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1.
Placenta ; 99: 101-107, 2020 09 15.
Article in English | MEDLINE | ID: mdl-32784052

ABSTRACT

OBJECTIVES: To investigate associations between placental volume (PV) at 11 weeks' gestation and offspring bone outcomes at birth, 6 years and 8 years. METHODS: 3D ultrasound scanning was used to assess 11 week PV in a subset (n = 236) of the Southampton Women's Survey (a prospective mother-offspring cohort). Maternal anthropometric measures and lifestyle information were obtained pre-pregnancy and at 11 weeks' gestation. Offspring dual-energy x-ray absorptiometry scanning was performed within 2 weeks postnatally and at 6 and 8 years. Linear regression was used to assess associations between PV and bone outcomes, adjusting for offspring age at DXA and sex, and maternal age, height, smoking status, walking speed and triceps skinfold thickness. ß are SD change in bone outcome per SD change in PV. RESULTS: In adjusted models, 11 week PV was positively associated with bone area (BA) at all time points, with evidence of persisting associations with increasing childhood age (birth: n = 80, ß = 0.23 [95%CI = 0.03, 0.42], 6 years: n = 110, ß = 0.17 [-0.01, 0.36], 8 years: n = 85, ß = 0.13 [-0.09, 0.36]). Similar associations between 11 week PV and bone mineral content (BMC) were observed. Associations with size-corrected bone mineral content were weaker at birth but strengthened in later childhood (birth: n = 78, ß = 0.07 [-0.21, 0.35], 6 years: n = 107, ß = 0.13 [-0.08, 0.34], 8 years: n = 71, ß = 0.19 [-0.05, 0.43]). CONCLUSIONS: 11 week PV is associated with DXA bone measures at birth, with evidence of persisting associations into later childhood. Further work is required to elucidate the contributions of placental morphology and function to gestational influences on skeletal development.


Subject(s)
Bone and Bones/diagnostic imaging , Placenta/diagnostic imaging , Absorptiometry, Photon , Adult , Bone Density/physiology , Child , Female , Follow-Up Studies , Health Surveys , Humans , Organ Size/physiology , Pregnancy , Pregnancy Trimester, First , Ultrasonography, Prenatal
2.
Br J Anaesth ; 121(4): 876-882, 2018 Oct.
Article in English | MEDLINE | ID: mdl-30236249

ABSTRACT

BACKGROUND: Fascial layers of the neurovascular sheath containing the brachial plexus influence distribution of local anaesthetic, hence increasing the risk of block failure when performing infraclavicular brachial plexus block (ICB). METHODS: Ultrasound-guided infraclavicular brachial plexus block was performed on cadavers using a single injection technique with dye (20-30 ml). After injection, we carried out consecutive dissection of the neurovascular bundle to study dye injectate spread and identify the presence of fascial layers. Ultrasound video images (scout scan and injection) and recordings of dissections were evaluated by independent experts (regional anaesthetists and anatomists). RESULTS: Well defined fascial layers were identified at dissection in seven out of 12 infraclavicular spaces studied. These fascial layers impeded the spread of dye injectate substantially in six cases and partially in one case. No fascial layers were identified at dissection in five cases, in each of which the spread of injectate was complete throughout the neurovascular bundle. The sensitivity and specificity of ultrasonography and haptic sensation for detection of fascial layers were poor. CONCLUSIONS: When fascial layers are present in the neurovascular sheath, they impede the spread of injectate during infraclavicular brachial plexus block. Ultrasound detection of these fascial layers is unreliable in cadavers. These findings support the use of greater volumes of injectate or a multiple injection technique when performing this block.


Subject(s)
Brachial Plexus Block/methods , Brachial Plexus/diagnostic imaging , Ultrasonography, Interventional/methods , Aged , Aged, 80 and over , Anesthesia, Conduction , Cadaver , Coloring Agents , Female , Humans , Injections , Male , Middle Aged , Sensitivity and Specificity
3.
Anal Chim Acta ; 967: 93-101, 2017 May 15.
Article in English | MEDLINE | ID: mdl-28390491

ABSTRACT

High performance liquid chromatography coupled with post column derivatisation (HPLC-PCD) may be used to profile the antioxidant content of a sample. There are, however, drawbacks in the use of HPLC-PCD setups; namely the high volume reaction coils that are typically used lowering the observed separation efficiency. Reaction flow chromatography has the ability to overcome these inefficiencies by using a more efficient mixing technique inside the outlet fitting itself, post column reaction loops can be removed with resulting improvement in signal to noise response, plus the separation efficiency is maintained. We assessed two methods of HPLC-PCD antioxidant analysis based on the ferric reducing antioxidant power (FRAP) assay in both conventional and reaction flow HPLC-PCD modes. It was found that the reaction flow technique demonstrated significant advantages over the conventional technique in terms of signal to noise, linear range, precision and observed separation efficiency.

4.
Ir J Med Sci ; 186(4): 903-908, 2017 Nov.
Article in English | MEDLINE | ID: mdl-28168639

ABSTRACT

BACKGROUND: Vernakalant hydrochloride is a rapid-acting antiarrhythmic drug licensed in the EU since 2010 for the conversion of recent-onset atrial fibrillation with proven efficacy and safety when compared with placebo and amiodarone in randomized clinical trials. AIMS: The aim of our study was to determine the feasibility of same day discharge (following 2 h monitoring) from the emergency department after successful cardioversion using vernakalant hydrochloride. METHODS: Patients with recent-onset atrial fibrillation treated in the emergency department of a large Dublin academic teaching hospital. Patients received a maximum of two weight based 10 min infusions of vernakalant. Hypotensive events (>30% initial blood pressure), arrhythmias, conversion rates, and time to conversion were recorded. RESULTS: Sinus rhythm was restored in 35 out of 42 patients (83%) in an average of 8.8 min (median 8 min), average CHA2DS2-VASc of 0.92, HAS-BLED of 0.21 and average symptoms duration of 12 h. There were no hypotensive or arrhythmogenic events. 41 out of 42 patients were discharged after 2 h of monitoring. CONCLUSIONS: Vernakalant hydrochloride has provided a quick, safe, and practical means of achieving rapid restoration of sinus rhythm in our ED population with stable recent-onset AF who would otherwise not have undergone routine electrically cardioversion and same day discharge.


Subject(s)
Anisoles/therapeutic use , Anti-Arrhythmia Agents/therapeutic use , Atrial Fibrillation/drug therapy , Electric Countershock/methods , Patient Discharge/trends , Pyrrolidines/therapeutic use , Adult , Aged , Aged, 80 and over , Anisoles/pharmacology , Anti-Arrhythmia Agents/pharmacology , Emergency Service, Hospital , Humans , Male , Middle Aged , Pyrrolidines/pharmacology , Treatment Outcome
5.
Anaesthesia ; 70(8): 1005-6, 2015 Aug.
Article in English | MEDLINE | ID: mdl-26152263
6.
Br J Nutr ; 113(12): 1903-10, 2015 Jun 28.
Article in English | MEDLINE | ID: mdl-25940599

ABSTRACT

Both maternal 25-hydroxyvitamin D (25(OH)D) concentrations during pregnancy and placental amino acid transporter gene expression have been associated with development of the offspring in terms of body composition and bone structure. Several amino acid transporter genes have vitamin D response elements in their promoters suggesting the possible linkage of these two mechanisms. We aimed to establish whether maternal 25(OH)D and vitamin D-binding protein (VDBP) levels relate to expression of placental amino acid transporters. RNA was extracted from 102 placental samples collected in the Southampton Women's Survey, and gene expression was analysed using quantitative real-time PCR. Gene expression data were normalised to the geometric mean of three housekeeping genes, and related to maternal factors and childhood body composition. Maternal serum 25(OH)D and VDBP levels were measured by radioimmunoassay. Maternal 25(OH)D and VDBP levels were positively associated with placental expression of specific genes involved in amino acid transport. Maternal 25(OH)D and VDBP concentrations were correlated with the expression of specific placental amino acid transporters, and thus may be involved in the regulation of amino acid transfer to the fetus. The positive correlation of VDBP levels and placental transporter expression suggests that delivery of vitamin D to the placenta may be important. This exploratory study identifies placental amino acid transporters which may be altered in response to modifiable maternal factors and provides a basis for further studies.


Subject(s)
Amino Acids/metabolism , Placenta/metabolism , Vitamin D-Binding Protein/physiology , Vitamin D/physiology , Adult , Amino Acid Transport Systems/genetics , Biological Transport , Body Composition , Cohort Studies , Female , Gene Expression/physiology , Gestational Age , Health Surveys , Humans , Infant, Newborn , Male , Maternal-Fetal Exchange , Placenta/chemistry , Pregnancy , RNA, Messenger/analysis , United Kingdom , Vitamin D/analogs & derivatives , Vitamin D/blood , Vitamin D-Binding Protein/blood , Women's Health , Young Adult
7.
Mol Psychiatry ; 18(3): 340-6, 2013 Mar.
Article in English | MEDLINE | ID: mdl-22212596

ABSTRACT

We conducted a systematic study of top susceptibility variants from a genome-wide association (GWA) study of bipolar disorder to gain insight into the functional consequences of genetic variation influencing disease risk. We report here the results of experiments to explore the effects of these susceptibility variants on DNA methylation and mRNA expression in human cerebellum samples. Among the top susceptibility variants, we identified an enrichment of cis regulatory loci on mRNA expression (eQTLs), and a significant excess of quantitative trait loci for DNA CpG methylation, hereafter referred to as methylation quantitative trait loci (mQTLs). Bipolar disorder susceptibility variants that cis regulate both cerebellar expression and methylation of the same gene are a very small proportion of bipolar disorder susceptibility variants. This finding suggests that mQTLs and eQTLs provide orthogonal ways of functionally annotating genetic variation within the context of studies of pathophysiology in brain. No lymphocyte mQTL enrichment was found, suggesting that mQTL enrichment was specific to the cerebellum, in contrast to eQTLs. Separately, we found that using mQTL information to restrict the number of single-nucleotide polymorphisms studied enhances our ability to detect a significant association. With this restriction a priori informed by the observed functional enrichment, we identified a significant association (rs12618769, P(bonferroni)<0.05) from two other GWA studies (TGen+GAIN; 2191 cases and 1434 controls) of bipolar disorder, which we replicated in an independent GWA study (WTCCC). Collectively, our findings highlight the importance of integrating functional annotation of genetic variants for gene expression and DNA methylation to advance the biological understanding of bipolar disorder.


Subject(s)
Bipolar Disorder/genetics , DNA Methylation/genetics , Gene Expression Regulation/genetics , Genetic Predisposition to Disease/genetics , Quantitative Trait Loci/genetics , Cerebellum/metabolism , Genome-Wide Association Study , Humans , Methylation , Polymorphism, Single Nucleotide/genetics
8.
Transl Psychiatry ; 2: e180, 2012 Oct 23.
Article in English | MEDLINE | ID: mdl-23092984

ABSTRACT

Mood-incongruent psychotic features (MICP) are familial symptoms of bipolar disorder (BP) that also occur in schizophrenia (SZ), and may represent manifestations of shared etiology between the major psychoses. In this study we have analyzed three large samples of BP with imputed genome-wide association data and have performed a meta-analysis of 2196 cases with MICP and 8148 controls. We found several regions with suggestive evidence of association (P<10(-6)), although no marker met genome-wide significance criteria. The top associations were on chromosomes: 6q14.2 within the PRSS35/SNAP91 gene complex (rs1171113, P=9.67 × 10(-8)); 3p22.2 downstream of TRANK/LBA1 (rs9834970, P=9.71 × 10(-8)); and 14q24.2 in an intron of NUMB (rs2333194, P=7.03 × 10(-7)). These associations were present in all three samples, and both rs1171113 and rs2333194 were found to be overrepresented in an analysis of MICP cases compared with all other BP cases. To test the relationship of MICP with SZ, we performed polygenic analysis using the Psychiatric GWAS Consortium SZ results and found evidence of association between SZ polygenes and the presence of MICP in BP cases (meta-analysis P=0.003). In summary, our analysis of the MICP phenotype in BP has provided suggestive evidence for association of common variants in several genes expressed in the nervous system. The results of our polygenic analysis provides support for a modest degree of genetic overlap between BP with MICP and SZ, highlighting that phenotypic correlations across syndromes may be due to the influence of polygenic risk factors.


Subject(s)
Bipolar Disorder/genetics , Antigens/genetics , Case-Control Studies , Chromosomes, Human, Pair 14/genetics , Chromosomes, Human, Pair 3/genetics , Chromosomes, Human, Pair 6/genetics , Genome-Wide Association Study , Humans , Membrane Proteins/genetics , Monomeric Clathrin Assembly Proteins/genetics , Nerve Tissue Proteins/genetics , Schizophrenia/genetics , Serine Proteases/genetics
9.
J Clin Endocrinol Metab ; 97(11): E2070-7, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22990090

ABSTRACT

CONTEXT: Vitamin D deficiency during pregnancy may be associated with suboptimal fetal growth, but direct evidence is lacking. OBJECTIVES: The aim of the study was to validate a method for fetal femur volume (FV) measurement using three-dimensional ultrasound and to detect correlations between FV and maternal vitamin D concentration. DESIGN, SETTING, AND PARTICIPANTS: A novel method for assessing FV consists of three ultrasound measurements-femur length, proximal metaphyseal diameter (PMD), and midshaft diameter-and a volume equation; this was validated by comparing ultrasound to computed tomography measurements in six pregnancies after mid-trimester termination. This method was then applied in a cohort of healthy pregnant women participating in the Southampton Women Survey. Fetal three-dimensional ultrasound and maternal 25-hydroxyvitamin D [25(OH)D] levels were performed at 34 wk; dual-energy x-ray absorptiometry of the newborn was performed shortly after birth. Univariate and multiple linear regression analyses were performed between maternal characteristics and fetal outcomes. MAIN OUTCOME MEASURES: We performed ultrasound measurements of the fetal femur. RESULTS: In 357 pregnant participants, serum 25(OH)D correlated significantly with FV (P = 0.006; r = 0.147) and PMD (P = 0.001; r = 0.176); FV also demonstrated positive univariate correlations with maternal height (P < 0.001; r = 0.246), weight (P = 0.003; r = 0.160), triceps skinfold thickness (P = 0.013; r = 0.134), and a borderline negative effect from smoking (P = 0.061). On multiple regression, independent predictors of FV were the maternal height and triceps skinfold thickness; the effect of 25(OH)D on FV was attenuated, but it remained significant for PMD. CONCLUSION: Using a novel method for assessing FV, independent predictors of femoral size were maternal height, adiposity, and serum vitamin D. Future trials should establish whether pregnancy supplementation with vitamin D is beneficial for the fetal skeleton, using FV and PMD as fetal outcome measures.


Subject(s)
Bone Density/physiology , Femur/diagnostic imaging , Fetal Development/physiology , Vitamin D/blood , Absorptiometry, Photon , Adult , Female , Femur/metabolism , Humans , Longitudinal Studies , Pregnancy , Ultrasonography, Prenatal
10.
Placenta ; 33(8): 623-629, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22640438

ABSTRACT

OBJECTIVES: In this study we investigate the relationships between placental size and neonatal bone mass and body composition, in a population-based cohort. STUDY DESIGN: 914 mother-neonate pairs were included. Placental dimensions were measured via ultrasound at 19 weeks gestation. Dual X-ray absorptiometry (DXA) was performed on the neonates within the first two weeks of life. RESULTS: We observed positive relationships between placental volume at 19 weeks, and neonatal bone area (BA; r = 0.26, p < 0.001), bone mineral content (BMC; r = 0.25, p < 0.001) and bone mineral density (BMD; r = 0.10, p = 0.001). Thus placental volume accounted for 6.25% and 1.2% of the variation in neonatal BMC and BMD respectively at birth. These associations remained after adjustment for maternal factors previously shown to be associated with neonatal bone mineral accrual (maternal height, smoking, walking speed in late pregnancy, serum 25(OH) vitamin D and triceps skinfold thickness). CONCLUSIONS: We found that placental volume at 19 weeks gestation was positively associated with neonatal bone size and mineral content. These relationships appeared independent of those maternal factors known to be associated with neonatal bone mass, consistent with notion that such maternal influences might act through modulation of aspects of placental function, e.g. utero-placental blood flow or maternal nutrient concentrations, rather than placental size itself. Low placental volume early in pregnancy may be a marker of a reduced postnatal skeletal size and increased risk of later fracture.


Subject(s)
Osteogenesis , Placenta/anatomy & histology , Placentation , Adult , Bone Density , Calcification, Physiologic , Cohort Studies , England , Female , Fetal Growth Retardation/etiology , Health Surveys , Humans , Infant, Newborn , Longitudinal Studies , Male , Organ Size , Placenta/diagnostic imaging , Placental Insufficiency/physiopathology , Pregnancy , Pregnancy Trimester, Second , Prospective Studies , Ultrasonography, Prenatal
11.
Bone ; 50(1): 337-42, 2012 Jan.
Article in English | MEDLINE | ID: mdl-22100507

ABSTRACT

Alterations in expression of the imprinted gene PHLDA2 are linked to low birth weight in both humans and the mouse. However birth weight is a summary measure of fetal growth and provides little information on the growth rate of the fetus in early and late pregnancy. To examine the relation of PHLDA2 expression with rates of fetal growth and explore associations with the infant's body composition in early childhood, we measured PHLDA2 mRNA levels in the term placenta of 102 infants whose mothers were participating in the Southampton Women's Survey (SWS). Higher PHLDA2 expression was associated with a lower fetal femur growth velocity between 19 and 34 weeks gestation. In addition, higher placental PHLDA2 gene expression was associated with a lower child's bone mineral content at four years of age, measured using dual-energy X-ray absorptiometry. The results suggest that placental PHLDA2 may provide a biomarker for suboptimal skeletal growth in pregnancies uncomplicated by overt fetal growth restriction.


Subject(s)
Bone Density , Fetus/anatomy & histology , Fetus/physiology , Genomic Imprinting , Nuclear Proteins/genetics , Nuclear Proteins/metabolism , Placenta/physiology , Absorptiometry, Photon , Adult , Animals , Birth Weight/genetics , Body Composition/genetics , Child , Child, Preschool , Female , Gestational Age , Humans , Mice , Pregnancy
12.
Mol Psychiatry ; 17(4): 433-44, 2012 Apr.
Article in English | MEDLINE | ID: mdl-21423239

ABSTRACT

The heritable component to attempted and completed suicide is partly related to psychiatric disorders and also partly independent of them. Although attempted suicide linkage regions have been identified on 2p11-12 and 6q25-26, there are likely many more such loci, the discovery of which will require a much higher resolution approach, such as the genome-wide association study (GWAS). With this in mind, we conducted an attempted suicide GWAS that compared the single-nucleotide polymorphism (SNP) genotypes of 1201 bipolar (BP) subjects with a history of suicide attempts to the genotypes of 1497 BP subjects without a history of suicide attempts. In all, 2507 SNPs with evidence for association at P<0.001 were identified. These associated SNPs were subsequently tested for association in a large and independent BP sample set. None of these SNPs were significantly associated in the replication sample after correcting for multiple testing, but the combined analysis of the two sample sets produced an association signal on 2p25 (rs300774) at the threshold of genome-wide significance (P=5.07 × 10(-8)). The associated SNPs on 2p25 fall in a large linkage disequilibrium block containing the ACP1 (acid phosphatase 1) gene, a gene whose expression is significantly elevated in BP subjects who have completed suicide. Furthermore, the ACP1 protein is a tyrosine phosphatase that influences Wnt signaling, a pathway regulated by lithium, making ACP1 a functional candidate for involvement in the phenotype. Larger GWAS sample sets will be required to confirm the signal on 2p25 and to identify additional genetic risk factors increasing susceptibility for attempted suicide.


Subject(s)
Bipolar Disorder/genetics , Bipolar Disorder/psychology , Genetic Predisposition to Disease/genetics , Genome-Wide Association Study/statistics & numerical data , Protein Tyrosine Phosphatases/genetics , Proto-Oncogene Proteins/genetics , Suicide, Attempted/psychology , Brain/metabolism , Case-Control Studies , Female , Genome-Wide Association Study/methods , Genotype , Humans , Male , Polymorphism, Single Nucleotide , Protein Tyrosine Phosphatases/metabolism , Proto-Oncogene Proteins/metabolism
13.
Anaesthesia ; 63(12): 1309-13, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19032298

ABSTRACT

SUMMARY: In this prospective observational study we examined the potential of the spectral entropy measures 'state' and 'response' entropy (Entropy monitor), as measures of sleep depth in 12 healthy adult subjects. Both median state and response entropy values varied significantly with sleep stage (p = 0.017 and p = 0.014 respectively; ANOVA). Median state or response entropy did not decrease significantly during the transition from awake to stage I sleep (p > 0.017). State entropy values decreased significantly between sleep stages I and II (p < 0.001). Both state and response entropy values were significantly less (40 and 45 arbitrary units respectively) in stage III (slow wave sleep) vs stage II sleep (p = 0.008). We conclude that state and response entropy values, when expressed as a function of time, may be a useful means of quantifying aspects of sleep.


Subject(s)
Polysomnography/methods , Signal Processing, Computer-Assisted , Sleep Stages , Adolescent , Adult , Electroencephalography/methods , Entropy , Female , Humans , Male , Middle Aged , Prospective Studies , Young Adult
14.
Br J Anaesth ; 101(2): 213-21, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18550642

ABSTRACT

BACKGROUND: In this study we analyse the behaviour, potential clinical application and optimal cortical sampling location of the spectral parameters: (i) relative alpha and beta power; (ii) spectral edge frequency 90%; and (iii) spectral entropy as monitors of moderate propofol-induced sedation. METHODS: Multi-channel EEG recorded from 12 ASA 1 (American Society of Anesthesiologists physical status 1) patients during low-dose, target effect-site controlled propofol infusion was used for this analysis. The initial target effect-site concentration was 0.5 microg ml(-1) and increased at 4 min intervals in increments of 0.5 to 2 microg ml(-1). EEG parameters were calculated for 2 s epochs in the frequency ranges 0.5-32 and 0.5-47 Hz. All parameters were calculated in the channels: P4-O2, P3-O1, F4-C4, F3-C3, F3-F4, and Fp1-Fp2. Sedation was assessed clinically using the OAA/S (observer's assessment of alertness/sedation) scale. RESULTS: Relative beta power and spectral entropy increased with increasing propofol effect-site concentration in both the 0.5-47 Hz [F(18, 90) = 3.455, P<0.05 and F(18, 90) = 3.33, P<0.05, respectively] and 0.5-32 Hz frequency range. This effect was significant in each individual channel (P<0.05). No effect was seen of increasing effect-site concentration on relative power in the alpha band. Averaged across all channels, spectral entropy did not outperform relative beta power in either the 0.5-32 Hz [Pk=0.79 vs 0.814 (P>0.05)] or 0.5-47 Hz range [Pk=0.81 vs 0.82 (P>0.05)]. The best performing indicator in any single channel was spectral entropy in the frequency range 0.5-47 Hz in the frontal channel F3-F4 (Pk=0.85). CONCLUSIONS: Relative beta power and spectral entropy when considered over the propofol effect-site range studied here increase in value, and correlate well with clinical assessment of sedation.


Subject(s)
Electroencephalography/drug effects , Hypnotics and Sedatives/pharmacology , Propofol/pharmacology , Adolescent , Adult , Aged , Conscious Sedation/methods , Dose-Response Relationship, Drug , Electroencephalography/methods , Entropy , Humans , Hypnotics and Sedatives/administration & dosage , Middle Aged , Monitoring, Intraoperative/methods , Propofol/administration & dosage , Signal Processing, Computer-Assisted
15.
Article in English | MEDLINE | ID: mdl-18002673

ABSTRACT

A method is presented for the automatic determination of a patient's level of sedation from the EEG. Six bipolar channels of EEG recorded from 12 adult patients sedated with low-dose propofol (2, 6-disopropylphenol) were used to develop a linear discriminant based system for depth of sedation monitoring using a number of quantitative EEG measures. A cross fold validation estimate of the performance of the algorithm as a patient independent system yielded a sensitivity of 74.70% and a specificity of 81.67%. It is hoped that the methodology reported here could lead to fully automated systems for depth of sedation monitoring.


Subject(s)
1-Propanol , Brain/physiopathology , Drug Monitoring/methods , Electroencephalography/drug effects , Electroencephalography/methods , Unconsciousness/diagnosis , Unconsciousness/physiopathology , Adult , Algorithms , Anesthesia/methods , Artificial Intelligence , Brain/drug effects , Discriminant Analysis , Female , Humans , Hypnotics and Sedatives , Male , Pattern Recognition, Automated/methods
16.
Br J Cancer ; 96(2): 373-82, 2007 Jan 29.
Article in English | MEDLINE | ID: mdl-17242705

ABSTRACT

Pancreatic ductal adenocarcinoma (PDAC) is characterised pathologically by a marked desmoplastic stromal reaction that significantly reduces the sensitivity and specificity of cytogenetic analysis. To identify genetic alterations that reflect the characteristics of the tumour in vivo, we screened a total of 23 microdissected PDAC tissue samples using array-based comparative genomic hybridisation (array CGH) with 1 Mb resolution. Highly stringent statistical analysis enabled us to define the regions of nonrandom genomic changes. We detected a total of 41 contiguous regions (>3.0 Mb) of copy number changes, such as a genetic gain at 7p22.2-p15.1 (26.0 Mb) and losses at 17p13.3-p11.2 (13.6 Mb), 18q21.2-q22.1 (12.0 Mb), 18q22.3-q23 (7.1 Mb) and 18q12.3-q21.2 (6.9 Mb). To validate our array CGH results, fluorescence in situ hybridisation was performed using four probes from those regions, showing that these genetic alterations were observed in 37-68% of a separate sample set of 19 PDAC cases. In particular, deletion of the SEC11L3 gene (18q21.32) was detected at a very high frequency (13 out of 19 cases; 68%) and in situ RNA hybridisation for this gene demonstrated a significant correlation between deletion and expression levels. It was further confirmed by reverse transcription-PCR that SEC11L3 mRNA was downregulated in 16 out of 16 PDAC tissues (100%). In conclusion, the combination of tissue microdissection and array CGH provided a valid data set that represents in vivo genetic changes in PDAC. Our results raise the possibility that the SEC11L3 gene may play a role as a tumour suppressor in this disease.


Subject(s)
Nucleic Acid Hybridization , Pancreatic Neoplasms/genetics , Tissue Array Analysis , Aged , Base Sequence , Cell Line, Tumor , Chromosome Mapping , DNA Primers , Female , Humans , In Situ Hybridization, Fluorescence , Male , Middle Aged , Pancreatic Neoplasms/pathology , Reverse Transcriptase Polymerase Chain Reaction
17.
Oncogene ; 26(14): 2082-94, 2007 Mar 29.
Article in English | MEDLINE | ID: mdl-17043657

ABSTRACT

Pancreatic ductal adenocarcinoma is a devastating disease, characterized by a rapid progression and poor treatment response. Using gene expression profiling of pancreatic cancer tissues, we previously identified periostin as a potential diagnostic and therapeutic target. In this study, we report the overexpression of periostin in a larger set of pancreatic cancer tissues and show that although the periostin transcript is exclusively expressed in tumour cells, the protein product is only detected in the extracellular matrix adjacent to cancer cells. Using an enzyme-linked immunosorbent assay (ELISA) assay, we show significantly increased levels of periostin in the sera of pancreatic cancer patients compared to non-cancer controls. We demonstrate that periostin promotes the invasiveness of tumour cells by increasing the motility of cells without inducing expression of proteases, and enhances the survival of tumour cells exposed to hypoxic conditions. At the molecular level, we provide evidence that the alpha(6)beta(4) integrin complex acts as the cell receptor of periostin in pancreatic cancer cells and that interaction promotes phosphorylation of focal adhesion kinase (FAK) and protein kinase B (AKT) though activation of the PI3 kinase pathway, but not the RAS/MEK/ERK pathway. These findings suggest an important role of periostin in pancreatic cancer and provide a rationale to study periostin for diagnostic and therapeutic applications.


Subject(s)
Carcinoma, Pancreatic Ductal/pathology , Cell Adhesion Molecules/physiology , Integrin beta4/metabolism , Pancreatic Neoplasms/pathology , Phosphatidylinositol 3-Kinases/metabolism , Apoptosis , Carcinoma, Pancreatic Ductal/chemistry , Carcinoma, Pancreatic Ductal/metabolism , Cell Adhesion Molecules/analysis , Cell Adhesion Molecules/genetics , Cell Line, Tumor , Cell Movement/genetics , Focal Adhesion Kinase 1/metabolism , Humans , Hypoxia/metabolism , Integrin alpha6beta4/metabolism , Neoplasm Invasiveness , Pancreatic Neoplasms/chemistry , Pancreatic Neoplasms/metabolism , Phosphorylation , Proto-Oncogene Proteins c-akt/metabolism , RNA, Messenger/analysis , RNA, Messenger/metabolism , Transcription, Genetic
18.
Genes Dev ; 15(20): 2675-86, 2001 Oct 15.
Article in English | MEDLINE | ID: mdl-11641274

ABSTRACT

Hypoxia-inducible factor 1 (HIF-1) is a master regulator of oxygen homeostasis that controls angiogenesis, erythropoiesis, and glycolysis via transcriptional activation of target genes under hypoxic conditions. O(2)-dependent binding of the von Hippel-Lindau (VHL) tumor suppressor protein targets the HIF-1alpha subunit for ubiquitination and proteasomal degradation. The activity of the HIF-1alpha transactivation domains is also O(2) regulated by a previously undefined mechanism. Here, we report the identification of factor inhibiting HIF-1 (FIH-1), a protein that binds to HIF-1alpha and inhibits its transactivation function. In addition, we demonstrate that FIH-1 binds to VHL and that VHL also functions as a transcriptional corepressor that inhibits HIF-1alpha transactivation function by recruiting histone deacetylases. Involvement of VHL in association with FIH-1 provides a unifying mechanism for the modulation of HIF-1alpha protein stabilization and transcriptional activation in response to changes in cellular O(2) concentration.


Subject(s)
Cell Hypoxia/physiology , Ligases/metabolism , Nuclear Proteins/metabolism , Repressor Proteins/metabolism , Saccharomyces cerevisiae Proteins , Transcription Factors/genetics , Transcription Factors/metabolism , Tumor Suppressor Proteins , Ubiquitin-Protein Ligases , Amino Acid Sequence , Animals , Cells, Cultured , DNA Primers/chemistry , DNA-Binding Proteins , Fungal Proteins/metabolism , Gene Expression Regulation , Glutathione Transferase/metabolism , Histone Deacetylases/metabolism , Humans , Hypoxia-Inducible Factor 1, alpha Subunit , In Vitro Techniques , Luciferases/metabolism , Mixed Function Oxygenases , Molecular Sequence Data , Nuclear Proteins/genetics , Oxygen/metabolism , Polymerase Chain Reaction , Protein Conformation , Rabbits , Repressor Proteins/genetics , Reticulocytes/metabolism , Saccharomyces cerevisiae , Sequence Homology, Amino Acid , Signal Transduction/physiology , Transcription, Genetic , Transcriptional Activation , Two-Hybrid System Techniques , Von Hippel-Lindau Tumor Suppressor Protein
19.
Electrophoresis ; 22(10): 2075-85, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11465508

ABSTRACT

Quantitative two-dimensional polyacrylamide gel electrophoresis (2-D PAGE) is used to determine changes in individual protein levels in complex protein mixtures. To provide reliable data, the software used for 2-D gel image analysis must provide a linear response over a wide dynamic range of data output. Here, we show that Phoretix 2D Full analysis of 2-D gels stained with colloidal Coomassie Brilliant Blue G-250 can provide a linear measure of changes in protein quantity. We show using a complex mixture of Arabidopsis thaliana proteins, that this is true for essentially all focused proteins, in a data output range greater than three orders of magnitude. An analysis of the factors that affect errors in the results demonstrated that reproducibility of the data is significantly improved by user seeding, whereas it is reduced by use of the background subtraction algorithms.


Subject(s)
Electrophoresis, Gel, Two-Dimensional/methods , Proteins/analysis , Software , Algorithms , Animals , Arabidopsis Proteins/analysis , Cattle , Electrophoresis, Gel, Two-Dimensional/statistics & numerical data , Image Processing, Computer-Assisted/methods , Image Processing, Computer-Assisted/statistics & numerical data , Proteome/analysis , Reproducibility of Results , Rosaniline Dyes
20.
Mol Cell Biol ; 21(12): 3995-4004, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11359907

ABSTRACT

Hypoxia-inducible factor 1 (HIF-1) is a transcriptional activator composed of HIF-1alpha and HIF-1beta subunits. Several dozen HIF-1 targets are known, including the gene encoding vascular endothelial growth factor (VEGF). Under hypoxic conditions, HIF-1alpha expression increases as a result of decreased ubiquitination and degradation. The tumor suppressors VHL (von Hippel-Lindau protein) and p53 target HIF-1alpha for ubiquitination such that their inactivation in tumor cells increases the half-life of HIF-1alpha. Increased phosphatidylinositol 3-kinase (PI3K) and AKT or decreased PTEN activity in prostate cancer cells also increases HIF-1alpha expression by an undefined mechanism. In breast cancer, increased activity of the HER2 (also known as neu) receptor tyrosine kinase is associated with increased tumor grade, chemotherapy resistance, and decreased patient survival. HER2 has also been implicated as an inducer of VEGF expression. Here we demonstrate that HER2 signaling induced by overexpression in mouse 3T3 cells or heregulin stimulation of human MCF-7 breast cancer cells results in increased HIF-1alpha protein and VEGF mRNA expression that is dependent upon activity of PI3K, AKT (also known as protein kinase B), and the downstream kinase FRAP (FKBP-rapamycin-associated protein). In contrast to other inducers of HIF-1 expression, heregulin stimulation does not affect the half-life of HIF-1alpha but instead stimulates HIF-1alpha synthesis in a rapamycin-dependent manner. The 5'-untranslated region of HIF-1alpha mRNA directs heregulin-inducible expression of a heterologous protein. These data provide a molecular basis for VEGF induction and tumor angiogenesis by heregulin-HER2 signaling and establish a novel mechanism for the regulation of HIF-1alpha expression.


Subject(s)
DNA-Binding Proteins/biosynthesis , Endothelial Growth Factors/genetics , Lymphokines/genetics , Nuclear Proteins/biosynthesis , Protein Serine-Threonine Kinases , Receptor, ErbB-2/metabolism , Transcription Factors , 3T3 Cells , Animals , Ataxia Telangiectasia Mutated Proteins , Breast Neoplasms/genetics , Breast Neoplasms/metabolism , Cell Cycle Proteins/metabolism , Cell Hypoxia , Female , Gene Expression , Humans , Hypoxia-Inducible Factor 1 , Hypoxia-Inducible Factor 1, alpha Subunit , Male , Mice , Neuregulin-1/pharmacology , Phosphatidylinositol 3-Kinases/metabolism , Proto-Oncogene Proteins/metabolism , Proto-Oncogene Proteins c-akt , RNA, Messenger/genetics , RNA, Messenger/metabolism , RNA, Neoplasm/genetics , RNA, Neoplasm/metabolism , Receptor, ErbB-2/genetics , Signal Transduction , Tumor Cells, Cultured , Vascular Endothelial Growth Factor A , Vascular Endothelial Growth Factors
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