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1.
Biol Pharm Bull ; 46(7): 1010-1014, 2023.
Article in English | MEDLINE | ID: mdl-37394631

ABSTRACT

Recently, the finding of recurrent mutations in the spliceosome components in cancer has indicated that the spliceosome is a potential target for cancer therapy. However, the number of small molecules known to affect the cellular spliceosome is currently limited probably because of the lack of a robust cell-based approach to identify small molecules that target the spliceosome. We have previously reported the development of a genetic reporter to detect the cellular levels of small nuclear ribonucleoproteins (snRNPs), which are subunits of the spliceosome, using a split luciferase. However, the original protocol was designed for small scale experiments and was not suitable for compound screening. Here, we found that the use of cell lysis buffer used in blue native polyacrylamide gel electrophoresis (BN-PAGE) dramatically improved the sensitivity and the robustness of the assay. Improved assay conditions were used to discover a small molecule that altered the reporter activity. Our method may be used with other cellular macromolecular complexes and may assist in the discovery of small bioactive molecules.


Subject(s)
RNA Splicing , Ribonucleoproteins , Ribonucleoproteins/genetics , Ribonucleoproteins/metabolism , Ribonucleoproteins, Small Nuclear/genetics , Ribonucleoproteins, Small Nuclear/metabolism , Spliceosomes/metabolism , Luciferases/genetics
2.
Biol Pharm Bull ; 46(2): 147-157, 2023.
Article in English | MEDLINE | ID: mdl-36724942

ABSTRACT

Intron recognition by the spliceosome mainly depends on conserved intronic sequences such as 5' splice sites, 3' splice sites, and branch sites. Therefore, even substitution of just a single nucleotide in a 5' or 3' splice site abolishes the splicing at the mutated site and leads to cryptic splice site usage. A number of disease-causative mutations have been found in 5' and 3' splice sites, but the genes with these mutations still maintain the correct protein-coding sequence, so recovery of splicing at the mutated splice site may produce a normal protein. Mutations in the spliceosome components have been shown to change the balance between the conformational transition and disassembly of the spliceosome, which affects the decision about whether the reaction of the incorporated substrate will proceed. In addition, the lower disassembly rate caused by such mutations induces splicing of the mutated splice site. We hypothesized that small compounds targeting the spliceosome may include a compound mimicking the effect of those mutations. Thus, we screened a small-compound library and identified a compound, BAY61-3606, that changed the cellular small nuclear ribonucleoprotein composition and also showed activity of enhancing splicing at the mutated 3' splice site of the reporter gene, as well as splicing at the suboptimal 3' splice site of endogenous cassette exons. These results indicate that further analysis of the mechanism of action of BAY61-3606 could enable modulation of the fidelity of splicing.


Subject(s)
RNA Splice Sites , Spliceosomes , RNA Splice Sites/genetics , Spliceosomes/genetics , Spliceosomes/metabolism , Ribonucleoproteins, Small Nuclear/genetics , Ribonucleoproteins, Small Nuclear/metabolism , Niacinamide , Mutation
3.
Genes Cells ; 27(1): 43-60, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34897904

ABSTRACT

Genomes of higher eukaryotes encode many uncharacterized proteins, and the functions of these proteins cannot be predicted from the primary sequences due to a lack of conserved functional domains. In this study, we focused on a poorly characterized protein UGS148 that is highly expressed in a specialized cell type called tanycytes that line the ventral wall of the third ventricle in the hypothalamus. Immunostaining of UGS148 revealed the fine morphology of tanycytes with highly branched apical ER membranes. Immunoprecipitation revealed that UGS148 associated with mitochondrial ATPase at least in vitro, and ER and mitochondrial signals occasionally overlapped in tanycytes. Mutant mice lacking UGS148 did not exhibit overt phenotypes, suggesting that UGS148 was not essential in mice reared under normal laboratory conditions. We also found that RNA probes that were predicted to uniquely detect UGS148 mRNA cross-reacted with uncharacterized RNAs, highlighting the importance of experimental validation of the specificity of probes during the hybridization-based study of RNA localization.


Subject(s)
Endoplasmic Reticulum , Membrane Proteins , Animals , Endoplasmic Reticulum/metabolism , Ependymoglial Cells/metabolism , Hypothalamus/metabolism , Membrane Proteins/genetics , Membrane Proteins/metabolism , Mice , RNA, Messenger
4.
Wiley Interdiscip Rev RNA ; 11(1): e1574, 2020 01.
Article in English | MEDLINE | ID: mdl-31680436

ABSTRACT

Phosphorylation of the RNA polymerase II C-terminal domain (Pol II CTD) has important roles in the kinetic coupling of splicing with transcription, which is essential for many genes to maintain correct splicing patterns. However, because of the extensively repeated low complexity sequences of Pol II CTD, it was unclear how phosphorylation-dependent molecular interactions were able to provide sufficient specificity to spatiotemporally partition various cotranscriptional events. Here we try to view the molecular mechanisms governing cotranscriptional splicing from the role of phase separation based on recent studies showing the ability of Pol II CTD to form droplets. This article is categorized under: RNA Processing > Splicing Regulation/Alternative Splicing RNA Processing > Splicing Mechanisms RNA Interactions with Proteins and Other Molecules > RNA-Protein Complexes.


Subject(s)
RNA Polymerase II , RNA Splicing/genetics , Transcription, Genetic/genetics , Humans , Kinetics , Phosphorylation , RNA Polymerase II/genetics , RNA Polymerase II/metabolism
5.
Bioorg Med Chem Lett ; 27(10): 2144-2147, 2017 05 15.
Article in English | MEDLINE | ID: mdl-28385506

ABSTRACT

We accomplished divergent synthesis of potent kinase inhibitor BAY 61-3606 (1) and 27 derivatives via conjugation of imidazo[1,2-c]pyrimidine and indole ring compounds with aromatic (including pyridine) derivatives by means of palladium-catalyzed cross-coupling reaction. Spleen tyrosine kinase (Syk) and germinal center kinase (Gck, MAP4K2) inhibition assays showed that some of the synthesized compounds were selective Gck inhibitors.


Subject(s)
Imidazoles/chemistry , Protein Kinase Inhibitors/chemical synthesis , Protein Serine-Threonine Kinases/antagonists & inhibitors , Pyrimidines/chemistry , Catalysis , Drug Evaluation, Preclinical , Germinal Center Kinases , Humans , Imidazoles/chemical synthesis , Imidazoles/metabolism , Indoles/chemistry , Inhibitory Concentration 50 , Niacinamide/analogs & derivatives , Niacinamide/chemistry , Niacinamide/metabolism , Palladium/chemistry , Protein Kinase Inhibitors/chemistry , Protein Kinase Inhibitors/metabolism , Protein Serine-Threonine Kinases/metabolism , Pyrimidines/chemical synthesis , Pyrimidines/metabolism , Structure-Activity Relationship , Syk Kinase/antagonists & inhibitors , Syk Kinase/metabolism
6.
Chem Biol Drug Des ; 87(2): 275-82, 2016 Feb.
Article in English | MEDLINE | ID: mdl-26348996

ABSTRACT

Removal of an intron requires precise recognition of the splice donor and acceptor sites located at the 5' and 3' termini of introns. Although the roles of these sequences differ, mutations in both sites easily block normal splicing and produce an aberrant mRNA. For example, many splice-site mutations occur in patients with inherited diseases. Several approaches have been evaluated to restore expression of a functional protein; however, because of the strict requirement for an AG dinucleotide at the 3' terminus of a U2-type intron, no method is available to correct splicing at a mutated sequence. To identify compounds that allow splicing at the non-AG acceptor site, in the present study we constructed a reporter gene with a modified polypyrimidine tract. However, the modified polypyrimidine tract mediated splicing at adjacent non-canonical acceptor sites, including the original mutated site. Further, we show that certain flavones such as luteolin and apigenin enhanced aberrant splicing at the non-canonical acceptor site of the reporter gene. These results suggest that the reporter gene and luteolin may be useful for further screening to identify molecules that correct aberrant splicing caused by a disease-associated splice acceptor site mutation.


Subject(s)
Luteolin/metabolism , RNA/metabolism , Base Sequence , Genes, Reporter , HEK293 Cells , Humans , Luteolin/chemistry , Molecular Sequence Data , RNA/chemistry , RNA Splice Sites , Reverse Transcriptase Polymerase Chain Reaction
7.
J Biol Chem ; 290(29): 17838-17847, 2015 Jul 17.
Article in English | MEDLINE | ID: mdl-26048984

ABSTRACT

DJ-1 is an oncogene and also a causative gene for familial Parkinson disease. DJ-1 has various functions, and the oxidative status of cysteine at position 106 (Cys-106) is crucial for determination of the activation level of DJ-1. Although DJ-1 requires activated Ras for its oncogenic activity and although it activates the extracellular signal-regulated kinase (ERK) pathway, a cell growth pathway downstream of Ras, the precise mechanism underlying activation of the ERK pathway by DJ-1 is still not known. In this study, we found that DJ-1 directly bound to the kinase domain of c-Raf but not to Ras and that Cys-106 mutant DJ-1 bound to c-Raf more weakly than did wild-type DJ-1. Co-localization of DJ-1 with c-Raf in the cytoplasm was enhanced in epidermal growth factor (EGF)-treated cells. Knockdown of DJ-1 expression attenuated the phosphorylation level of c-Raf in EGF-treated cells, resulting in reduced activation of MEK and ERK1/2. Although EGF-treated DJ-1 knock-out cells also showed attenuated c-Raf activation, reintroduction of wild-type DJ-1, but not C106S DJ-1, into DJ-1 knock-out cells restored c-Raf activation in a DJ-1 binding activity in a c-Raf-dependent manner. DJ-1 was not responsible for activation of c-Raf in phorbol myristate acetate-treated cells. Furthermore, DJ-1 stimulated self-phosphorylation activity of c-Raf in vitro, but DJ-1 was not a target for Raf kinase. Oxidation of Cys-106 in DJ-1 was not affected by EGF treatment. These findings showed that DJ-1 is a positive regulator of the EGF/Ras/ERK pathway through targeting c-Raf.


Subject(s)
Epidermal Growth Factor/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , MAP Kinase Signaling System , Oncogene Proteins/metabolism , Proto-Oncogene Proteins c-raf/metabolism , Animals , Cell Line , Epidermal Growth Factor/analysis , Extracellular Signal-Regulated MAP Kinases/metabolism , Humans , Intracellular Signaling Peptides and Proteins/analysis , Mice , Oncogene Proteins/analysis , Peroxiredoxins/analysis , Peroxiredoxins/metabolism , Protein Deglycase DJ-1 , Protein Structure, Tertiary , Proto-Oncogene Proteins c-raf/analysis
8.
Anal Biochem ; 452: 1-9, 2014 May 01.
Article in English | MEDLINE | ID: mdl-24503441

ABSTRACT

The spliceosome is a highly dynamic macromolecular ribonucleoprotein (RNP) machine that catalyzes pre-mRNA splicing by assembling U1, U2, U4, U5, and U6 small nuclear RNPs (snRNPs). To process large numbers of introns with a limited number of snRNPs, synthesis and recycling of snRNPs must be maintained within an appropriate range to avoid their shortage. However, the mechanism that maintains cellular snRNP levels is unknown. Molecules that modulate cellular snRNP levels may help to define this mechanism but are not available. Therefore, the goal of the current study was to develop a reporter for snRNP levels using split luciferase based on proteomic analysis of snRNPs. We constructed an expression library of a luciferase fragment fused to core components of U5 snRNP and used it to isolate pre-mRNA processing factor 6 (PRPF6) and small nuclear ribonucleoprotein 40 kDa (U5-40K) that specifically reconstitute luciferase activity in the U5 snRNP complex. Here we show that this reporter detects the effects of small molecules on the levels of the U5 snRNP reporter protein complex. Our approach provides an alternative assay to discover small molecules targeting a macromolecular complex when the structure of the complex is not precisely identified.


Subject(s)
Luciferases/genetics , Proteomics , Ribonucleoprotein, U5 Small Nuclear/metabolism , Animals , Base Sequence , Genes, Reporter/genetics , HEK293 Cells , Humans , Mice , RNA Splicing Factors , RNA-Binding Proteins/metabolism , Ribonucleoprotein, U5 Small Nuclear/genetics , Transcription Factors/metabolism
9.
Brain Res ; 1542: 186-94, 2014 Jan 13.
Article in English | MEDLINE | ID: mdl-24511594

ABSTRACT

Protein aggregation is observed in various neurodegeneration diseases, including Parkinson's disease (PD). Alpha-synuclein, a causative gene product of familial PD, is a major component of large aggregates (inclusion bodies) in PD. Prefoldin, a molecular chaperone comprised of six subunits, PFD1~6, prevents misfolding of newly synthesized nascent polypeptides and also prevents aggregation of protein such as a pathogenic form of Huntingtin, a causative gene product of Huntington disease. In this study, we first found that aggregation of TagRFP-tagged wild-type α-synuclein and its pathogenic mutants, but not that of GFP-tagged α-synuclein, occurred in transfected Neuro-2a cells. The fluorescence of GFP is weakened under the condition of pH 4.5-5.0, and TagRFP is a stable red fluorescence protein under an acidic condition. Aggregated TagRFP-wild-type α-synuclein and its pathogenic mutants in Neuro-2a cells were ubiquitinated and were colocalized with the prefoldin complex in the lysosome under this condition. Furthermore, knockdown of PFD2 and PFD5 disrupted prefoldin formation in α-synuclein-expressing cells, resulting in accumulation of aggregates of wild-type and pathogenic α-synuclein and in induction of cell death. The levels of aggregation and cell death in pathogenic α-synuclein-transfected cells tended to be higher than those in wild-type α-synuclein-transfected cells. These results suggest that prefoldin works as a protective factor in aggregated α-synuclein-induced cell death.


Subject(s)
Molecular Chaperones/metabolism , alpha-Synuclein/metabolism , Cell Death/drug effects , Cell Death/genetics , Cell Line, Tumor , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Humans , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Molecular Chaperones/genetics , Mutation/genetics , Neuroblastoma/pathology , RNA, Small Interfering/pharmacology , Transfection , Ubiquitin/metabolism , alpha-Synuclein/genetics , Red Fluorescent Protein
10.
J Biol Chem ; 288(39): 27764-76, 2013 Sep 27.
Article in English | MEDLINE | ID: mdl-23946485

ABSTRACT

Prefoldin is a molecular chaperone composed of six subunits, PFD1-6, and prevents misfolding of newly synthesized nascent polypeptides. Although it is predicted that prefoldin, like other chaperones, modulates protein aggregation, the precise function of prefoldin against protein aggregation under physiological conditions has never been elucidated. In this study, we first established an anti-prefoldin monoclonal antibody that recognizes the prefoldin complex but not its subunits. Using this antibody, it was found that prefoldin was localized in the cytoplasm with dots in co-localization with polyubiquitinated proteins and that the number and strength of dots were increased in cells that had been treated with lactacystin, a proteasome inhibitor, and thapsigargin, an inducer of endoplasmic reticulum stress. Knockdown of prefoldin increased the level of SDS-insoluble ubiquitinated protein and reduced cell viability in lactacystin and thapsigargin-treated cells. Opposite results were obtained in prefoldin-overexpressed cells. It has been reported that mice harboring a missense mutation L110R of MM-1α/PFD5 exhibit neurodegeneration in the cerebellum. Although the prefoldin complex containing L110R MM-1α was properly formed in vitro and in cells derived from L110R MM-1α mice, the levels of ubiquitinated proteins and cytotoxicity were higher in L110R MM-1α cells than in wild-type cells under normal conditions and were increased by lactacystin and thapsigargin treatment, and growth of L110R MM-1α cells was attenuated. Furthermore, the polyubiquitinated protein aggregation level was increased in the brains of L110R MM-1α mice. These results suggest that prefoldin plays a role in quality control against protein aggregation and that dysfunction of prefoldin is one of the causes of neurodegenerative diseases.


Subject(s)
Molecular Chaperones/metabolism , Proteasome Inhibitors/metabolism , Ubiquitinated Proteins/metabolism , Acetylcysteine/analogs & derivatives , Acetylcysteine/chemistry , Animals , Antibodies, Monoclonal/chemistry , Brain/metabolism , Cell Death , Cell Line, Tumor , Cell Survival , Endoplasmic Reticulum/metabolism , HeLa Cells , Humans , Male , Mice , Mutation, Missense , Neurodegenerative Diseases/metabolism , Proteasome Endopeptidase Complex/chemistry , Protein Binding , Protein Denaturation , Protein Structure, Tertiary , Thapsigargin/chemistry
11.
Oxid Med Cell Longev ; 2013: 683920, 2013.
Article in English | MEDLINE | ID: mdl-23766857

ABSTRACT

Parkinson's disease (PD) is caused by dopaminergic neuronal death in the substantia nigra, resulting in a reduced level of dopamine in the striatum. Oxidative stress and mitochondrial dysfunction are thought to be major causes of neurodegeneration in PD. Although genetic and environmental factors are thought to affect the onset of PD, precise mechanisms at the molecular level have not been elucidated. The DJ-1 gene is a causative gene for familial PD (park7) and also an oncogene. DJ-1 has various functions, including transcriptional regulation, antioxidative stress reaction, and chaperone, protease, and mitochondrial regulation, and its activity is regulated by its oxidative status, especially that of cysteine 106 (C106) of DJ-1. Excess oxidation of DJ-1, which renders DJ-1 inactive, has been observed in patients with sporadic PD and Alzheimer's disease, suggesting that DJ-1 also participates in the onset and pathogenesis of sporadic PD as well as familial PD. DJ-1 is also a stress sensor and its expression is increased upon various stresses, including oxidative stress. In this review, we describe functions of DJ-1 against oxidative stress and possible roles of DJ-1 in the pathogenesis of PD.


Subject(s)
Neuroprotective Agents/metabolism , Oncogene Proteins/metabolism , Parkinson Disease/metabolism , Animals , Dopamine/biosynthesis , Humans , Mitochondria/metabolism , Oncogene Proteins/chemistry , Oncogene Proteins/genetics , Oxidative Stress/genetics , Parkinson Disease/pathology
12.
PLoS One ; 8(1): e54087, 2013.
Article in English | MEDLINE | ID: mdl-23326576

ABSTRACT

DJ-1 is a novel oncogene and also a causative gene for familial Parkinson's disease (park7). DJ-1 has multiple functions that include transcriptional regulation, anti-oxidative reaction and chaperone and mitochondrial regulation. Mitochondrial dysfunction is observed in DJ-1-knockout mice and fry, and mitochondrial DJ-1 is more protective against oxidative stress-induced cell death. Although translocation of DJ-1 into mitochondria is enhanced by oxidative stress that leads to oxidation of cysteine 106 (C106) of DJ-1, the characteristics of mitochondrial DJ-1 and the mechanism by which DJ-1 is translocated into mitochondria are poorly understood. In this study, immunostaining, co-immunoprecipitation, cell fractionation and pull-down experiments showed that mutants of glutamine 18 (E18) DJ-1 are localized in mitochondria and do not make homodimers. Likewise, DJ-1 with mutations of two cysteines located in the dimer interface, C46S and C53A, and pathogenic mutants, M26I and L166P DJ-1, were found to be localized in mitochondria and not to make homodimers. Mutant DJ-1 harboring both E18A and C106S, in which C106 is not oxidized, was also localized in mitochondria, indicating that oxidation of C106 is important but not essential for mitochondrial localization of DJ-1. It should be noted that E18A DJ-1 was translocated from mitochondria to the cytoplasm when mitochondrial membrane potential was reduced by treatment of cells with CCCP, an uncoupler of the oxidative phosphorylation system in mitochondria. Furthermore, deletion or substitution of the N-terminal 12 amino acids in DJ-1 resulted in re-localization of E18A, M26I and L166P DJ-1 from mitochondria into the cytoplasm. These findings suggest that a monomer and the N-terminal 12 amino acids are necessary for mitochondrial localization of DJ-1 mutants and that conformation change induced by C106 oxidation or by E18 mutation leads to translocation of DJ-1 into mitochondria.


Subject(s)
Cysteine , Mitochondria/metabolism , Oncogene Proteins , Oxidative Stress , Parkinson Disease/metabolism , Amino Acid Substitution , Animals , Carbonyl Cyanide m-Chlorophenyl Hydrazone/pharmacology , Cysteine/chemistry , Cysteine/metabolism , Cytoplasm/metabolism , Cytoplasm/ultrastructure , Dimerization , Glutamine/chemistry , Glutamine/genetics , Humans , Membrane Potential, Mitochondrial/drug effects , Mice , Mitochondria/chemistry , Mitochondria/ultrastructure , Mutation , Oncogene Proteins/chemistry , Oncogene Proteins/genetics , Oncogene Proteins/metabolism , Parkinson Disease/genetics , Parkinson Disease/physiopathology , Peroxiredoxins , Protein Deglycase DJ-1
13.
Mol Cell Biol ; 33(2): 340-59, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23149933

ABSTRACT

DJ-1 is an oncogene and the causative gene for familial Parkinson's disease. Although the oxidative status of DJ-1 at cysteine 106 (C106) is thought to affect all of the activities of DJ-1 and excess oxidation leads to the onset of various diseases, the precise molecular mechanisms underlying the effects of oxidation of DJ-1 on protein-protein interactions of DJ-1 remain unclear. In this study, we found that DJ-1 bound to the DNA-binding region of p53 in a manner dependent on the oxidation of C106. Of the p53 target genes, the expression level and promoter activity of the DUSP1 gene, but not those of the p21 gene, were increased in H(2)O(2)-treated DJ-1(-/-) cells and were decreased in wild-type DJ-1- but not C106S DJ-1-transfected H1299 cells through sequestration of p53 from the DUSP1 promoter by DJ-1. DUSP1 downregulated by oxidized DJ-1 activated extracellular signal-regulated kinase (ERK) and decreased apoptosis. The DUSP1 and p21 promoters harbor nonconsensus and consensus p53 recognition sequences, respectively, which have low affinity and high affinity for p53. However, DJ-1 inhibited p21 promoter activity exhibited by p53 mutants harboring low DNA-binding affinity but not by wild-type p53. These results indicate that DJ-1 inhibits the expression of p53 target genes and depend on p53 DNA-binding affinity and oxidation of DJ-1 C106.


Subject(s)
Intracellular Signaling Peptides and Proteins/metabolism , Oncogene Proteins/metabolism , Oxidative Stress , Promoter Regions, Genetic , Tumor Suppressor Protein p53/metabolism , Animals , Apoptosis/genetics , Blotting, Western , Cell Line, Tumor , Cysteine/genetics , Cysteine/metabolism , Down-Regulation , Dual Specificity Phosphatase 1/genetics , Dual Specificity Phosphatase 1/metabolism , Extracellular Signal-Regulated MAP Kinases/genetics , Extracellular Signal-Regulated MAP Kinases/metabolism , HEK293 Cells , Humans , Hydrogen Peroxide , Immunoprecipitation , Intracellular Signaling Peptides and Proteins/genetics , Mice , Oligonucleotide Array Sequence Analysis/methods , Oncogene Proteins/genetics , Oxidation-Reduction , Parkinson Disease/genetics , Parkinson Disease/physiopathology , Protein Deglycase DJ-1 , Real-Time Polymerase Chain Reaction , Tumor Suppressor Protein p53/genetics
14.
Mol Neurodegener ; 6(1): 48, 2011 Jul 08.
Article in English | MEDLINE | ID: mdl-21740546

ABSTRACT

BACKGROUND: Parkinson's disease (PD) and cerebral ischemia are chronic and acute neurodegenerative diseases, respectively, and onsets of these diseases are thought to be induced at least by oxidative stress. PD is caused by decreased dopamine levels in the substantia nigra and striatum, and cerebral ischemia occurs as a result of local reduction or arrest of blood supply. Although a precursor of dopamine and inhibitors of dopamine degradation have been used for PD therapy and an anti-oxidant have been used for cerebral ischemia therapy, cell death progresses during treatment. Reagents that prevent oxidative stress-induced cell death are therefore necessary for fundamental therapies for PD and cerebral ischemia. DJ-1, a causative gene product of a familial form of PD, PARK7, plays roles in transcriptional regulation and anti-oxidative stress, and loss of its function is thought to result in the onset of PD. Superfluous oxidation of cysteine at amino acid 106 (C106) of DJ-1 renders DJ-1 inactive, and such oxidized DJ-1 has been observed in patients with the sporadic form of PD. RESULTS: In this study, a compound, comp-23, that binds to DJ-1 was isolated by virtual screening. Comp-23 prevented oxidative stress-induced death of SH-SY5Y cells and primary neuronal cells of the ventral mesencephalon but not that of DJ-1-knockdown SH-SY5Y cells, indicating that the effect of the compound is specific to DJ-1. Comp-23 inhibited the production of reactive oxygen species (ROS) induced by oxidative stress and prevented excess oxidation of DJ-1. Furthermore, comp-23 prevented dopaminergic cell death in the substantia nigra and restored movement abnormality in 6-hydroxyldopamine-injected and rotenone-treated PD model rats and mice. Comp-23 also reduced infarct size of cerebral ischemia in rats that had been induced by middle cerebral artery occlusion. Protective activity of comp-23 seemed to be stronger than that of previously identified compound B. CONCLUSIONS: The results indicate that comp-23 exerts a neuroprotective effect by reducing ROS-mediated neuronal injury, suggesting that comp-23 becomes a lead compound for PD and ischemic neurodegeneration therapies.

15.
J Biol Chem ; 286(22): 19191-203, 2011 Jun 03.
Article in English | MEDLINE | ID: mdl-21478150

ABSTRACT

The molecular chaperone prefoldin (PFD) is a complex comprised of six different subunits, PFD1-PFD6, and delivers newly synthesized unfolded proteins to cytosolic chaperonin TRiC/CCT to facilitate the folding of proteins. PFD subunits also have functions different from the function of the PFD complex. We previously identified MM-1α/PFD5 as a novel c-Myc-binding protein and found that MM-1α suppresses transformation activity of c-Myc. However, it remains unclear how cells regulate protein levels of individual subunits and what mechanisms alter the ratio of their activities between subunits and their complex. In this study, we found that knockdown of one subunit decreased protein levels of other subunits and that transfection of five subunits other than MM-1α into cells increased the level of endogenous MM-1α. We also found that treatment of cells with MG132, a proteasome inhibitor, increased the level of transfected/overexpressed MM-1α but not that of endogenous MM-1α, indicating that overexpressed MM-1α, but not endogenous MM-1α, was degraded by the ubiquitin proteasome system (UPS). Experiments using other PFD subunits showed that the UPS degraded a monomer of PFD subunits, though extents of degradation varied among subunits. Furthermore, the level of one subunit was increased after co-transfection with the respective subunit, indicating that there are specific combinations between subunits to be stabilized. These results suggest mutual regulation of protein levels among PFD subunits and show how individual subunits form the PFD complex without degradation.


Subject(s)
Carrier Proteins/metabolism , Multiprotein Complexes/metabolism , Proteasome Endopeptidase Complex/metabolism , Protein Folding , Repressor Proteins/metabolism , Animals , Carrier Proteins/genetics , Cysteine Proteinase Inhibitors/pharmacology , HEK293 Cells , HeLa Cells , Hep G2 Cells , Humans , Leupeptins/pharmacology , Mice , Multiprotein Complexes/genetics , Proteasome Endopeptidase Complex/genetics , Proteasome Inhibitors , Proto-Oncogene Proteins c-myc/genetics , Proto-Oncogene Proteins c-myc/metabolism , Repressor Proteins/genetics , Ubiquitin/genetics , Ubiquitin/metabolism
16.
J Pharmacol Sci ; 115(1): 36-44, 2011.
Article in English | MEDLINE | ID: mdl-21160133

ABSTRACT

DJ-1 was identified as a causal gene for a familial form of early onset Parkinson's disease (PD), park 7. DJ-1 plays roles in transcriptional regulation and the anti-oxidative stress reaction. In this study, we found that protocatechuic aldehyde (PAL), a traditional Chinese medicine compound, bound to DJ-1 in vitro and that PAL protected SH-SY5Y cells but not DJ-1-knockdown SH-SY5Y cells from oxidative stress-induced cell death, indicating that the protective effect of PAL is mediated by DJ-1. Furthermore, PAL inhibited production of reactive oxygen species and the inhibition was abated in DJ-1-knockdown cells. PAL increased and decreased phosphorylation of AKT and PTEN, respectively, in SH-SY5Y cells, suggesting that the AKT pathway is one of the specific signaling pathways in PAL-induced neuroprotection. Moreover, PAL prevented superfluous oxidation of cysteine 106 of DJ-1, an essential amino acid for DJ-1's function. The present study demonstrates that PAL has potential neuroprotective effects through DJ-1.


Subject(s)
Benzaldehydes/pharmacology , Catechols/pharmacology , Intracellular Signaling Peptides and Proteins/physiology , Neuroblastoma/pathology , Neuroprotective Agents , Oncogene Proteins/physiology , Oxidative Stress/drug effects , Agammaglobulinaemia Tyrosine Kinase , Benzaldehydes/metabolism , Catechols/metabolism , Cell Death/drug effects , Humans , Intracellular Signaling Peptides and Proteins/metabolism , Oncogene Proteins/metabolism , PTEN Phosphohydrolase/metabolism , Parkinson Disease/genetics , Phosphorylation , Protein Binding , Protein Deglycase DJ-1 , Protein-Tyrosine Kinases/metabolism , Protein-Tyrosine Kinases/physiology , Signal Transduction , Tumor Cells, Cultured
17.
Proc Natl Acad Sci U S A ; 107(22): 10020-5, 2010 Jun 01.
Article in English | MEDLINE | ID: mdl-20463285

ABSTRACT

To promote fidelity in nuclear pre-mRNA splicing, the spliceosome rejects and discards suboptimal substrates that have engaged the spliceosome. Whereas DExD/H box ATPases have been implicated in rejecting suboptimal substrates, the mechanism for discarding suboptimal substrates has remained obscure. Corroborating evidence that suboptimal, mutated lariat intermediates can be exported to the cytoplasm for turnover, we have found that the ribosome can translate mutated lariat intermediates. By glycerol gradient analysis, we have found that the spliceosome can dissociate mutated lariat intermediates in vivo in a manner that requires the DEAH box ATPase Prp43p. Through an in vitro assay, we demonstrate that Prp43p promotes the discard of suboptimal and optimal 5' exon and lariat intermediates indiscriminately. Finally, we demonstrate a requirement for Prp43p in repressing splicing at a cryptic splice site. We propose a model for the fidelity of exon ligation in which the DEAH box ATPase Prp22p slows the flow of suboptimal intermediates through exon ligation and Prp43p generally promotes discard of intermediates, thereby establishing a pathway for turnover of stalled intermediates. Because Prp43p also promotes spliceosome disassembly after exon ligation, this work establishes a parallel between the discard of suboptimal intermediates and the dissociation of a genuine excised intron product.


Subject(s)
Adenosine Triphosphatases/metabolism , DEAD-box RNA Helicases/metabolism , Saccharomyces cerevisiae Proteins/metabolism , Spliceosomes/metabolism , Adenosine Triphosphatases/genetics , Base Sequence , Cytoplasm/metabolism , DEAD-box RNA Helicases/genetics , Exons , Introns , Models, Biological , Mutation , RNA Precursors/genetics , RNA Precursors/metabolism , RNA Splice Sites , RNA Splicing , RNA, Fungal/genetics , RNA, Fungal/metabolism , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Saccharomyces cerevisiae Proteins/genetics
18.
Biochem Biophys Res Commun ; 390(3): 667-72, 2009 Dec 18.
Article in English | MEDLINE | ID: mdl-19822128

ABSTRACT

Parkinson's disease (PD) is caused by neuronal cell death, and oxidative stress and mitochondrial dysfunction are thought to be responsible for onset of PD. DJ-1, a causative gene product of a familial form of Parkinson's disease, PARK7, plays roles in transcriptional regulation and anti-oxidative stress. The possible mitochondrial function of DJ-1 has been proposed, but its exact function remains unclear. In this study, we found that DJ-1 directly bound to NDUFA4 and ND1, nuclear and mitochondrial DNA-encoding subunits of mitochondrial complex I, respectively, and was colocalized with complex I and that complex I activity was reduced in DJ-1-knockdown NIH3T3 and HEK293 cells. These findings suggest that DJ-1 is an integral mitochondrial protein and that DJ-1 plays a role in maintenance of mitochondrial complex I activity.


Subject(s)
Electron Transport Complex IV/metabolism , Electron Transport Complex I/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Oncogene Proteins/metabolism , Parkinson Disease/enzymology , Animals , Electron Transport Complex IV/genetics , Gene Knockdown Techniques , Humans , Intracellular Signaling Peptides and Proteins/genetics , Mice , Oncogene Proteins/genetics , Protein Binding , Protein Deglycase DJ-1
19.
Biol Pharm Bull ; 32(10): 1795-9, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19801846

ABSTRACT

Extracellular matrix glycoprotein tenascin-X (TNX) is the largest member of the tenascin family. In this study, we investigated the adhesive properties of TNX and the signaling pathway to be induced to mouse fibroblast L cells on TNX substrate. Approximately 45% of evaluable cells used in the cell adhesion assay were attached to purified TNX but did not spread and were rounded on TNX. The remaining 55% of cells were detached from the TNX substrate and were floating in the conditioned medium. In rounded cells on TNX, phosphorylation of focal adhesion kinase (FAK) was diminished compared with that in cells on control phosphate buffered saline (PBS). To better understand the pathways that lead to the detachment of cells on the TNX substrate, we examined phosphorylation of p38 mitogen-activated protein (MAP) kinase. Phosphorylation of p38 MAP kinase was observed in the rounded cells on TNX in a dose-dependent manner, and the maximum effect was observed at 30 min on TNX. Inhibition of p38 MAP kinase alpha expression by RNA interference partially suppressed the TNX-induced cell detachment. These results suggest that the p38 MAP kinase is a major mediator of TNX-induced cell detachment.


Subject(s)
Cell Adhesion/physiology , Fibroblasts/metabolism , Tenascin/metabolism , p38 Mitogen-Activated Protein Kinases/metabolism , Animals , Cells, Cultured , Extracellular Matrix Proteins/metabolism , Focal Adhesion Protein-Tyrosine Kinases/metabolism , Mice , Phosphorylation , Signal Transduction
20.
J Biol Chem ; 284(42): 28832-44, 2009 Oct 16.
Article in English | MEDLINE | ID: mdl-19703902

ABSTRACT

Parkinson disease (PD) is caused by loss of dopamine, which is synthesized from tyrosine by two enzymes, tyrosine hydroxylase (TH) and 4-dihydroxy-L-phenylalanine decarboxylase (DDC). DJ-1 is a causative gene for the familial form of PD, but little is known about the roles of DJ-1 in dopamine synthesis. In this study, we found that DJ-1 directly bound to TH and DDC and positively regulated their activities in human dopaminergic cells. Mutants of DJ-1 found in PD patients, including heterozygous mutants, lost their activity and worked as dominant-negative forms toward wild-type DJ-1. When cells were treated with H(2)O(2), 6-hydroxydopamine, or 1-methyl-4-phenylpyridinium, changes in activities of TH and DDC accompanied by oxidation of cysteine 106 of DJ-1 occurred. It was found that DJ-1 possessing Cys-106 with SH and SOH forms was active and that DJ-1 possessing Cys-106 with SO(2)H and SO(3)H forms was inactive in terms of stimulation of TH and DDC activities. These findings indicate an essential role of DJ-1 in dopamine synthesis and contribution of DJ-1 to the sporadic form of PD.


Subject(s)
Dopa Decarboxylase/metabolism , Gene Expression Regulation, Enzymologic , Intracellular Signaling Peptides and Proteins/metabolism , Oncogene Proteins/metabolism , Tyrosine 3-Monooxygenase/metabolism , Cell Line, Tumor , Dose-Response Relationship, Drug , Fluorescent Antibody Technique, Indirect , Humans , Mutation , Oxidative Stress , Oxygen/chemistry , Parkinson Disease/enzymology , Protein Deglycase DJ-1 , Reverse Transcriptase Polymerase Chain Reaction , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Time Factors
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