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1.
Int J Cardiol Heart Vasc ; 50: 101322, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38204985

ABSTRACT

Background: Health literacy is a key enabler of effective behavioural modification in chronic diseases. While patient reported outcome measures (PROMs) exists for patient with atrial fibrillation (AF), none address risk factors comprehensively. The aim of the study was to develop and qualitatively validate a disease specific PROM that incorporates knowledge on risk factors and assesses interactive and critical health literacy of people living with AF. Methods: The 47-item Atrial Fibrillation Health Literacy Questionnaire (AFHLQ) was developed and validated through a qualitative research design. Expert and Consumer focus groups, each consisting of seven participants provided opinion. Results: The 47-item questionnaire consists of 5 domains: (1) what is AF, (2) what are the symptoms of AF, (3) why do people get AF, (4) management of AF, and (5) what measures can slow or prevent the progression of AF. Recommendations resulted in several changes to the original 47 item list during the qualitative validation process: 13 original items were removed, and 13 new items were added. The response categories were also simplified from a Likert scale to "yes", "no" or "don't know". Conclusion: A 47-item AFHLQ instrument was developed and validated with modifications made through clinical expert and consumer opinion. This tool has a potential to be used to evaluate and guide interventions at a clinical and population level to understand and improve AF health literacy and outcomes.

2.
SSM Popul Health ; 17: 101070, 2022 Mar.
Article in English | MEDLINE | ID: mdl-35313606

ABSTRACT

Exposure to social risk in early life negatively impacts the health and wellbeing of children. While screening for social determinants of health is recommended, there is little evidence that identifying social risk early in life predicts longer-term poorer outcomes. The purpose of this study is to examine the extent to which assessing social risk using a standardized tool in young children up to age 6 years might predict poor health and academic performance at 10-11 years old. The social risk domains studied were housing instability, food insecurity, financial strain, transport problems, safety, lack of support and unemployment. The predictive validity of these social risk domains measured at 0-5 years was examined using data from the Longitudinal Study of Australian Children. Outcomes at 10-11 years included ongoing diseases and mental health conditions, hospitalization, injury, dental problems, overweight or obesity and academic achievement. Financial strain and inability to access support were the most sensitive measures of poor outcomes. Across all social risks, the positive predictive value was highest for academic outcomes. Across all domains, there was higher sensitivity for children with 2 or more social risks. Items in the social risk screening tool were moderate predictors of academic outcomes, but weak predictors of health outcomes at 10-11 years. This data will be useful for informing screening for social determinants of health.

3.
Health Promot J Austr ; 33(3): 751-757, 2022 Jul.
Article in English | MEDLINE | ID: mdl-34510601

ABSTRACT

ISSUE ADDRESSED: We sought to examine barriers to access to, use of, and benefits from digital health services in an area of socioeconomic disadvantage of Adelaide, Australia. METHODS: We conducted waiting room surveys in two hospital diabetes clinics and one hospital antenatal clinic in South Australia, and follow-up telephone interviews with 20 patients. We examined the extent of access to, use of and benefits from digital health services, and what barriers people encountered. We undertook mixed methods, with quantitative descriptive analysis and qualitative analysis. RESULTS: Thirty-seven diabetes clinic patients (54% response rate) and 99 antenatal clinic patients (33% response rate) participated. Sixty-two percent of the patients with diabetes and 27% of antenatal clinic patients had never used digital health services. Seventeen percent of patients with diabetes and 30% of antenatal clinic patients were hesitant users, and 22% of patients with diabetes and 44% of antenatal clinic patients were confident users. Barriers included struggling to afford the technology or to stay connected and a lack of trust in online health information. Potential benefits included feeling more empowered and complementing face-to-face care. CONCLUSIONS: There are socioeconomic barriers to access, use of, and ability to benefit from digital health strategies that mean not everyone will be able to benefit from digital health services. SO WHAT?: As COVID-19 accelerates the shift towards digital health services, people experiencing socioeconomic disadvantage may be excluded. If barriers to access and use are not addressed, they will exacerbate already increasing health inequities.


Subject(s)
COVID-19 , Diabetes Mellitus , Female , Health Services , Hospitals , Humans , Pregnancy , Socioeconomic Factors
4.
Public Health Res Pract ; 31(2)2021 Jun 09.
Article in English | MEDLINE | ID: mdl-34104935

ABSTRACT

Objective and importance of study: Considerable evidence suggests that adverse social determinants of health (SDH), such as poor education, unemployment, food and housing insecurity, interpersonal violence, inadequate social support and poverty, are key determinants of health and wellbeing. This prospective cohort study piloted a screening tool to collect individual SDH data in a South Australian hospital inpatient population. We explored participants' attitudes to SDH screening in brief follow-up interviews. METHODS: This mixed-methods study used an SDH screening tool to collect individual-level SDH data from inpatients living in a highly disadvantaged socio-economic area. Participants had a primary diagnosis of chronic obstructive pulmonary disease (COPD), heart failure (HF) or diabetes mellitus. Follow-up interviews were completed post discharge via telephone. Descriptive statistics were employed to examine the prevalence and type of adverse SDH reported by the sample. Thematic analysis was applied to explore participants' attitudes to the screening. RESULTS: The sample population (N = 37) reported a substantial burden of a range of adverse SDH (mean 4.7 adverse SDH experienced per participant, standard deviation 2.8). Participants involved in follow-up interviews (n = 8) believed screening might enhance communication between healthcare providers and patients and assist in identifying underlying social problems. CONCLUSION: A screening tool for SDH was successfully used to collect individual-level data in a hospital setting. An array of adverse SDH was common in the sample population. Participants believed screening for SDH may potentially benefit doctors and patients. A larger study is required to more robustly characterise the adverse SDH affecting individuals in this population and to explore how the healthcare system might effectively intervene.


Subject(s)
Diabetes Mellitus/epidemiology , Heart Failure/epidemiology , Inpatients/statistics & numerical data , Pulmonary Disease, Chronic Obstructive/epidemiology , Social Determinants of Health/statistics & numerical data , Aged , Attitude to Health , Australia/epidemiology , Educational Status , Female , Housing/statistics & numerical data , Humans , Inpatients/psychology , Male , Middle Aged , Pilot Projects , Poverty/statistics & numerical data , Prospective Studies , Surveys and Questionnaires , Unemployment/statistics & numerical data , Violence/statistics & numerical data
5.
Eur J Hum Genet ; 22(1): 40-5, 2014 Jan.
Article in English | MEDLINE | ID: mdl-23695280

ABSTRACT

Recent studies have established the role of rare copy number variants (CNVs) in several neurological disorders but the contribution of rare CNVs to cerebral palsy (CP) is not known. Fifty Caucasian families having children with CP were studied using two microarray designs. Potentially pathogenic, rare (<1% population frequency) CNVs were identified, and their frequency determined, by comparing the CNVs found in cases with 8329 adult controls with no known neurological disorders. Ten of the 50 cases (20%) had rare CNVs of potential relevance to CP; there were a total of 14 CNVs, which were observed in <0.1% (<8/8329) of the control population. Eight inherited from an unaffected mother: a 751-kb deletion including FSCB, a 1.5-Mb duplication of 7q21.13, a 534-kb duplication of 15q11.2, a 446-kb duplication including CTNND2, a 219-kb duplication including MCPH1, a 169-kb duplication of 22q13.33, a 64-kb duplication of MC2R, and a 135-bp exonic deletion of SLC06A1. Three inherited from an unaffected father: a 386-kb deletion of 12p12.2-p12.1, a 234-kb duplication of 10q26.13, and a 4-kb exonic deletion of COPS3. The inheritance was unknown for three CNVs: a 157-bp exonic deletion of ACOX1, a 693-kb duplication of 17q25.3, and a 265-kb duplication of DAAM1. This is the first systematic study of CNVs in CP, and although it did not identify de novo mutations, has shown inherited, rare CNVs involving potentially pathogenic genes and pathways requiring further investigation.


Subject(s)
Cerebral Palsy/genetics , DNA Copy Number Variations/genetics , Microarray Analysis , Adaptor Proteins, Signal Transducing/genetics , Adult , COP9 Signalosome Complex , Catenins/genetics , Cell Cycle Proteins , Cerebral Palsy/etiology , Cerebral Palsy/pathology , Cytoskeletal Proteins , Exons , Female , Gene Frequency , Humans , Infant , Infant, Newborn , Male , Microfilament Proteins , Nerve Tissue Proteins/genetics , Proto-Oncogene Proteins/genetics , Sequence Deletion , rho GTP-Binding Proteins , Delta Catenin
6.
Eur J Med Genet ; 56(9): 506-9, 2013 Sep.
Article in English | MEDLINE | ID: mdl-23911641

ABSTRACT

Benign hereditary chorea caused by mutations in the NK2 homeobox 1 gene (NKX2-1), shares clinical features with ataxic and dyskinetic cerebral palsy (CP), resulting in the possibility of misdiagnosis. A father and his two children were considered to have ataxic CP until a possible diagnosis of benign familial chorea was made in the children in early teenage. The father's neurological condition had not been appreciated prior to examination of the affected son. Whole exome sequencing of blood derived DNA and bioinformatics analysis were performed. A 7 bp deletion in exon 1 of NKX2-1, resulting in a frame shift and creation of a premature termination codon, was identified in all affected individuals. Screening of 60 unrelated individuals with a diagnosis of dyskinetic or ataxic CP did not identify NKX2-1 mutations. BHC can be confused with ataxic and dyskinetic CP. Occasionally these children have a mutation in NKX2-1.


Subject(s)
Ataxia/genetics , Cerebral Palsy/genetics , Genetic Diseases, Inborn/genetics , Mutation , Nuclear Proteins/genetics , Pedigree , Transcription Factors/genetics , Amino Acid Sequence , Ataxia/diagnosis , Cerebral Palsy/diagnosis , Exome , Female , Genetic Diseases, Inborn/diagnosis , Humans , Infant, Newborn , Male , Middle Aged , Molecular Sequence Data , Thyroid Nuclear Factor 1
7.
Pediatr Res ; 74(4): 433-8, 2013 Oct.
Article in English | MEDLINE | ID: mdl-23835654

ABSTRACT

BACKGROUND: The aim of this study was to replicate single-nucleotide polymorphism (SNP) associations with preterm birth (PTB; birth at <37 completed weeks of gestation) and synthesize currently available evidence using meta-analysis. METHODS: Spontaneous PTB cases and controls were selected from an existing cohort. Candidate SNPs were taken from an existing genotype panel. A systematic review was conducted for each SNP in the panel to determine suitability as a PTB candidate. Those with significant associations previously reported in Caucasians were selected for replication. Candidate SNPs were already genotyped in cases and controls and clinical data were accessed from state perinatal and cerebral palsy databases. Association analysis was conducted between each SNP and PTB, and meta-analysis was conducted if there were ≥ 3 studies in the literature. Maternal and fetal SNPs were considered as separate candidates. RESULTS: A cohort of 170 cases and 583 controls was formed. Eight SNPs from the original panel of genotyped SNPs were selected as PTB candidates and for replication on the basis of systematic literature review results. In our cohort, fetal factor V Leiden (FVL) was significantly associated with PTB (odds ratio (OR): 2.6, 95% confidence interval (CI): 1.31-5.17), and meta-analysis confirmed this association (OR: 2.71, 95% CI: 1.15-6.4). CONCLUSION: Replication and meta-analysis support an increased risk of PTB in Caucasians with the fetal FVL mutation.


Subject(s)
Polymorphism, Single Nucleotide/genetics , Premature Birth/genetics , White People/genetics , Case-Control Studies , Cohort Studies , Factor V/genetics , Fetus , Humans , Odds Ratio
8.
J Paediatr Child Health ; 49(7): 575-81, 2013 Jul.
Article in English | MEDLINE | ID: mdl-23773706

ABSTRACT

AIM: This study aims to examine single nucleotide polymorphism (SNP) associations with cerebral palsy in a multi-variable analysis adjusting for potential clinical confounders and to assess SNP-SNP and SNP-maternal infection interactions as contributors to cerebral palsy. METHODS: A case control study including 587 children with cerebral palsy and 1154 control children without cerebral palsy. Thirty-nine candidate SNPs were genotyped in both mother and child. Data linkage to perinatal notes and cerebral palsy registers was performed with a supplementary maternal pregnancy questionnaire. History of known maternal infection during pregnancy was extracted from perinatal databases. RESULTS: Both maternal and fetal carriage of inducible nitric oxide synthase SNP rs1137933 were significantly negatively associated with cerebral palsy in infants born at less than 32 weeks gestation after adjustment for potential clinical confounders and correction for multiple testing (odds ratio 0.55, 95% confidence interval 0.38-0.79; odds ratio 0.57, 95% confidence interval 0.4-0.82, respectively). Analysis did not show any statistically significant SNP-SNP or SNP-maternal infection interactions after correction for multiple testing. CONCLUSIONS: Maternal and child inducible nitric oxide synthase SNPs are associated with reduced risk of cerebral palsy in infants born very preterm. There was no evidence for statistically significant SNP-SNP or SNP-maternal infection interactions as modulators of cerebral palsy risk.


Subject(s)
Cerebral Palsy/genetics , Infant, Premature , Nitric Oxide Synthase Type II/genetics , Polymorphism, Single Nucleotide , Confounding Factors, Epidemiologic , Cytokines/genetics , Female , Genotyping Techniques , Gestational Age , Humans , Infant, Newborn , Male , Mannose-Binding Lectin/genetics , Matrix Metalloproteinase 2/genetics , Matrix Metalloproteinase 3/genetics , Mothers , Multivariate Analysis , Thrombophilia/genetics
9.
Am J Hum Genet ; 92(5): 681-95, 2013 May 02.
Article in English | MEDLINE | ID: mdl-23623388

ABSTRACT

Arthrogryposis multiplex congenita (AMC) is caused by heterogeneous pathologies leading to multiple antenatal joint contractures through fetal akinesia. Understanding the pathophysiology of this disorder is important for clinical care of the affected individuals and genetic counseling of the families. We thus aimed to establish the genetic basis of an AMC subtype that is associated with multiple dysmorphic features and intellectual disability (ID). We used haplotype analysis, next-generation sequencing, array comparative genomic hybridization, and chromosome breakpoint mapping to identify the pathogenic mutations in families and simplex cases. Suspected disease variants were verified by cosegregation analysis. We identified disease-causing mutations in the zinc-finger gene ZC4H2 in four families affected by X-linked AMC plus ID and one family affected by cerebral palsy. Several heterozygous females were also affected, but to a lesser degree. Furthermore, we found two ZC4H2 deletions and one rearrangement in two female and one male unrelated simplex cases, respectively. In mouse primary hippocampal neurons, transiently produced ZC4H2 localized to the postsynaptic compartment of excitatory synapses, and the altered protein influenced dendritic spine density. In zebrafish, antisense-morpholino-mediated zc4h2 knockdown caused abnormal swimming and impaired α-motoneuron development. All missense mutations identified herein failed to rescue the swimming defect of zebrafish morphants. We conclude that ZC4H2 point mutations, rearrangements, and small deletions cause a clinically variable broad-spectrum neurodevelopmental disorder of the central and peripheral nervous systems in both familial and simplex cases of both sexes. Our results highlight the importance of ZC4H2 for genetic testing of individuals presenting with ID plus muscle weakness and minor or major forms of AMC.


Subject(s)
Abnormalities, Multiple/genetics , Arthrogryposis/genetics , Carrier Proteins/genetics , Genetic Predisposition to Disease/genetics , Intellectual Disability/genetics , Neuronal Plasticity/genetics , Zinc Fingers/genetics , Abnormalities, Multiple/pathology , Animals , Arthrogryposis/pathology , Cells, Cultured , Chromosome Breakpoints , Comparative Genomic Hybridization , Female , Haplotypes/genetics , High-Throughput Nucleotide Sequencing , Humans , Immunoblotting , In Situ Hybridization , Intellectual Disability/pathology , Intracellular Signaling Peptides and Proteins , Male , Mice , Mutation/genetics , Nuclear Proteins , Pedigree , Synapses/genetics , Zebrafish
10.
J Matern Fetal Neonatal Med ; 25(10): 2078-81, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22372783

ABSTRACT

OBJECTIVE: Intrauterine infection is a risk factor for cerebral palsy. Previous work reported a high frequency of viral DNA in newborn screening cards from cerebral palsy cases and controls possibly due to contamination. METHODS: Retrospective case-control study using improved methodologies to minimize contamination during PCR-based detection of viral DNA sequences. Newborn screening cards of 339 Caucasian children with cerebral palsy and 594 controls were examined. Viruses tested were herpes simplex viruses 1 and 2 (HSV1 and 2), varicella zoster virus (VZV), Epstein-Barr virus (EBV), cytomegalovirus (CMV), human herpes viruses 6, 7 and 8 (HHV6, HHV7 and HHV8), and parvovirus B19. Genotyping was performed on DNA extracted from dried blood spots. RESULTS: CMV and EBV were detected in 5 (1.5%) and 3 (0.9%) of 339 cases, respectively, but not in controls (p = 0.047 and 0.006). Frequencies of detection of the other viruses examined were similar for cases and controls. DNA from at least one of the nine viruses tested was found in 4.4% of cases and 3.1% of controls [OR 1.4 95% CI (0.71-2.76)]. CONCLUSION: Evidence of congenital viral infection was uncommon in cases of cerebral palsy and controls. However, CMV and EBV were significantly associated with cerebral palsy.


Subject(s)
Cerebral Palsy/virology , Cytomegalovirus Infections/complications , Epstein-Barr Virus Infections/complications , Adolescent , Case-Control Studies , Child , Child, Preschool , Cytomegalovirus/genetics , Cytomegalovirus Infections/congenital , DNA, Viral/analysis , Dried Blood Spot Testing , Epstein-Barr Virus Infections/congenital , Herpesvirus 4, Human/genetics , Humans , Infant, Newborn , Neonatal Screening , Polymerase Chain Reaction , Retrospective Studies
11.
Pediatrics ; 129(2): e414-23, 2012 Feb.
Article in English | MEDLINE | ID: mdl-22291124

ABSTRACT

OBJECTIVE: Previous studies have suggested associations between certain genetic variants and susceptibility to cerebral palsy (CP). This study was designed to assess established and novel maternal and child genetic and epidemiologic risk factors for CP along with their interactions. METHODS: DNA from 587 case and 1154 control mother-child pairs was analyzed. A panel of 35 candidate single nucleotide polymorphisms (SNPs) were examined and included SNPs in genes associated with (1) thrombophilia, (2) inflammation, and (3) risk factors for CP (eg, preterm birth). Comparisons were specified a priori and made by using a χ(2) test. RESULTS: There were 40 fetal and 28 maternal associations with CP when analyzed by CP subtype, gestational age, genotypes of apolipoprotein E, and haplotypes of mannose-binding-lectin. After Bonferroni correction for multiple testing, no fetal or maternal candidate SNP was associated with CP or its subtypes. Only fetal carriage of prothrombin gene mutation remained marginally associated with hemiplegia in term infants born to mothers with a reported infection during pregnancy. Odds ratio directions of fetal SNP associations were compared with previously reported studies and confirmed no trend toward association. CONCLUSIONS: Except for the prothrombin gene mutation, individual maternal and fetal SNPs in our candidate panel were not found to be associated with CP outcome. Past reported SNP associations with CP were not confirmed, possibly reflecting type I error from small numbers and multiple testing in the original reports.


Subject(s)
Cerebral Palsy/genetics , Genetic Association Studies , Polymorphism, Single Nucleotide/genetics , Adolescent , Apolipoproteins E/genetics , Australia , Case-Control Studies , Cerebral Palsy/epidemiology , Child , Child, Preschool , Cohort Studies , DNA Mutational Analysis , Female , Genetic Carrier Screening , Genetic Predisposition to Disease/genetics , Haplotypes/genetics , Humans , Infant, Newborn , Mannose-Binding Lectin/genetics , Phenotype , Pregnancy , Prothrombin/genetics
12.
Obstet Gynecol ; 118(3): 576-582, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21860286

ABSTRACT

OBJECTIVE: To estimate epidemiologic risk factors for cerebral palsy. METHODS: Data were collected by linkage to state-based perinatal repositories and cerebral palsy registers and using a maternal questionnaire. The cohort included 587 individuals with cerebral palsy and 1,154 non-cerebral palsy controls. RESULTS: The following factors were associated with cerebral palsy: recorded maternal infection during pregnancy (41.4% patients compared with 31.3% controls; odds ratio [OR] 1.55, 95% confidence interval 1.26-1.91), small for gestational age ([birth weight less than third customized centile] 43.9% patients compared with 6.3% controls; OR 11.75, 6.25-22.08), gestational age less than 32 weeks (29.3% patients compared with 0.7% controls; OR 59.20, 28.87-121.38), multiple birth (OR 6.62, 4.00-10.95), a relative with cerebral palsy (OR 1.61, 1.12-2.32), breech position (13.7% patients compared with 6.0% controls; OR 2.48, 1.76-3.49), bleeding at any time in pregnancy (29.3% patients compared with 16.9% controls; OR 2.04, 1.61-2.58), male sex (58.8% patients compared with 45.8% controls; OR 1.68, 1.38-2.06), multiple miscarriage (7.7% patients compared with 3.5% controls; OR 2.30, 1.38-3.82), smoking (14.0% patients compared with 10.6% controls; OR 1.37, 1.02-1.85), and illicit drug use (3.3% patients compared with 1.5% controls; OR 2.22, 1.14-4.30). Factors not associated with cerebral palsy were "disappearing twin," diabetes, maternal body mass index, hypertension, alcohol consumption, anemia, maternal hypothyroidism, forceps or vacuum delivery, and maternal age. CONCLUSION: Preterm birth, intrauterine growth restriction, perinatal infection, and multiple birth present the largest risks for a cerebral palsy outcome. Reassuringly, upper respiratory tract and gastrointestinal infections during pregnancy were not associated with cerebral palsy. LEVEL OF EVIDENCE: II.


Subject(s)
Cerebral Palsy/epidemiology , Fetal Growth Retardation/epidemiology , Pregnancy Complications, Infectious/epidemiology , Pregnancy Outcome/epidemiology , Pregnancy, Multiple/statistics & numerical data , Premature Birth/epidemiology , Adult , Apgar Score , Australia/epidemiology , Breech Presentation/epidemiology , Female , Fetal Death/epidemiology , Humans , Infant, Newborn , Male , Pregnancy , Risk Factors , Sex Factors , Smoking/epidemiology , Twins
13.
J Biomol Tech ; 22(1): 5-9, 2011 Apr.
Article in English | MEDLINE | ID: mdl-21455476

ABSTRACT

Reliable detection of viral DNA in stored newborn screening cards (NSC) would give important insight into possible silent infection during pregnancy and around birth. We sought a DNA extraction method with sufficient sensitivity to detect low copy numbers of viral DNA from small punch samples of NSC. Blank NSC were spotted with seronegative EDTA-blood and seropositive EBV EDTA-blood. DNA was extracted with commercial and noncommercial DNA extraction methods and quantified on a spectrofluorometer using a PicoGreen dsDNA quantification kit. Serial dilutions of purified viral DNA controls determined the sensitivity of the amplification protocol, and seropositive EBV EDTA-blood amplified by nested PCR (nPCR) validated the DNA extraction methods. There were considerable differences between the commercial and noncommercial DNA extraction methods (P=0.014; P=0.016). Commercial kits compared favorably, but the QIamp DNA micro kit with an added forensic filter step was marginally more sensitive. The mean DNA yield from this method was 3 ng/µl. The limit of detection was 10 viral genome copies in a 50-µl reaction. EBV nPCR detection in neat and 1:10 diluted DNA extracts could be replicated reliably. We conclude that the QIamp Micro DNA extraction method with the added forensic spin-filter step was suitable for retrospective DNA viral assays from NSC.


Subject(s)
Cytomegalovirus/isolation & purification , DNA, Viral/blood , DNA, Viral/isolation & purification , Neonatal Screening/methods , Polymerase Chain Reaction/methods , Analysis of Variance , Analytic Sample Preparation Methods , Blood Specimen Collection/methods , Cytomegalovirus Infections/blood , Cytomegalovirus Infections/diagnosis , Female , Herpesvirus 4, Human/isolation & purification , Humans , Infant, Newborn , Pregnancy , Pregnancy Complications, Infectious/virology , Retrospective Studies , Sensitivity and Specificity , Viral Load
14.
J Paediatr Child Health ; 47(3): 99-110, 2011 Mar.
Article in English | MEDLINE | ID: mdl-21091581

ABSTRACT

AIM: Previous studies have proposed a link between the presence of specific single nucleotide polymorphisms (SNPs) and cerebral palsy and the majority of these associations remain to be confirmed or rejected by prospective studies with sufficient statistical power. Prior studies have also given little attention to the interaction of genomic characteristics and clinical risk factors. METHODS: This paper describes the design of a prospective case-control study to test these genetic associations in conjunction with more stringent data collection in respect to clinical features associated with pregnancy, particularly maternal infection. Here we consider the ethical requirements, our hypothesis that genetic susceptibility modifies the risk of cerebral palsy in the presence of perinatal environmental triggers, a priori primary and secondary aims, power calculations, participant recruitment strategies, data linkage, sampling methods of genetic material and subsequent SNP analysis, collection of clinical data and the proposed final statistical analysis.


Subject(s)
Cerebral Palsy/etiology , Cerebral Palsy/genetics , Cooperative Behavior , Pregnancy Complications/genetics , Research Design , Adolescent , Australia , Case-Control Studies , Child , Child, Preschool , DNA , Female , Humans , Polymorphism, Single Nucleotide , Pregnancy , Premature Birth/genetics , Prospective Studies , Risk Factors , Surveys and Questionnaires , Systemic Inflammatory Response Syndrome/genetics , Thrombophilia/genetics
15.
J Biomol Tech ; 20(5): 232-5, 2009 Dec.
Article in English | MEDLINE | ID: mdl-19949693

ABSTRACT

We sought a convenient and reliable method for collection of genetic material that is inexpensive and noninvasive and suitable for self-collection and mailing and a compatible, commercial DNA extraction protocol to meet quantitative and qualitative requirements for high-throughput single nucleotide polymorphism (SNP) multiplex analysis on an automated platform. Buccal swabs were collected from 34 individuals as part of a pilot study to test commercially available buccal swabs and DNA extraction kits. DNA was quantified on a spectrofluorometer with Picogreen dsDNA prior to testing the DNA integrity with predesigned SNP multiplex assays. Based on the pilot study results, the Catch-All swabs and Isohelix buccal DNA isolation kit were selected for our high-throughput application and extended to a further 1140 samples as part of a large cohort study. The average DNA yield in the pilot study (n=34) was 1.94 microg +/- 0.54 with a 94% genotyping pass rate. For the high-throughput application (n=1140), the average DNA yield was 2.44 microg +/- 1.74 with a >or=93% genotyping pass rate. The Catch-All buccal swabs are a convenient and cost-effective alternative to blood sampling. Combined with the Isohelix buccal DNA isolation kit, they provided DNA of sufficient quantity and quality for high-throughput SNP multiplex analysis.


Subject(s)
Biomedical Technology/methods , DNA/metabolism , Polymorphism, Single Nucleotide , Adolescent , Adult , Aged , Automation , Cheek , Child , Cohort Studies , Genotype , Humans , Middle Aged , Models, Genetic , Pilot Projects
16.
Aust N Z J Obstet Gynaecol ; 49(3): 247-53, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19566553

ABSTRACT

AIM: Cytokine polymorphisms may alter the fetal inflammatory response, increasing susceptibility to cerebral palsy (CP). This study investigates associations between selected inflammatory mediator and cytokine gene polymorphisms (Toll-like receptor-4 (TLR-4) Asp299Gly, interleukin-6 G-174C and interleukin-4 C-589T) and CP from 443 CP infants and 883 control infants. Results were correlated with viral nucleic acids in the same samples. RESULTS: At all gestational ages (GA), TLR-4 was associated with a decreased risk of developing CP (homozygous/heterozygous odds ratio (OR) 0.70, 95% confidence interval (CI) 0.50-0.98) and interleukin (IL)-6 was associated with an increased risk of developing hemiplegia (OR 1.38, 95% CI 1.05-1.83). For infants born 32-36 weeks GA, there was a tenfold increase in the risk of quadriplegic CP with homozygous/heterozygous IL-6 (OR 10.42, 95% CI 1.34-80.82). Viral exposure in combination with IL-4 in preterm infants was associated with a fourfold increased risk of quadriplegia (homozygous/heterozygous OR 4.25, 95% CI 1.21-14.95). In very preterm infants, the absence of detectable viral exposure in combination with IL-4 decreased the risk of developing CP (homozygous/heterozygous OR 0.31, 95% CI 0.13-0.76). CONCLUSION: Polymorphisms in TLR-4 may be associated with a decreased risk of CP. Polymorphisms in IL-6 or IL-4 may act as susceptibility genes, in the presence of viral exposure, for the development of hemiplegic and quadriplegic CP. These associations require confirmation but they suggest a hypothesis for CP causation due to double jeopardy from neurotropic viral exposure and genetic susceptibility to infection.


Subject(s)
Cerebral Palsy/genetics , Cerebral Palsy/virology , Genetic Predisposition to Disease/genetics , Polymorphism, Single Nucleotide/genetics , Pregnancy Complications, Infectious/virology , Virus Diseases/complications , Case-Control Studies , Female , Gestational Age , Humans , Infant, Newborn , Interleukin-4/genetics , Interleukin-6/genetics , Odds Ratio , Pregnancy , Registries , Toll-Like Receptor 4/genetics
17.
Hum Genet ; 124(4): 411-6, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18810496

ABSTRACT

Apolipoprotein E (APOE) plays a significant role in lipid metabolism and has been implicated in the growth and repair of injured neurons. Two small studies have suggested an association between APOE genotype and cerebral palsy. We investigated if APOE genotype is associated with an increased risk for cerebral palsy, influences the type of cerebral palsy or interacts with prenatal viral infection to influence risk of cerebral palsy. The population-based case-control study comprised newborn screening cards of 443 Caucasian patients with cerebral palsy and 883 Caucasian matched controls. APOE genotyping was performed on DNA extracted from dried blood spots. Allelic and genotypic frequencies did not differ between cases and controls and combined frequencies were 0.10 (epsilon2), 0.76 (epsilon3), 0.14 (epsilon4), 0.03 (epsilon2/epsilon2), 0.10 (epsilon2/epsilon3), 0.03 (epsilon2/epsilon4), 0.02 (epsilon4/epsilon4), 0.21 (epsilon3/epsilon4), 0.61 (epsilon3/epsilon3). APOE genotype was correlated with cerebral palsy, type of cerebral palsy, gestation at birth and the presence of viral nucleic acids detected in previous work. Analysis by gestational age (all gestational ages, >/=37, 32-36 and <32 weeks) and type of cerebral palsy (all types, diplegia, hemiplegia and quadriplegia) showed no association between APOE genotype and cerebral palsy in this Caucasian population. An association between prenatal viral infection, APOE genotype and cerebral palsy was not demonstrated. These results did not confirm an association between APOE genotype, cerebral palsy, type of cerebral palsy and prenatal infection in a Caucasian population. Given the low frequency of APOE epsilon2 and some of the heterozygote and homozygote combinations in this study, a larger study is assessing this further.


Subject(s)
Apolipoproteins E/genetics , Cerebral Palsy/genetics , White People/genetics , Case-Control Studies , Cerebral Palsy/diagnosis , Cerebral Palsy/virology , Female , Genotype , Humans , Polymerase Chain Reaction , Pregnancy , Prenatal Diagnosis
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