transport/physiology , Cell-Free System , Endocytosis/physiology , Membrane Fusion/physiology , Protein Transport , Saccharomyces cerevisiae Proteins/metabolism , Vesicular Transport Proteins/metabolism , rab GTP-Binding Proteins/metabolism
6.
Dev Cell ; 40(2): 151-167, 2017 01 23.
Article in English | MEDLINE | ID: mdl-28017618

ABSTRACT

Lysosomes rely on their resident transporter proteins to return products of catabolism to the cell for reuse and for cellular signaling, metal storage, and maintaining the lumenal environment. Despite their importance, little is known about the lifetime of these transporters or how they are regulated. Using Saccharomyces cerevisiae as a model, we discovered a new pathway intrinsic to homotypic lysosome membrane fusion that is responsible for their degradation. Transporter proteins are selectively sorted by the docking machinery into an area between apposing lysosome membranes, which is internalized and degraded by lumenal hydrolases upon organelle fusion. These proteins have diverse lifetimes that are regulated in response to protein misfolding, changing substrate levels, or TOR activation. Analogous to endocytosis for controlling surface protein levels, the "intralumenal fragment pathway" is critical for lysosome membrane remodeling required for organelle function in the context of cellular protein quality control, ion homeostasis, and metabolism.


Subject(s)
Lysosomes/metabolism , Membrane Fusion , Membrane Transport Proteins/metabolism , Proteolysis , Saccharomyces cerevisiae Proteins/metabolism , Saccharomyces cerevisiae/metabolism , Autophagy/drug effects , Cycloheximide/pharmacology , Endosomal Sorting Complexes Required for Transport/metabolism , Green Fluorescent Proteins/metabolism , Hydrogen-Ion Concentration , Lysosomes/drug effects , Membrane Fusion/drug effects , Protein Transport/drug effects , Proteolysis/drug effects , Saccharomyces cerevisiae/drug effects , Signal Transduction/drug effects , Vacuolar Proton-Translocating ATPases/metabolism
7.
Adv Mater ; 28(17): 3366-73, 2016 05.
Article in English | MEDLINE | ID: mdl-26946165

ABSTRACT

Efficient homo-tandem and triple-junction polymer solar cells are constructed by stacking identical subcells composed of the wide-bandgap polymer PBDTTPD, achieving power conversion efficiencies >8% paralleled by open-circuit voltages >1.8 V. The high-voltage homo-tandem is used to demonstrate PV-driven electrochemical water splitting with an estimated solar-to-hydrogen conversion efficiency of ≈6%.

8.
Pak J Pharm Sci ; 28(4): 1301-6, 2015 Jul.
Article in English | MEDLINE | ID: mdl-26142520

ABSTRACT

Bacterial adhesion to urinary catheter was evaluated by measuring the light emitted from a recombinant bioluminescent glycocalyx producer Escherichia coli strain. Generation of the bioluminescent strain was carried out by transforming the bacterial cells with pUCP18-GFP plasmid that contains a green fluorescence gene. Light emission measurement was closely correlated with the number of the adherent cells, giving a detectable signal from 1.2 X 10² cells. The efficiency of this assay was confirmed by testing the antiadherent effect of subinhibitory concentrations of ciprofloxacin with the aid of a model for in-vitro catheter colonization. There was no significant difference in the percentage reduction of adherent cells obtained by both light emission measurement and viable cell count techniques.


Subject(s)
Bacterial Adhesion , Escherichia coli/physiology , Luminescent Measurements , Bacterial Adhesion/drug effects , Ciprofloxacin/pharmacology , Glycocalyx/metabolism , Green Fluorescent Proteins/genetics
9.
Clin Vaccine Immunol ; 16(2): 147-55, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19091991

ABSTRACT

The gamma interferon (IFN-gamma) enzyme-linked immunospot (ELISPOT) assay is used routinely to evaluate the potency of human immunodeficiency virus (HIV) vaccine candidates and other vaccine candidates. In order to compare candidates and pool data from multiple trial laboratories, validated standardized methods must be applied across laboratories. Proficiency panels are a key part of a comprehensive quality assurance program to monitor inter- and intralaboratory performance, as well as assay performance, over time. Seven International AIDS Vaccine Initiative-sponsored trial sites participated in the proficiency panels described in this study. At each laboratory, two operators independently processed identical sample sets consisting of frozen peripheral blood mononuclear cell (PBMC) samples from different donors by using four blind stimuli. PBMC recovery and viability after overnight resting and the IFN-gamma ELISPOT assay performance were assessed. All sites demonstrated good performance in PBMC thawing and resting, with a median recovery of 78% and median viability of 95%. The laboratories were able to detect similar antigen-specific T-cell responses, ranging from 50 to >3,000 spot-forming cells per million PBMC. An approximate range of a half log in results from operators within or across sites was seen in comparisons of antigen-specific responses. Consistently low background responses were seen in all laboratories. The results of these proficiency panels demonstrate the ability of seven laboratories, located across three continents, to process PBMC samples and to rank volunteers with differential magnitudes of IFN-gamma ELISPOT responses. These findings also illustrate the ability to standardize the IFN-gamma ELISPOT assay across multiple laboratories when common training methods, reagents such as fetal calf serum, and standard operating procedures are adopted. These results are encouraging for laboratories that are using cell-based immunology assays to test HIV vaccines and other vaccines.


Subject(s)
AIDS Vaccines/immunology , HIV/immunology , Immunoassay/methods , Interferon-gamma/biosynthesis , Leukocytes, Mononuclear/immunology , Cell Survival , Cells, Cultured , Humans , Immunoassay/standards , Observer Variation , Reproducibility of Results , Specimen Handling/methods
10.
J Virol ; 80(10): 4717-28, 2006 May.
Article in English | MEDLINE | ID: mdl-16641265

ABSTRACT

A double-blind randomized phase I trial was conducted in human immunodeficiency virus type 1 (HIV-1)-negative subjects receiving vaccines vectored by plasmid DNA and modified vaccinia virus Ankara (MVA) expressing HIV-1 p24/p17 gag linked to a string of CD8(+) T-cell epitopes. The trial had two groups. One group received either two doses of MVA.HIVA (2x MVA.HIVA) (n=8) or two doses of placebo (2x placebo) (n=4). The second group received 2x pTHr.HIVA followed by one dose of MVA.HIVA (n=8) or 3x placebo (n=4). In the pTHr.HIVA-MVA.HIVA group, HIV-1-specific T-cell responses peaked 1 week after MVA.HIVA vaccination in both ex vivo gamma interferon (IFN-gamma) ELISPOT (group mean, 210 spot-forming cells/10(6) cells) and proliferation (group mean stimulation index, 37), with assays detecting positive responses in four out of eight and five out of eight subjects, respectively. No HIV-1-specific T-cell responses were detected in either assay in the 2x MVA.HIVA group or subjects receiving placebo. Using a highly sensitive and reproducible cultured IFN-gamma ELISPOT assay, positive responses mainly mediated by CD4(+) T cells were detected in eight out of eight vaccinees in the pTHr.HIVA-MVA.HIVA group and four out of eight vaccinees in the 2x MVA.HIVA group. Importantly, no false-positive responses were detected in the eight subjects receiving placebo. Of the 12 responders, 11 developed responses to previously identified immunodominant CD4(+) T-cell epitopes, with 6 volunteers having responses to more than one epitope. Five out of 12 responders also developed CD8(+) T-cell responses to the epitope string. Induced T cells produced a variety of anti-viral cytokines, including tumor necrosis factor alpha and macrophage inflammatory protein 1 beta. These data demonstrate that prime-boost vaccination with recombinant DNA and MVA vectors can induce multifunctional HIV-1-specific T cells in the majority of vaccinees.


Subject(s)
AIDS Vaccines/immunology , CD8-Positive T-Lymphocytes/immunology , Cell Proliferation , Epitopes, T-Lymphocyte/immunology , Gene Products, gag/immunology , Immunization, Secondary , Lymphocyte Activation/immunology , Vaccines, DNA/immunology , AIDS Vaccines/genetics , Amino Acid Sequence , CD8-Positive T-Lymphocytes/cytology , CD8-Positive T-Lymphocytes/metabolism , Cells, Cultured , Double-Blind Method , Epitopes, T-Lymphocyte/metabolism , Gene Products, gag/metabolism , Genetic Vectors , HIV Infections/prevention & control , HIV-1/genetics , HIV-1/immunology , Humans , Molecular Sequence Data , Vaccines, DNA/genetics , Vaccines, Synthetic/genetics , Vaccines, Synthetic/immunology , Vaccinia virus/genetics , Vaccinia virus/immunology
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