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1.
Appl Environ Microbiol ; 89(12): e0165123, 2023 12 21.
Article in English | MEDLINE | ID: mdl-38054734

ABSTRACT

IMPORTANCE: Cellulose diacetate (CDA) is a promising alternative to conventional plastics due to its versatility in manufacturing and low environmental persistence. Previously, our group demonstrated that CDA is susceptible to biodegradation in the ocean on timescales of months. In this study, we report the composition of microorganisms driving CDA degradation in the coastal ocean. We found that the coastal ocean harbors distinct bacterial taxa implicated in CDA degradation and these taxa have not been previously identified in prior CDA degradation studies, indicating an unexplored diversity of CDA-degrading bacteria in the ocean. Moreover, the shape of the plastic article (e.g., a fabric, film, or foam) and plasticizer in the plastic matrix selected for different microbial communities. Our findings pave the way for future studies to identify the specific species and enzymes that drive CDA degradation in the marine environment, ultimately yielding a more predictive understanding of CDA biodegradation across space and time.


Subject(s)
Microbiota , Plastics , Biopolymers , Bacteria/genetics , Biodegradation, Environmental , Oceans and Seas
2.
PLoS One ; 11(6): e0157784, 2016.
Article in English | MEDLINE | ID: mdl-27327897

ABSTRACT

XPC-RAD23B (XPC) plays a critical role in human nucleotide excision repair (hNER) as this complex recognizes DNA adducts to initiate NER. To determine the mutagenic potential of structurally different bulky DNA damages, various studies have been conducted to define the correlation of XPC-DNA damage equilibrium binding affinity with NER efficiency. However, little is known about the effects of XPC-DNA damage recognition kinetics on hNER. Although association of XPC is important, our current work shows that the XPC-DNA dissociation rate also plays a pivotal role in achieving NER efficiency. We characterized for the first time the binding of XPC to mono- versus di-AAF-modified sequences by using the real time monitoring surface plasmon resonance technique. Strikingly, the half-life (t1/2 or the retention time of XPC in association with damaged DNA) shares an inverse relationship with NER efficiency. This is particularly true when XPC remained bound to clustered adducts for a much longer period of time as compared to mono-adducts. Our results suggest that XPC dissociation from the damage site could become a rate-limiting step in NER of certain types of DNA adducts, leading to repression of NER.


Subject(s)
DNA Damage , DNA Repair Enzymes/metabolism , DNA Repair , DNA-Binding Proteins/metabolism , Adenosine Triphosphatases/metabolism , Base Sequence , DNA/metabolism , DNA Adducts/metabolism , Escherichia coli/metabolism , Escherichia coli Proteins/metabolism , Half-Life , HeLa Cells , Humans , Models, Biological , Nucleic Acid Denaturation , Protein Binding , Substrate Specificity , Thermodynamics
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