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1.
Ann Surg Oncol ; 30(13): 7996-8005, 2023 Dec.
Article in English | MEDLINE | ID: mdl-37782413

ABSTRACT

BACKGROUND: Histopathological growth patterns (HGPs) are a prognostic biomarker in colorectal liver metastases (CRLM). Desmoplastic HGP (dHGP) is associated with liver-only recurrence and superior overall survival (OS), while non-dHGP is associated with multi-organ recurrence and inferior OS. This study investigated the predictive value of HGPs for adjuvant hepatic arterial infusion pump (HAIP) chemotherapy in CRLM. METHODS: Patients undergoing resection of CRLM and perioperative systemic chemotherapy in two centers were included. Survival outcomes and the predictive value of HAIP versus no HAIP per HGP group were evaluated through Kaplan-Meier and Cox regression methods, respectively. RESULTS: We included 1233 patients. In the dHGP group (n = 291, 24%), HAIP chemotherapy was administered in 75 patients (26%). In the non-dHGP group (n = 942, 76%), HAIP chemotherapy was administered in 247 patients (26%). dHGP was associated with improved overall survival (OS, HR 0.49, 95% CI 0.32-0.73, p < 0.001). HAIP chemotherapy was associated with improved OS (HR 0.61, 95% CI 0.45-0.82, p < 0.001). No interaction could be demonstrated between HGP and HAIP on OS (HR 1.29, 95% CI 0.72-2.32, p = 0.40). CONCLUSIONS: There is no evidence that HGPs of CRLM modify the survival benefit of adjuvant HAIP chemotherapy in patients with resected CRLM.


Subject(s)
Colorectal Neoplasms , Liver Neoplasms , Humans , Colorectal Neoplasms/pathology , Hepatectomy , Retrospective Studies , Chemotherapy, Adjuvant , Liver Neoplasms/surgery , Infusion Pumps, Implantable
2.
Clin Exp Metastasis ; 40(3): 227-234, 2023 06.
Article in English | MEDLINE | ID: mdl-37183203

ABSTRACT

Histopathological growth patterns (HGPs) of liver metastases represent a potential biomarker for prognosis after resection. They have never been studied in neuroendocrine tumor liver metastases (NETLM). This study evaluated if distinct HGPs can be observed in resected NETLM and if they have prognostic value. Sixty-three patients who underwent resection of NETLM between 01-01-2001 and 31-12-2021 were retrospectively included. HGPs were scored on Haematoxylin&Eosin slides using light microscopy, distinguishing desmoplastic- (dHGP), pushing- (pHGP) and replacement HGP (rHGP). Average HGP scores were calculated per patient. Each patient was classified according to predominant HGP. Overall and Disease-Free Survival (OS and DFS) were evaluated through Kaplan-Meier analysis and Cox regression. Eighteen patients had predominant dHGP (29%), 33 had predominant pHGP (52%) and 11 had predominant rHGP (17%). One patient had mixed HGP (2%). Five-year OS was 76% (95%CI: 66-87%) for the overall cohort. Five-year OS was 92% (95%CI: 77-100%) for dHGP, was 73% (95%CI: 59-91%) for pHGP, 50% (95%CI: 25-100%) for rHGP. Five-year DFS was 39% (95%CI: 19-83%) for dHGP, 44% (95%CI: 27-71%) for rHGP and 50% (95%CI: 23-100%) for pHGP. There was no significant association between HGP and OS or DFS in multivariable analysis. Distinct HGPs could be identified in NETLM. In patients who underwent resection of NETLM, no association was found between HGPs and postoperative survival. Half of the patients with NETLM have a predominant pushing growth pattern, which is a rare growth pattern in liver metastases from breast and colorectal cancer.


Subject(s)
Colorectal Neoplasms , Liver Neoplasms , Neuroendocrine Tumors , Humans , Retrospective Studies , Colorectal Neoplasms/pathology , Neuroendocrine Tumors/surgery , Liver Neoplasms/secondary , Prognosis , Hepatectomy
3.
Clin Exp Metastasis ; 40(1): 69-77, 2023 02.
Article in English | MEDLINE | ID: mdl-36326981

ABSTRACT

Histopathological Growth Patterns (HGPs) have prognostic and predictive value in patients with Colorectal Liver Metastases (CRLM). This study examined whether preoperative measurement of Circulating Tumour Cells (CTCs) is associated with HGP. CTCs were prospectively enumerated in 7.5 ml of blood using the FDA-approved CellSearch system in patients who underwent local treatment of CRLM with curative intent between 2008 and 2021. All CTC samples were collected on the day of local treatment. Patients treated with neoadjuvant chemotherapy for CRLM or with extrahepatic disease at the time of CTC sampling were excluded. HGP was scored retrospectively following the current consensus guidelines. The association between CTCs and HGP was investigated through multivariable logistic regression. Data were available for 177 patients, desmoplastic HGP (dHGP) was observed in 34 patients (19%). There were no statistically significant differences in patient and tumour characteristics between dHGP and non-dHGP at baseline. Patients with dHGP had longer overall - and disease-free survival (logrank p = 0.003 and 0.003, respectively) compared to patients with non-dHGP. CTCs were not detected in 25(74%) of dHGP patients and in 68(48%) of non-dHGP patients (chi-squared p = 0.006). Preoperative absence of CTCs was the only significant predictor for dHGP in multivariable logistic regression (Odds Ratio 2.7, 95%CI 1.1-6.8, p = 0.028), Table 3. Preoperative absence of CTCs is associated with dHGP in chemo naive CRLM patients without extrahepatic disease. Based on our results, CTC count alone is not sufficient to preoperatively identify HGPs, but integration of CTC count in multivariable prediction models may aid the preoperative identification of HGPs of CRLM.


Subject(s)
Colorectal Neoplasms , Liver Neoplasms , Neoplastic Cells, Circulating , Humans , Neoplastic Cells, Circulating/pathology , Retrospective Studies , Colorectal Neoplasms/pathology , Liver Neoplasms/secondary , Prognosis
4.
Eur J Surg Oncol ; 48(5): 1104-1109, 2022 05.
Article in English | MEDLINE | ID: mdl-34895970

ABSTRACT

BACKGROUND: This study aimed to describe the treatment of metachronous colorectal cancer metastases in a recent population-based cohort. METHOD: Patients with stage I-III colorectal cancer (CRC), diagnosed between January 1st and June 30th, 2015 who were surgically treated with curative intent were selected from the Netherlands Cancer Registry. Follow-up was at least 3 years after diagnosis of the primary tumour. Treatment of metachronous metastases was categorized into local treatment, systemic treatment, and best supportive care. Overall survival was estimated using Kaplan-Meier method. RESULTS: Out of 5412 patients, 782 (14%) developed metachronous metastases, of whom 393 (50%) underwent local treatment (LT) with or without systemic therapy, 30% of patients underwent only systemic therapy (ST) and 19% only best supportive care (BSC). The most common metastatic site was the liver (51%) followed by lungs (33%) and peritoneum (22%). LT rates were 69%, 66%, and 44% for liver-only, lung-only and, peritoneal-only metastases respectively. Patients receiving LT and ST were significantly younger than patients receiving LT alone, while patients receiving BSC were significantly older than the other groups (p < 0.001). Patients with liver-only or lung-only metastases had a 3-year OS of 50.2% (43.3-56.7 95% CI) and 61.5% (50.7-70.6 95% CI) respectively. Patients with peritoneal-only disease had a lower 3-year OS, 18.1% (10.1-28.0 95% CI). CONCLUSION: Patients with metastases confined to the liver and lung have the highest rates of local treatment for metachronous metastatic colorectal cancer. The number of patients who underwent local treatment is higher than reported in previous Dutch and international studies.


Subject(s)
Colonic Neoplasms , Colorectal Neoplasms , Liver Neoplasms , Lung Neoplasms , Rectal Neoplasms , Colorectal Neoplasms/pathology , Humans , Liver Neoplasms/secondary , Lung Neoplasms/secondary , Lung Neoplasms/therapy , Netherlands/epidemiology , Prognosis
5.
Colorectal Dis ; 20(2): 134-143, 2018 02.
Article in English | MEDLINE | ID: mdl-28782277

ABSTRACT

AIM: Sacral neuromodulation (SNM) is a minimally invasive therapy for functional constipation (FC) and is most often used to treat adults. Recent studies suggest that SNM may also beneficial in children. However, comparative data regarding preferred age of SNM for FC are lacking. Therefore, long-term results of SNM for FC were compared between children and adults. METHOD: All patients treated with SNM for FC between 2004 and 2015 were evaluated. Outcomes of children (age 10-18 years) were compared with those for adults (≥ 18 years). The primary end-point was a defaecation frequency of three or more times per week, which is consistent with the ROME-III criteria. Secondary outcomes were quality of life (QoL; SF-36) and the Cleveland Clinic Constipation Score. RESULTS: One hundred and eighty patients (45 children, 135 adults) were eligible for SNM. The mean age was 15.8 (children) and 41.4 years (adults). One hundred and twenty-six patients received permanent SNM (38 children, 88 adults). Mean follow-up was 47 months in both groups. Defaecation frequency increased in both groups after SNM compared with baseline. Defaecation frequency in adults was higher than in children. The increased defaecation frequency was maintained during the entire follow-up period in both groups. QoL of children was impaired compared with the Dutch population with regard to bodily pain, general health and vitality. Adults had worse QoL with regard to physical functioning, bodily pain, general health, vitality and social functioning compared with the Dutch population. QoL of children did not differ from adults. CONCLUSION: Sacral neuromodulation (SNM) should be considered in children (< 18 years) with FC. However, the indication of SNM for FC remains debatable considering the limited improvements and high costs.


Subject(s)
Age Factors , Constipation/therapy , Electric Stimulation Therapy/methods , Adolescent , Adult , Child , Constipation/physiopathology , Defecation/physiology , Female , Humans , Male , Quality of Life , Retrospective Studies , Sacrum/innervation , Treatment Outcome
6.
Nat Prod Rep ; 32(6): 841-64, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25891138

ABSTRACT

This review highlights recent innovative synthetic strategies developed for the stereoselective construction of natural complex decalin systems. It offers an insight into various synthetic targets and approaches and provides information for developments within the area of natural products as well as synthetic methodology.


Subject(s)
Alkanes/chemical synthesis , Biological Products/chemical synthesis , Bridged Bicyclo Compounds/chemical synthesis , Naphthalenes/chemical synthesis , Alkanes/chemistry , Biological Products/chemistry , Bridged Bicyclo Compounds/chemistry , Molecular Structure , Naphthalenes/chemistry
7.
Gene Ther ; 17(2): 272-80, 2010 Feb.
Article in English | MEDLINE | ID: mdl-19865181

ABSTRACT

The clinical application of self-inactivating (SIN) retroviral vectors has been hampered by the lack of reliable and efficient vector production technologies. To enable production of SIN gamma-retroviral vectors from stable producer clones, a new PG13-based packaging cell, known as PG368, was developed. Viral vector expression constructs can be reliably inserted at a predefined genomic locus of PG368 packaging cells by an Flp-recombinase-mediated targeted cassette exchange (RMCE) reaction. A new, carefully designed vector-targeting construct, pEMTAR-1, eliminated the co-packaging of the selectable marker gene used for the identification of successful recombination at the predefined genomic locus and thus, improved the safety of the production system. Selected clones produced vector supernatants at consistent titers. The targeted insertion of therapeutically relevant SIN vectors for chronic granulomatous disease and X-linked severe combined immunodeficiency into PG368 cells results in stable titers within the range necessary for clinical application. The production of retroviral SIN vectors from stable clinical-grade producer cells is feasible and will contribute to the safe production and application of SIN gamma-retroviral vectors for clinical trials.


Subject(s)
DNA Nucleotidyltransferases , Gene Transfer Techniques , Genetic Vectors , Retroviridae/genetics , Cell Line , Feasibility Studies , Gene Targeting , Genetic Therapy/methods , Granulomatous Disease, Chronic/therapy , Humans , Severe Combined Immunodeficiency/therapy
8.
J Physiol Pharmacol ; 59 Suppl 6: 401-6, 2008 Dec.
Article in English | MEDLINE | ID: mdl-19218664

ABSTRACT

Many patients with obstructive sleep apnea syndrome (OSAS) receiving continuous positive airway pressure (CPAP) complain of leaky masks or too high pressure during expiration. C-Flex is a breathing mode with a constant CPAP pressure during inspiration and a reduced pressure during expiration. We compared the leakage data between CPAP and C-Flex and their influence on patients' compliance. Thirty patients (22 men, 8 women, aged 55.4 +/- 11.7 yr, BMI 32.0 +/- 7.4 kg/m(2)) with polysomnographically diagnosed OSAS got a CPAP or C-Flex therapy in a randomized double-blind and cross-over design. After 6 weeks, an adjustment to the other mode followed. Leakage data were sampled during all polysomnographic examinations. Twelve patients dropped out of the study (7 after C-Flex, 5 after CPAP), 4 of them gave up CPAP therapy completely (2 after CPAP, 2 after C-Flex). The leakage in CPAP mode was 27.5 +/-11.5 l/min and in C-Flex mode 28.0 +/-10 l/min (ns). The average nightly use in CPAP mode was 350.0 +/- 70.2 min and in C-Flex mode 347.0 +/- 70.8 min (ns). In the final decision of therapy, 9 patients chose C-Flex and 4 patients CPAP (P=0.001). Five patients had no preference regarding the therapy mode. There is no difference in leakage and compliance between CPAP and C-Flex. But significantly more patients decided for a therapy with the C-Flex mode. There must be other unknown factors that influence the decision for the mode of therapy.


Subject(s)
Continuous Positive Airway Pressure/instrumentation , Arousal/physiology , Double-Blind Method , Equipment Failure , Female , Humans , Male , Middle Aged , Oxygen/blood , Oxygen Consumption/physiology , Polysomnography , Sleep Apnea, Obstructive/physiopathology , Sleep Apnea, Obstructive/therapy , Sleep, REM/physiology
9.
Br J Anaesth ; 92(3): 434-7, 2004 Mar.
Article in English | MEDLINE | ID: mdl-14742339

ABSTRACT

We describe the use of transcranial Doppler (TCD) monitoring during laparoscopic resection of an ovarian cyst in a young woman who previously underwent ventriculoperitoneal shunting for hydrocephalus. Shunt function was not altered by pneumoperitoneum, except during transient episodes of high intra-abdominal pressure. The role of TCD monitoring during laparoscopic procedures in patients with cerebrospinal fluid shunt is discussed.


Subject(s)
Laparoscopy , Monitoring, Intraoperative/methods , Ultrasonography, Doppler, Transcranial , Ventriculoperitoneal Shunt , Adult , Female , Humans , Ovarian Cysts/surgery
10.
Proc Natl Acad Sci U S A ; 98(24): 14144-9, 2001 Nov 20.
Article in English | MEDLINE | ID: mdl-11717467

ABSTRACT

Plants possess two well described thioredoxin systems: a cytoplasmic system including several thioredoxins and an NADPH-dependent thioredoxin reductase and a specific chloroplastic system characterized by a ferredoxin-dependent thioredoxin reductase. On the basis of biochemical activities, plants also are supposed to have a mitochondrial thioredoxin system as described in yeast and mammals, but no gene encoding plant mitochondrial thioredoxin or thioredoxin reductase has been identified yet. We report the characterization of a plant thioredoxin system located in mitochondria. Arabidopsis thaliana genome sequencing has revealed numerous thioredoxin genes among which we have identified AtTRX-o1, a gene encoding a thioredoxin with a potential mitochondrial transit peptide. AtTRX-o1 and a second gene, AtTRX-o2, define, on the basis of the sequence and intron positions, a new thioredoxin type up to now specific to plants. We also have characterized AtNTRA, a gene encoding a protein highly similar to the previously described cytosolic NADPH-dependent thioredoxin reductase AtNTRB but with a putative presequence for import into mitochondria. Western blot analysis of A. thaliana subcellular and submitochondrial fractions and in vitro import experiments show that AtTRX-o1 and AtNTRA are targeted to the mitochondrial matrix through their cleavable N-terminal signal. The two proteins truncated to the estimated mature forms were produced in Escherichia coli; AtTRX-o1 efficiently reduces insulin in the presence of DTT and is reduced efficiently by AtNTRA and NADPH. Therefore, the thioredoxin and the NADPH-dependent thioredoxin reductase described here are proposed to constitute a functional plant mitochondrial thioredoxin system.


Subject(s)
Arabidopsis Proteins , Mitochondria/metabolism , Plant Proteins/genetics , Thioredoxin-Disulfide Reductase/genetics , Thioredoxins/genetics , Amino Acid Sequence , Arabidopsis/genetics , Base Sequence , Biological Transport , DNA, Plant , Enzyme Activation , Enzyme Precursors/metabolism , Genes, Plant , Molecular Sequence Data , Peptides/genetics , Peptides/metabolism , Plant Proteins/classification , Plant Proteins/metabolism , Protein Precursors/metabolism , Subcellular Fractions , Thioredoxin h , Thioredoxin-Disulfide Reductase/metabolism , Thioredoxins/classification , Thioredoxins/metabolism
11.
Plant Physiol ; 127(3): 1299-309, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11706208

ABSTRACT

A sequence coding for a peroxiredoxin (Prx) was isolated from a xylem/phloem cDNA library from Populus trichocarpa and subsequently inserted into an expression plasmid yielding the construction pET-Prx. The recombinant protein was produced in Escherichia coli cells and purified to homogeneity with a high yield. The poplar Prx is composed of 162 residues, a property that makes it the shortest plant Prx sequence isolated so far. It was shown that the protein is monomeric and possesses two conserved cysteines (Cys). The Prx degrades hydrogen peroxide and alkyl hydroperoxides in the presence of an exogenous proton donor that can be either thioredoxin or glutaredoxin (Grx). Based on this finding, we propose that the poplar protein represents a new type of Prx that differs from the so-called 2-Cys and 1-Cys Prx, a suggestion supported by the existence of natural fusion sequences constituted of a Prx motif coupled to a Grx motif. The protein was shown to be highly expressed in sieve tubes where thioredoxin h and Grx are also major proteins.


Subject(s)
Oxidoreductases , Peroxidases/metabolism , Proteins/metabolism , Salicaceae/metabolism , Thioredoxins/metabolism , Amino Acid Sequence , Biological Transport, Active , Cloning, Molecular , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression Regulation, Plant , Glutaredoxins , Molecular Sequence Data , Oxidation-Reduction , Peroxidase/metabolism , Peroxidases/genetics , Peroxidases/isolation & purification , Peroxiredoxins , Plant Stems/genetics , Plant Stems/metabolism , Plant Stems/ultrastructure , Protons , Salicaceae/genetics , Salicaceae/ultrastructure , Sequence Alignment , Sulfhydryl Compounds/analysis
12.
Cell Stress Chaperones ; 6(3): 201-8, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11599561

ABSTRACT

The Arabidopsis genome contains at least 18 genes encoding members of the 70-kilodalton heat shock protein (Hsp70) family, 14 in the DnaK subfamily and 4 in the Hsp110/SSE subfamily. While the Hsp70s are highly conserved, a phylogenetic analysis including all members of this family in Arabidopsis and in yeast indicates the homology of Hsp70s in the subgroups, such as those predicted to localize in the same subcellular compartment and those similar to the mammalian Hsp110 and Grp170. Gene structure and genome organization suggest duplication in the origin of some genes. The Arabidopsis hsp70s exhibit distinct expression profiles; representative genes of the subgroups are expressed at relatively high levels during specific developmental stages and under thermal stress.


Subject(s)
Arabidopsis Proteins/genetics , Arabidopsis/genetics , Escherichia coli Proteins , HSP70 Heat-Shock Proteins/genetics , Arabidopsis/physiology , Arabidopsis Proteins/chemistry , Arabidopsis Proteins/metabolism , Chromosome Mapping , Gene Expression Regulation, Plant/physiology , Genes, Plant , Genome, Plant , HSP70 Heat-Shock Proteins/chemistry , HSP70 Heat-Shock Proteins/classification , HSP70 Heat-Shock Proteins/metabolism , Phylogeny , Protein Structure, Tertiary
13.
Plant J ; 25(2): 127-35, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11169189

ABSTRACT

In the chloroplast of higher plants, two types of thioredoxins (TRX), namely TRX m which shows high similarity to prokaryotic thioredoxins and TRX f which is more closely related to eukaryotic thioredoxins, have been found and biochemically characterized, but little is known about their physiological specificity with respect to their target(s). Here, we tested, in vivo, the ability of organelle-specific TRX from Arabidopsis thaliana to compensate for TRX deficiency of a Saccharomyces cerevisiae mutant strain. Seven plant organellar TRX (four of the m type, two of the f type and a newly discovered TRX x of prokaryotic type) were expressed in yeast in a putative mature form. None of these heterologous TRX were able to restore growth on sulphate or methionine sulphoxide of the mutant cells. When we tested their ability to rescue the oxidant-hypersensitive phenotype of the TRX-deficient strain, we found that TRX m and TRX x, but not TRX f, affected the tolerance to oxidative stress induced by either hydrogen peroxide or an alkyl hydroperoxide. Athm1, Athm2, Athm4 and Athx induced hydrogen peroxide tolerance like the endogenous yeast thioredoxins. Unexpectedly, Athm3 had a hypersensitizing effect towards oxidative stress. The presence of functional heterologous TRX was checked in the recombinant clones tested, supporting distinct abilities for organelle-specific plant TRX to compensate for TRX deficiency in yeast. We propose a new function for the prokaryotic-type chloroplastic TRX as an anti-oxidant and provide in vivo evidence for different roles of chloroplastic TRX isoforms.


Subject(s)
Chloroplasts/metabolism , Genetic Complementation Test , Saccharomyces cerevisiae/genetics , Thioredoxins/metabolism , Amino Acid Sequence , Arabidopsis/genetics , Arabidopsis/metabolism , Arabidopsis/ultrastructure , Base Sequence , DNA Primers , Molecular Sequence Data , Mutation , Sequence Homology, Amino Acid , Thioredoxins/chemistry , Thioredoxins/genetics
15.
J Biol Chem ; 275(41): 31641-7, 2000 Oct 13.
Article in English | MEDLINE | ID: mdl-10906327

ABSTRACT

The disruption of the two thioredoxin genes in Saccharomyces cerevisiae leads to a complex phenotype, including the inability to use methionine sulfoxide as sulfur source, modified cell cycle parameters, reduced H(2)O(2) tolerance, and inability to use sulfate as sulfur source. Expression of one of the multiple Arabidopsis thaliana thioredoxins h in this mutant complements only some aspects of the phenotype, depending on the expressed thioredoxin: AtTRX2 or AtTRX3 induce methionine sulfoxide assimilation and restore a normal cell cycle. In addition AtTRX2 also confers growth on sulfate but no H(2)O(2) tolerance. In contrast, AtTRX3 does not confer growth on sulfate but induces H(2)O(2) tolerance. We have constructed hybrid proteins between these two thioredoxins and show that all information necessary for sulfate assimilation is present in the C-terminal part of AtTRX2, whereas some information needed for H(2)O(2) tolerance is located in the N-terminal part of AtTRX3. In addition, mutation of the atypical redox active site WCPPC to the classical site WCGPC restores some growth on sulfate. All these data suggest that the multiple Arabidopsis thioredoxins h originate from a totipotent ancestor with all the determinants necessary for interaction with the different thioredoxin target proteins. After duplications each member evolved by losing or masking some of the determinants.


Subject(s)
Arabidopsis/enzymology , Saccharomyces cerevisiae/enzymology , Thioredoxins/metabolism , Amino Acid Sequence , Amino Acid Substitution/genetics , Arabidopsis/genetics , Binding Sites , Blotting, Western , Cell Cycle , Evolution, Molecular , Genetic Complementation Test , Hydrogen Peroxide/pharmacology , Methionine/analogs & derivatives , Methionine/metabolism , Models, Molecular , Molecular Sequence Data , Mutation , Oxidation-Reduction , Phenotype , Protein Conformation , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Saccharomyces cerevisiae/cytology , Saccharomyces cerevisiae/drug effects , Saccharomyces cerevisiae/genetics , Sequence Alignment , Substrate Specificity , Sulfates/metabolism , Thioredoxins/chemistry , Thioredoxins/genetics
16.
J Mol Evol ; 50(2): 116-22, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10684345

ABSTRACT

Glutamine synthetase type I (GSI) genes have previously been described only in prokaryotes except that the fungus Emericella nidulans contains a gene (fluG) which encodes a protein with a large N-terminal domain linked to a C-terminal GSI-like domain. Eukaryotes generally contain the type II (GSII) genes which have been shown to occur also in some prokaryotes. The question of whether GSI and GSII genes are orthologues or paralogues remains a point of controversy. In this article we show that GSI-like genes are widespread in higher plants and have characterized one of the genes from the legume Medicago truncatula. This gene is part of a small gene family and is expressed in many organs of the plant. It encodes a protein similar in size and with between 36 and 46% amino acid sequence similarity to prokaryotic GS proteins used in the analyses, whereas it is larger and with less than 25% similarity to GSII proteins, including those from the same plant species. Phylogenetic analyses suggest that this protein is most similar to putative proteins encoded by expressed sequence tags of other higher plant species (including dicots and a monocot) and forms a cluster with FluG as the most divergent of the GSI sequences. The discovery of GSI-like genes in higher plants supports the paralogous evolution of GSI and GSII genes, which has implications for the use of GS in molecular studies on evolution.


Subject(s)
Evolution, Molecular , Glutamate-Ammonia Ligase/genetics , Phylogeny , Amino Acid Sequence , Cloning, Molecular , Genes, Plant , Medicago sativa/genetics , Molecular Sequence Data , Multigene Family , Plant Structures/enzymology , Sequence Analysis, DNA
17.
Percept Psychophys ; 61(8): 1555-63, 1999 Nov.
Article in English | MEDLINE | ID: mdl-10598469

ABSTRACT

The present study investigates the distortions in the perception of artificial stereoscopic displays seen from an inappropriate distance and/or orientation. Stereoscopic displays represent 3-D information correctly, provided they are seen from the correct station point. The viewing point may differ from the correct station point in its distance or in its orientation to the screen. These differences lead to distortions that can be predicted mathematically. However, the perceptual function may be different from the predictions, since people may possibly compensate for the distortions. To test the degree of this compensation, participants saw anaglyphic stereoscopic stimuli that showed angles in the horizontal plane, and their perception of the configuration was tested for various orientations and distances. The estimates were compared with the values predicted from the mathematical functions, and participants' virtual positions were reconstructed via nonlinear regressions. The analyses revealed a moderate compensation for viewing orientations and a systematically overestimation of the viewing distances. These results indicate that people compensate partially for distortions in stereopsis, given that the relevant information is available.


Subject(s)
Depth Perception , Orientation , Vision Disparity , Adult , Color Perception , Distance Perception , Female , Humans , Male , Optical Illusions , Perceptual Distortion , Psychophysics
18.
Gene ; 240(2): 307-16, 1999 Nov 29.
Article in English | MEDLINE | ID: mdl-10580150

ABSTRACT

Screening of cDNA libraries at low stringency and complete sequencing of EST clones with homology to thioredoxins allowed us to characterize five new prokaryotic type Arabidopsis thaliana thioredoxins. All present N-terminal extensions with characteristics of transit peptides. Four are clustered in a phylogenetic tree with the chloroplastic thioredoxin m from red and green algae and higher plants, and their transit peptides have typical characteristics of chloroplastic transit peptides. One is clearly divergent and defines a new prokaryotic thioredoxin type that we have named thioredoxin x. Its transit peptide sequence presents characteristics of both chloroplastic and mitochondrial transit peptides. The five corresponding genes are expressed at different levels, but mostly in green tissues and in in-vitro cultivated cells.


Subject(s)
Arabidopsis/genetics , Genome, Plant , Thioredoxins/genetics , Amino Acid Sequence , Arabidopsis/chemistry , Blotting, Southern , DNA, Complementary/chemistry , DNA, Complementary/genetics , DNA, Plant/analysis , DNA, Plant/genetics , Databases, Factual , Expressed Sequence Tags , Gene Expression Regulation, Plant , Gene Library , Molecular Sequence Data , Phylogeny , Prokaryotic Cells/metabolism , Protein Isoforms/genetics , RNA, Plant/genetics , RNA, Plant/metabolism , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Tissue Distribution
19.
Trends Plant Sci ; 4(10): 388-394, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10498962

ABSTRACT

Thioredoxins and glutaredoxins are ubiquitous proteins that reduce disulphide bridges of oxidized target proteins in vitro. In contrast to the situations in other organisms, phylogenic analysis has indicated that plant thioredoxins and glutaredoxins are present as multigenic families, and that thioredoxins have several subclasses. Thioredoxins and glutaredoxins are probably involved in similar physiological events - the major challenge is to identify their specific targets and establish the function of these proteins in vivo.

20.
J Biol Chem ; 274(28): 19714-22, 1999 Jul 09.
Article in English | MEDLINE | ID: mdl-10391912

ABSTRACT

Disruption of the two thioredoxin genes in yeast dramatically affects cell viability and growth. Expression of Arabidopsis thioredoxin AtTRX3 in the Saccharomyces thioredoxin Delta strain EMY63 restores a wild-type cell cycle, the ability to grow on methionine sulfoxide, and H2O2 tolerance. In order to isolate thioredoxin targets related to these phenotypes, we prepared a C35S (Escherichia coli numbering) thioredoxin mutant to stabilize the intermediate disulfide bridged complex and we added a polyhistidine N-terminal extension in order to purify the complex rapidly. Expression of this mutant thioredoxin in the wild-type yeast induces a reduced tolerance to H2O2, but only limited change in the cell cycle and no change in methionine sulfoxide utilization. Expression in the Delta thioredoxin strain EMY63 allowed us to isolate a complex of the thioredoxin with YLR109, an abundant yeast protein related to PMP20, a peroxisomal protein of Candida. No function has so far been attributed to this protein or to the other numerous homologues described in plants, animals, fungi, and prokaryotes. On the basis of the complementation and of low similarity with peroxiredoxins, we produced YLR109 and one of its Arabidopsis homologues in E. coli to test their peroxiredoxins activity. We demonstrate that both recombinant proteins present a thioredoxin-dependent peroxidase activity in vitro. The possible functions of this new peroxiredoxin family are discussed.


Subject(s)
Arabidopsis Proteins/genetics , Peroxidases/genetics , Thioredoxins/genetics , Amino Acid Sequence , Arabidopsis/enzymology , Arabidopsis Proteins/chemistry , DNA/chemistry , Dithiothreitol/pharmacology , Escherichia coli/enzymology , Flow Cytometry , Fungal Proteins/chemistry , Gene Expression Regulation , Hydrogen Peroxide/metabolism , Kinetics , Molecular Sequence Data , Mutagenesis , Peroxidases/metabolism , Peroxiredoxins , Phylogeny , Reactive Oxygen Species/metabolism , Recombinant Proteins/genetics , Saccharomyces cerevisiae/enzymology , Sequence Alignment , Thioredoxin h , Thioredoxins/chemistry
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