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1.
Neurology ; 101(14): e1434-e1447, 2023 10 03.
Article in English | MEDLINE | ID: mdl-37586882

ABSTRACT

BACKGROUND AND OBJECTIVES: This study aimed to identify CSF proteomic signatures characteristic of Parkinson disease (PD) and evaluate their clinical utility. METHODS: This observational study used data from the Parkinson's Progression Markers Initiative (PPMI), which enrolled patients with PD, healthy controls (HCs), and non-PD participants carrying GBA1, LRRK2, and/or SNCA pathogenic variants (genetic prodromals) at international sites. Study participants were chosen from PPMI enrollees based on the availability of aptamer-based CSF proteomic data, quantifying 4,071 proteins, and classified as patients with PD without GBA1, LRRK2, and/or SNCA pathogenic variants (nongenetic PD), HCs, patients with PD carrying the aforementioned pathogenic variants (genetic PD), or genetic prodromals. Differentially expressed protein (DEP) analysis and the least absolute shrinkage and selection operator (LASSO) were applied to the data from nongenetic PD and HCs. Signatures characteristics of nongenetic PD were quantified as a PD proteomic score (PD-ProS), validated internally and then externally using data of 1,556 CSF proteins from the LRRK2 Cohort Consortium (LCC). We further tested the PD-ProS in genetic PD and genetic prodromals and examined associations with clinical progression. RESULTS: Data from 279 patients with nongenetic PD (mean ± SD, age 62.0 ± 9.6 years; male 67.7%) and 141 HCs (age 60.5 ± 11.9 years; male 64.5%) were used for PD-ProS derivation. From 23 DEPs, LASSO determined weights of 14 DEPs for the PD-ProS (area under the curve [AUC] 0.83, 95% CI 0.78-0.87), validated in an independent internal validation cohort of 71 patients with nongenetic PD and 35 HCs (AUC 0.81, 95% CI 0.73-0.90). In the LCC, only 5 of the 14 DEPs were also measured. Notably, these 5 DEPs still distinguished 34 patients with nongenetic PD from 31 HCs with the same weights (AUC 0.75, 95% CI 0.63-0.87). Furthermore, the PD-ProS distinguished 258 patients with genetic PD from 365 genetic prodromals. Finally, regardless of genetic status, the PD-ProS independently predicted both cognitive and motor decline in PD (dementia, adjusted hazard ratio in the highest quintile [aHR-Q5] 2.8 [95% CI 1.6-5.0]; Hoehn and Yahr stage IV, aHR-Q5 2.1 [95% CI 1.1-4.0]). DISCUSSION: By integrating high-throughput proteomics with machine learning, we identified PD-associated CSF proteomic signatures crucial for PD development and progression. TRIAL REGISTRATION INFORMATION: ClinicalTrials.gov (NCT01176565). A link to the trial registry page is clinicaltrials.gov/ct2/show/NCT01141023. CLASSIFICATION OF EVIDENCE: This study provides Class II evidence that the CSF proteome contains clinically important information regarding the development and progression of Parkinson disease that can be deciphered by a combination of high-throughput proteomics and machine learning.


Subject(s)
Parkinson Disease , Humans , Male , Middle Aged , Aged , Parkinson Disease/genetics , Parkinson Disease/complications , Proteomics , Proportional Hazards Models , Machine Learning , Disease Progression
2.
NPJ Parkinsons Dis ; 9(1): 24, 2023 Feb 11.
Article in English | MEDLINE | ID: mdl-36774388

ABSTRACT

The pathogenesis and clinical heterogeneity of Parkinson's disease (PD) have been evaluated from molecular, pathophysiological, and clinical perspectives. High-throughput proteomic analysis of cerebrospinal fluid (CSF) opened new opportunities for scrutinizing this heterogeneity. To date, this is the most comprehensive CSF-based proteomics profiling study in PD with 569 patients (350 idiopathic patients, 65 GBA + mutation carriers and 154 LRRK2 + mutation carriers), 534 controls, and 4135 proteins analyzed. Combining CSF aptamer-based proteomics with genetics we determined protein quantitative trait loci (pQTLs). Analyses of pQTLs together with summary statistics from the largest PD genome wide association study (GWAS) identified 68 potential causal proteins by Mendelian randomization. The top causal protein, GPNMB, was previously reported to be upregulated in the substantia nigra of PD patients. We also compared the CSF proteomes of patients and controls. Proteome differences between GBA + patients and unaffected GBA + controls suggest degeneration of dopaminergic neurons, altered dopamine metabolism and increased brain inflammation. In the LRRK2 + subcohort we found dysregulated lysosomal degradation, altered alpha-synuclein processing, and neurotransmission. Proteome differences between idiopathic patients and controls suggest increased neuroinflammation, mitochondrial dysfunction/oxidative stress, altered iron metabolism and potential neuroprotection mediated by vasoactive substances. Finally, we used proteomic data to stratify idiopathic patients into "endotypes". The identified endotypes show differences in cognitive and motor disease progression based on previously reported protein-based risk scores.Our findings not only contribute to the identification of new therapeutic targets but also to shape personalized medicine in CNS neurodegeneration.

3.
Mol Aspects Med ; 82: 101018, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34489092

ABSTRACT

Autophagy is a catabolic process that promotes cellular fitness by clearing aggregated protein species, pathogens and damaged organelles through lysosomal degradation. The autophagic process is particularly important in the nervous system where post-mitotic neurons rely heavily on protein and organelle quality control in order to maintain cellular health throughout the lifetime of the organism. Alterations of autophagy and lysosomal function are hallmarks of various neurodegenerative disorders. In this review, we conceptualize some of the mechanistic and genetic evidence pointing towards autophagy and lysosomal dysfunction as a causal driver of neurodegeneration. Furthermore, we discuss rate-limiting pathway nodes and potential approaches to restore pathway activity, from autophagy initiation, cargo sequestration to lysosomal capacity.


Subject(s)
Lysosomes , Neurodegenerative Diseases , Autophagy/genetics , Humans , Neurodegenerative Diseases/genetics , Neurons
4.
Proc Natl Acad Sci U S A ; 116(31): 15716-15724, 2019 07 30.
Article in English | MEDLINE | ID: mdl-31315980

ABSTRACT

In adult skeletal muscles, 2 junctophilin isoforms (JPH1 and JPH2) tether the sarcoplasmic reticulum (SR) to transverse tubule (T-tubule) membranes, generating stable membrane contact sites known as triads. JPHs are anchored to the membrane of the SR by a C-terminal transmembrane domain (TMD) and bind the T-tubule membrane through their cytosolic N-terminal region, which contains 8 lipid-binding (MORN) motifs. By combining expression of GFP-JPH1 deletion mutants in skeletal muscle fibers with in vitro biochemical experiments, we investigated the molecular determinants of JPH1 recruitment at triads in adult skeletal muscle fibers. We found that MORN motifs bind PI(4,5)P2 in the sarcolemma, but do not mediate the selective localization of JPH1 at the T-tubule compartment of triads. On the contrary, fusion proteins containing only the TMD of JPH1 were able to localize at the junctional SR compartment of the triad. Bimolecular fluorescence complementation experiments indicated that the TMD of JPH1 can form dimers, suggesting that the observed localization at triads may result from dimerization with the TMDs of resident JPH1. A second domain, capable of mediating homo- and heterodimeric interactions between JPH1 and JPH2 was identified in the cytosolic region. FRAP experiments revealed that removal of either one of these 2 domains in JPH1 decreases the association of the resulting mutant proteins with triads. Altogether, these results suggest that the ability to establish homo- and heterodimeric interactions with resident JPHs may support the recruitment and stability of newly synthesized JPHs at triads in adult skeletal muscle fibers.


Subject(s)
Membrane Proteins/metabolism , Muscle Fibers, Skeletal/metabolism , Muscle Proteins/metabolism , Sarcolemma/metabolism , Amino Acid Motifs , Animals , Humans , Membrane Proteins/genetics , Mice , Muscle Proteins/genetics , Mutation , Protein Domains , Rats , Rats, Sprague-Dawley , Sarcolemma/genetics
5.
Proc Natl Acad Sci U S A ; 116(12): 5775-5784, 2019 03 19.
Article in English | MEDLINE | ID: mdl-30819882

ABSTRACT

Close appositions between the endoplasmic reticulum (ER) and the plasma membrane (PM) are a general feature of all cells and are abundant in neurons. A function of these appositions is lipid transport between the two adjacent bilayers via tethering proteins that also contain lipid transport modules. However, little is known about the properties and dynamics of these proteins in neurons. Here we focused on TMEM24/C2CD2L, an ER-localized SMP domain containing phospholipid transporter expressed at high levels in the brain, previously shown to be a component of ER-PM contacts in pancreatic ß-cells. TMEM24 is enriched in neurons versus glial cells and its levels increase in parallel with neuronal differentiation. It populates ER-PM contacts in resting neurons, but elevations of cytosolic Ca2+ mediated by experimental manipulations or spontaneous activity induce its transient redistribution throughout the entire ER. Dissociation of TMEM24 from the plasma membrane is mediated by phosphorylation of an array of sites in the C-terminal region of the protein. These sites are only partially conserved in C2CD2, the paralogue of TMEM24 primarily expressed in nonneuronal tissues, which correspondingly display a much lower sensitivity to Ca2+ elevations. ER-PM contacts in neurons are also sites where Kv2 (the major delayed rectifier K+ channels in brain) and other PM and ER ion channels are concentrated, raising the possibility of a regulatory feedback mechanism between neuronal excitability and lipid exchange between the ER and the PM.


Subject(s)
Calcium Signaling/physiology , Membrane Proteins/metabolism , Neurons/physiology , Animals , Calcium/metabolism , Calcium Channels/metabolism , Cell Line , Cell Membrane/metabolism , Endoplasmic Reticulum/metabolism , Humans , Lipids , Mammals/metabolism , Membrane Proteins/physiology , Mice , Neurons/metabolism , Phospholipids/metabolism , Phosphorylation , Primary Cell Culture , Synaptotagmins/metabolism
6.
Methods Mol Biol ; 1847: 13-22, 2018.
Article in English | MEDLINE | ID: mdl-30129006

ABSTRACT

More than a trillion nerve terminals interconnect neurons in the human brain. These terminals are fundamental for signal transmission and nerve cell communication. Among other techniques, the isolation of nerve terminals [or synaptosomes (Whittaker et al. Biochem J, 90(2):293-303, 1964)] has been fundamental to study the biochemistry and the physiology of the nervous system. This chapter describes the isolation and purification of intact synaptosomes from rodent brain tissue that can be used to further characterize synaptic structure and function and to examine the molecular mechanisms of neurotransmission.


Subject(s)
Brain/metabolism , Cell Fractionation , Centrifugation, Density Gradient , Synaptosomes/metabolism , Animals , Cell Fractionation/methods , Centrifugation, Density Gradient/methods , Mammals , Rodentia , Subcellular Fractions , Workflow
7.
Mol Neurobiol ; 55(10): 8084-8102, 2018 Oct.
Article in English | MEDLINE | ID: mdl-29508281

ABSTRACT

The striatal-enriched protein tyrosine phosphatase (STEP) is a brain-specific phosphatase involved in synaptic transmission. The current hypothesis on STEP function holds that it opposes synaptic strengthening by dephosphorylating and inactivating key neuronal proteins involved in synaptic plasticity and intracellular signaling, such as the MAP kinases ERK1/2 and p38, as well as the tyrosine kinase Fyn. Although STEP has a predominant role at the post-synaptic level, it is also expressed in nerve terminals. To better investigate its physiological role at the presynaptic level, we functionally investigated brain synaptosomes and autaptic hippocampal neurons from STEP knockout (KO) mice. Synaptosomes purified from mutant mice were characterized by an increased basal and evoked glutamate release compared with wild-type animals. Under resting conditions, STEP KO synaptosomes displayed increased cytosolic Ca2+ levels accompanied by an enhanced basal activity of Ca2+/calmodulin-dependent protein kinase type II (CaMKII) and hyperphosphorylation of synapsin I at CaMKII sites. Moreover, STEP KO hippocampal neurons exhibit an increase of excitatory synaptic strength attributable to an increased size of the readily releasable pool of synaptic vesicles. These results provide new evidence that STEP plays an important role at nerve terminals in the regulation of Ca2+ homeostasis and neurotransmitter release.


Subject(s)
Calcium/metabolism , Glutamic Acid/metabolism , Homeostasis , Intracellular Space/metabolism , Neostriatum/metabolism , Protein Tyrosine Phosphatases, Non-Receptor/deficiency , Synaptic Transmission , Animals , Calcineurin/metabolism , Calcium-Calmodulin-Dependent Protein Kinase Type 2/metabolism , Cytosol/metabolism , Extracellular Signal-Regulated MAP Kinases/metabolism , Hippocampus/metabolism , Hippocampus/pathology , Inositol 1,4,5-Trisphosphate Receptors/metabolism , Mice, Knockout , Models, Biological , Mutation/genetics , Phosphorylation , Presynaptic Terminals/metabolism , Protein Tyrosine Phosphatases, Non-Receptor/metabolism , Synapses/metabolism , Synapsins/metabolism , Synaptosomes/metabolism
8.
Proc Natl Acad Sci U S A ; 115(10): E2238-E2245, 2018 03 06.
Article in English | MEDLINE | ID: mdl-29463750

ABSTRACT

Methods to acutely manipulate protein interactions at the subcellular level are powerful tools in cell biology. Several blue-light-dependent optical dimerization tools have been developed. In these systems one protein component of the dimer (the bait) is directed to a specific subcellular location, while the other component (the prey) is fused to the protein of interest. Upon illumination, binding of the prey to the bait results in its subcellular redistribution. Here, we compared and quantified the extent of light-dependent dimer occurrence in small, subcellular volumes controlled by three such tools: Cry2/CIB1, iLID, and Magnets. We show that both the location of the photoreceptor protein(s) in the dimer pair and its (their) switch-off kinetics determine the subcellular volume where dimer formation occurs and the amount of protein recruited in the illuminated volume. Efficient spatial confinement of dimer to the area of illumination is achieved when the photosensitive component of the dimerization pair is tethered to the membrane of intracellular compartments and when on and off kinetics are extremely fast, as achieved with iLID or Magnets. Magnets and the iLID variants with the fastest switch-off kinetics induce and maintain protein dimerization in the smallest volume, although this comes at the expense of the total amount of dimer. These findings highlight the distinct features of different optical dimerization systems and will be useful guides in the choice of tools for specific applications.


Subject(s)
Arabidopsis Proteins/metabolism , Basic Helix-Loop-Helix Transcription Factors/metabolism , Cryptochromes/metabolism , Cytoplasm/radiation effects , Photoreceptors, Microbial/chemistry , Protein Binding/radiation effects , Animals , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/genetics , Basic Helix-Loop-Helix Transcription Factors/chemistry , Basic Helix-Loop-Helix Transcription Factors/genetics , Cryptochromes/chemistry , Cryptochromes/genetics , Cytoplasm/chemistry , Cytoplasm/genetics , Cytoplasm/metabolism , HeLa Cells , Humans , Kinetics , Mice , Mitochondria/chemistry , Mitochondria/genetics , Mitochondria/metabolism , Mitochondria/radiation effects , Neurospora crassa/chemistry , Neurospora crassa/metabolism , Neurospora crassa/radiation effects , Photoreceptors, Microbial/genetics , Photoreceptors, Microbial/metabolism , Protein Multimerization/radiation effects
9.
Science ; 355(6326)2017 02 17.
Article in English | MEDLINE | ID: mdl-28209843

ABSTRACT

Insulin is released by ß cells in pulses regulated by calcium and phosphoinositide signaling. Here, we describe how transmembrane protein 24 (TMEM24) helps coordinate these signaling events. We showed that TMEM24 is an endoplasmic reticulum (ER)-anchored membrane protein whose reversible localization to ER-plasma membrane (PM) contacts is governed by phosphorylation and dephosphorylation in response to oscillations in cytosolic calcium. A lipid-binding module in TMEM24 transports the phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2] precursor phosphatidylinositol between bilayers, allowing replenishment of PI(4,5)P2 hydrolyzed during signaling. In the absence of TMEM24, calcium oscillations are abolished, leading to a defect in triggered insulin release. Our findings implicate direct lipid transport between the ER and the PM in the control of insulin secretion, a process impaired in patients with type II diabetes.


Subject(s)
Endoplasmic Reticulum/metabolism , Insulin/metabolism , Lipid Metabolism , Membrane Proteins/metabolism , Phosphatidylinositol 4,5-Diphosphate/metabolism , Animals , Biological Transport , COS Cells , Calcium Signaling , Cell Membrane/metabolism , Chlorocebus aethiops , Gene Knockout Techniques , HeLa Cells , Humans , Hydrolysis , Insulin Secretion , Membrane Proteins/genetics , Phosphorylation
10.
Mol Neurobiol ; 54(1): 484-494, 2017 01.
Article in English | MEDLINE | ID: mdl-26742525

ABSTRACT

Synapsins (Syns) are synaptic vesicle-associated phosphoproteins involved in neuronal development and neurotransmitter release. While Syns are implicated in the regulation of brain-derived neurotrophic factor (BDNF)-induced neurotransmitter release, their role in the BDNF developmental effects has not been fully elucidated. By using primary cortical neurons from Syn I knockout (KO) and Syn I/II/III KO mice, we studied the effects of BDNF and nerve growth factor (NGF) on axonal growth. While NGF had similar effects in all genotypes, BDNF induced significant differences in Syn KO axonal outgrowth compared to wild type (WT), an effect that was rescued by the re-expression of Syn I. Moreover, the significant increase of axonal branching induced by BDNF in WT neurons was not detectable in Syn KO neurons. The expression analysis of BDNF receptors in Syn KO neurons revealed a significant decrease of the full length TrkB receptor and an increase in the levels of the truncated TrkB.t1 isoform and p75NTR associated with a marked reduction of the BDNF-induced MAPK/Erk activation. By using the Trk inhibitor K252a, we demonstrated that these differences in BDNF effects were dependent on a TrkB/p75NTR imbalance. The data indicate that Syn I plays a pivotal role in the BDNF signal transduction during axonal growth.


Subject(s)
Axons/drug effects , Axons/metabolism , Brain-Derived Neurotrophic Factor/pharmacology , Synapsins/metabolism , Animals , Cell Enlargement/drug effects , Cells, Cultured , Mice , Mice, Inbred C57BL , Mice, Knockout
11.
Nat Cell Biol ; 18(1): 132-8, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26571211

ABSTRACT

Genetic defects in myelin formation and maintenance cause leukodystrophies, a group of white matter diseases whose mechanistic underpinnings are poorly understood. Hypomyelination and congenital cataract (HCC), one of these disorders, is caused by mutations in FAM126A, a gene of unknown function. We show that FAM126A, also known as hyccin, regulates the synthesis of phosphatidylinositol 4-phosphate (PtdIns(4)P), a determinant of plasma membrane identity. HCC patient fibroblasts exhibit reduced PtdIns(4)P levels. FAM126A is an intrinsic component of the plasma membrane phosphatidylinositol 4-kinase complex that comprises PI4KIIIα and its adaptors TTC7 and EFR3 (refs 5,7). A FAM126A-TTC7 co-crystal structure reveals an all-α-helical heterodimer with a large protein-protein interface and a conserved surface that may mediate binding to PI4KIIIα. Absence of FAM126A, the predominant FAM126 isoform in oligodendrocytes, destabilizes the PI4KIIIα complex in mouse brain and patient fibroblasts. We propose that HCC pathogenesis involves defects in PtdIns(4)P production in oligodendrocytes, whose specialized function requires massive plasma membrane expansion and thus generation of PtdIns(4)P and downstream phosphoinositides. Our results point to a role for FAM126A in supporting myelination, an important process in development and also following acute exacerbations in multiple sclerosis.


Subject(s)
Cell Membrane/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Membrane Proteins/metabolism , Phosphatidylinositol Phosphates/biosynthesis , Animals , Humans , Mice , Mutation/genetics , Phosphatidylinositol Phosphates/genetics , Protein Structure, Tertiary , Protein Transport/genetics , Protein Transport/physiology
12.
J Cell Biol ; 209(1): 85-95, 2015 Apr 13.
Article in English | MEDLINE | ID: mdl-25869668

ABSTRACT

The recruitment of inositol phosphatases to endocytic membranes mediates dephosphorylation of PI(4,5)P2, a phosphoinositide concentrated in the plasma membrane, and prevents its accumulation on endosomes. The importance of the conversion of PI(4,5)P2 to PtdIns during endocytosis is demonstrated by the presence of both a 5-phosphatase and a 4-phosphatase (Sac domain) module in the synaptojanins, endocytic PI(4,5)P2 phosphatases conserved from yeast to humans and the only PI(4,5)P2 phosphatases in yeast. OCRL, another 5-phosphatase that couples endocytosis to PI(4,5)P2 dephosphorylation, lacks a Sac domain. Here we show that Sac2/INPP5F is a PI4P phosphatase that colocalizes with OCRL on endocytic membranes, including vesicles formed by clathrin-mediated endocytosis, macropinosomes, and Rab5 endosomes. An OCRL-Sac2/INPP5F interaction could be demonstrated by coimmunoprecipitation and was potentiated by Rab5, whose activity is required to recruit Sac2/INPP5F to endosomes. Sac2/INPP5F and OCRL may cooperate in the sequential dephosphorylation of PI(4,5)P2 at the 5 and 4 position of inositol in a partnership that mimics that of the two phosphatase modules of synaptojanin.


Subject(s)
Endocytosis , Endosomes/enzymology , Phosphoric Monoester Hydrolases/physiology , Animals , COS Cells , Chlorocebus aethiops , HEK293 Cells , Humans , Inositol Polyphosphate 5-Phosphatases , Mice, Knockout , Phosphoric Monoester Hydrolases/metabolism , Protein Transport , rab5 GTP-Binding Proteins/metabolism
13.
Elife ; 3: e02975, 2014 Aug 08.
Article in English | MEDLINE | ID: mdl-25107275

ABSTRACT

Mutations in the inositol 5-phosphatase OCRL cause Lowe syndrome and Dent's disease. Although OCRL, a direct clathrin interactor, is recruited to late-stage clathrin-coated pits, clinical manifestations have been primarily attributed to intracellular sorting defects. Here we show that OCRL loss in Lowe syndrome patient fibroblasts impacts clathrin-mediated endocytosis and results in an endocytic defect. These cells exhibit an accumulation of clathrin-coated vesicles and an increase in U-shaped clathrin-coated pits, which may result from sequestration of coat components on uncoated vesicles. Endocytic vesicles that fail to lose their coat nucleate the majority of the numerous actin comets present in patient cells. SNX9, an adaptor that couples late-stage endocytic coated pits to actin polymerization and which we found to bind OCRL directly, remains associated with such vesicles. These results indicate that OCRL acts as an uncoating factor and that defects in clathrin-mediated endocytosis likely contribute to pathology in patients with OCRL mutations.


Subject(s)
Clathrin/metabolism , Coated Pits, Cell-Membrane/metabolism , Fibroblasts/metabolism , Phosphoric Monoester Hydrolases/metabolism , Cells, Cultured , Clathrin-Coated Vesicles/metabolism , Clathrin-Coated Vesicles/ultrastructure , Coated Pits, Cell-Membrane/ultrastructure , Endocytosis/genetics , HEK293 Cells , HeLa Cells , Humans , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Microscopy, Confocal , Microscopy, Electron , Microscopy, Fluorescence/methods , Mutation , Oculocerebrorenal Syndrome/genetics , Oculocerebrorenal Syndrome/metabolism , Oculocerebrorenal Syndrome/pathology , Phosphatidylinositol Phosphates/metabolism , Phosphoric Monoester Hydrolases/genetics , Protein Binding , Proteome/genetics , Proteome/metabolism , Proteomics/methods , RNA Interference , Sorting Nexins/genetics , Sorting Nexins/metabolism
14.
Elife ; 3: e03311, 2014 Aug 13.
Article in English | MEDLINE | ID: mdl-25122462

ABSTRACT

Epsin is an evolutionarily conserved endocytic clathrin adaptor whose most critical function(s) in clathrin coat dynamics remain(s) elusive. To elucidate such function(s), we generated embryonic fibroblasts from conditional epsin triple KO mice. Triple KO cells displayed a dramatic cell division defect. Additionally, a robust impairment in clathrin-mediated endocytosis was observed, with an accumulation of early and U-shaped pits. This defect correlated with a perturbation of the coupling between the clathrin coat and the actin cytoskeleton, which we confirmed in a cell-free assay of endocytosis. Our results indicate that a key evolutionary conserved function of epsin, in addition to other roles that include, as we show here, a low affinity interaction with SNAREs, is to help generate the force that leads to invagination and then fission of clathrin-coated pits.


Subject(s)
Actin Cytoskeleton/metabolism , Actins/metabolism , Adaptor Proteins, Vesicular Transport/genetics , Clathrin/metabolism , Coated Pits, Cell-Membrane/metabolism , Endocytosis/genetics , Actin Cytoskeleton/genetics , Actin Cytoskeleton/ultrastructure , Actins/genetics , Adaptor Proteins, Vesicular Transport/deficiency , Animals , Clathrin/genetics , Coated Pits, Cell-Membrane/genetics , Coated Pits, Cell-Membrane/ultrastructure , Embryo, Mammalian , Fibroblasts/metabolism , Fibroblasts/ultrastructure , Gene Expression , Mice , Mice, Knockout , Primary Cell Culture , Protein Binding , SNARE Proteins/genetics , SNARE Proteins/metabolism , Signal Transduction
15.
Elife ; 3: e01621, 2014 Jun 24.
Article in English | MEDLINE | ID: mdl-24963135

ABSTRACT

The exocytosis of synaptic vesicles (SVs) elicited by potent stimulation is rapidly compensated by bulk endocytosis of SV membranes leading to large endocytic vacuoles ('bulk' endosomes). Subsequently, these vacuoles disappear in parallel with the reappearance of new SVs. We have used synapses of dynamin 1 and 3 double knock-out neurons, where clathrin-mediated endocytosis (CME) is dramatically impaired, to gain insight into the poorly understood mechanisms underlying this process. Massive formation of bulk endosomes was not defective, but rather enhanced, in the absence of dynamin 1 and 3. The subsequent conversion of bulk endosomes into SVs was not accompanied by the accumulation of clathrin coated buds on their surface and this process proceeded even after further clathrin knock-down, suggesting its independence of clathrin. These findings support the existence of a pathway for SV reformation that bypasses the requirement for clathrin and dynamin 1/3 and that operates during intense synaptic activity.


Subject(s)
Clathrin/genetics , Dynamin III/genetics , Dynamin I/genetics , Endocytosis/genetics , Neurons/metabolism , Synaptic Vesicles/metabolism , Animals , Clathrin/deficiency , Dynamin I/deficiency , Dynamin III/deficiency , Embryo, Mammalian , Endosomes/metabolism , Exocytosis/genetics , Gene Expression Regulation, Developmental , Gene Knockdown Techniques , Mice , Nerve Tissue Proteins/genetics , Nerve Tissue Proteins/metabolism , Neurons/cytology , Primary Cell Culture , Synapses/genetics , Synapses/metabolism , Synaptic Transmission
16.
Elife ; 2: e00845, 2013 Jul 30.
Article in English | MEDLINE | ID: mdl-23908769

ABSTRACT

Modulation of synaptic vesicle retrieval is considered to be potentially important in steady-state synaptic performance. Here we show that at physiological temperature endocytosis kinetics at hippocampal and cortical nerve terminals show a bi-phasic dependence on electrical activity. Endocytosis accelerates for the first 15-25 APs during bursts of action potential firing, after which it slows with increasing burst length creating an optimum stimulus for this kinetic parameter. We show that activity-dependent acceleration is only prominent at physiological temperature and that the mechanism of this modulation is based on the dephosphorylation of dynamin 1. Nerve terminals in which dynamin 1 and 3 have been replaced with dynamin 1 harboring dephospho- or phospho-mimetic mutations in the proline-rich domain eliminate the acceleration phase by either setting endocytosis at an accelerated state or a decelerated state, respectively. DOI:http://dx.doi.org/10.7554/eLife.00845.001.


Subject(s)
Action Potentials , Dynamins/metabolism , Endocytosis , Calcium/metabolism , Hippocampus/metabolism , Hippocampus/physiology , Humans , Kinetics , Phosphorylation , Temperature
17.
J Clin Invest ; 122(12): 4424-38, 2012 Dec.
Article in English | MEDLINE | ID: mdl-23187125

ABSTRACT

Epsins are a family of ubiquitin-binding, endocytic clathrin adaptors. Mice lacking both epsins 1 and 2 (Epn1/2) die at embryonic day 10 and exhibit an abnormal vascular phenotype. To examine the angiogenic role of endothelial epsins, we generated mice with constitutive or inducible deletion of Epn1/2 in vascular endothelium. These mice exhibited no abnormal phenotypes under normal conditions, suggesting that lack of endothelial epsins 1 and 2 did not affect normal blood vessels. In tumors, however, loss of epsins 1 and 2 resulted in disorganized vasculature, significantly increased vascular permeability, and markedly retarded tumor growth. Mechanistically, we show that VEGF promoted binding of epsin to ubiquitinated VEGFR2. Loss of epsins 1 and 2 specifically impaired endocytosis and degradation of VEGFR2, which resulted in excessive VEGF signaling that compromised tumor vascular function by exacerbating nonproductive leaky angiogenesis. This suggests that tumor vasculature requires a balance in VEGF signaling to provide sufficient productive angiogenesis for tumor development and that endothelial epsins 1 and 2 negatively regulate the output of VEGF signaling. Promotion of excessive VEGF signaling within tumors via a block of epsin 1 and 2 function may represent a strategy to prevent normal angiogenesis in cancer patients who are resistant to anti-VEGF therapies.


Subject(s)
Adaptor Proteins, Vesicular Transport/genetics , Cell Proliferation , Human Umbilical Vein Endothelial Cells/metabolism , Signal Transduction , Vascular Endothelial Growth Factor A/physiology , Adaptor Proteins, Vesicular Transport/deficiency , Animals , Capillary Permeability , Carcinoma, Lewis Lung/blood supply , Carcinoma, Lewis Lung/metabolism , Carcinoma, Lewis Lung/pathology , Cell Movement , Endocytosis , HEK293 Cells , Human Umbilical Vein Endothelial Cells/physiology , Humans , Intercellular Junctions/metabolism , Intercellular Junctions/pathology , Male , Mice , Mice, Knockout , Neoplasm Transplantation , Neovascularization, Pathologic/metabolism , Neovascularization, Pathologic/pathology , Proteolysis , Tumor Burden , Vascular Endothelial Growth Factor A/metabolism , Vascular Endothelial Growth Factor Receptor-2/metabolism
18.
PLoS One ; 7(4): e34648, 2012.
Article in English | MEDLINE | ID: mdl-22493706

ABSTRACT

The interplay between anatomical connectivity and dynamics in neural networks plays a key role in the functional properties of the brain and in the associated connectivity changes induced by neural diseases. However, a detailed experimental investigation of this interplay at both cellular and population scales in the living brain is limited by accessibility. Alternatively, to investigate the basic operational principles with morphological, electrophysiological and computational methods, the activity emerging from large in vitro networks of primary neurons organized with imposed topologies can be studied. Here, we validated the use of a new bio-printing approach, which effectively maintains the topology of hippocampal cultures in vitro and investigated, by patch-clamp and MEA electrophysiology, the emerging functional properties of these grid-confined networks. In spite of differences in the organization of physical connectivity, our bio-patterned grid networks retained the key properties of synaptic transmission, short-term plasticity and overall network activity with respect to random networks. Interestingly, the imposed grid topology resulted in a reinforcement of functional connections along orthogonal directions, shorter connectivity links and a greatly increased spiking probability in response to focal stimulation. These results clearly demonstrate that reliable functional studies can nowadays be performed on large neuronal networks in the presence of sustained changes in the physical network connectivity.


Subject(s)
Hippocampus/physiology , Nerve Net/physiology , Neurons/physiology , Synaptic Transmission/physiology , Animals , Electrochemical Techniques , Electrophysiology , Hippocampus/cytology , Models, Biological , Nerve Net/cytology , Neuronal Plasticity/physiology , Patch-Clamp Techniques , Primary Cell Culture , Rats , Synapses/physiology
19.
Proc Natl Acad Sci U S A ; 109(8): E515-23, 2012 Feb 21.
Article in English | MEDLINE | ID: mdl-22308498

ABSTRACT

Endocytic recycling of synaptic vesicles after exocytosis is critical for nervous system function. At synapses of cultured neurons that lack the two "neuronal" dynamins, dynamin 1 and 3, smaller excitatory postsynaptic currents are observed due to an impairment of the fission reaction of endocytosis that results in an accumulation of arrested clathrin-coated pits and a greatly reduced synaptic vesicle number. Surprisingly, despite a smaller readily releasable vesicle pool and fewer docked vesicles, a strong facilitation, which correlated with lower vesicle release probability, was observed upon action potential stimulation at such synapses. Furthermore, although network activity in mutant cultures was lower, Ca(2+)/calmodulin-dependent protein kinase II (CaMKII) activity was unexpectedly increased, consistent with the previous report of an enhanced state of synapsin 1 phosphorylation at CaMKII-dependent sites in such neurons. These changes were partially reversed by overnight silencing of synaptic activity with tetrodotoxin, a treatment that allows progression of arrested endocytic pits to synaptic vesicles. Facilitation was also counteracted by CaMKII inhibition. These findings reveal a mechanism aimed at preventing synaptic transmission failure due to vesicle depletion when recycling vesicle traffic is backed up by a defect in dynamin-dependent endocytosis and provide new insight into the coupling between endocytosis and exocytosis.


Subject(s)
Dynamins/metabolism , Mutation/genetics , Synaptic Transmission/physiology , Synaptic Vesicles/metabolism , Animals , Calcium-Calmodulin-Dependent Protein Kinase Type 2/metabolism , Cerebral Cortex/pathology , Mice , Mice, Knockout , Neurons/metabolism , Synaptic Vesicles/enzymology , Synaptic Vesicles/ultrastructure , Up-Regulation
20.
J Neurosci ; 31(49): 18149-54, 2011 Dec 07.
Article in English | MEDLINE | ID: mdl-22159126

ABSTRACT

Sustained neurotransmitter release at synapses during high-frequency synaptic activity involves the mobilization of synaptic vesicles (SVs) from the tightly clustered reserve pool (RP). Synapsin I (Syn I), a brain-specific peripheral membrane protein that undergoes activity-dependent cycles of SV association and dissociation, is implicated in RP organization via its ability to cluster SVs. Although Syn I has affinity for phospholipids, the mechanism for the reversible association of synapsin with SV membranes remains enigmatic. Here, we show that rat Syn I is able to sense membrane curvature via an evolutionary conserved amphipathic lipid packing sensor motif (ALPS). Deletion or mutational inactivation of the ALPS impairs the ability of Syn I to associate with highly curved membranes and with SVs. Furthermore, a Syn I mutant lacking ALPS displays defects in its ability to undergo activity-induced cycles of dispersion and reclustering in neurons and fails to induce vesicle clustering in vitro. Our data suggest a crucial role for ALPS-mediated sensing of membrane curvature in regulating synapsin function.


Subject(s)
Lipid Metabolism , Lipids/chemistry , Liposomes/metabolism , Neurons/cytology , Synapsins/metabolism , Synaptic Vesicles/metabolism , Animals , Cell Line, Transformed , Embryo, Mammalian , Female , Green Fluorescent Proteins/genetics , Hippocampus/cytology , Humans , Male , Membranes, Artificial , Mice , Protein Structure, Tertiary/genetics , Synapsins/genetics , Synaptic Vesicles/genetics , Transfection/methods
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