Informing Wildlife Corridor Creation through Population Genetics of an Arboreal Marsupial in a Fragmented Landscape.

Habitat loss and fragmentation contribute significantly to the decline of arboreal mammal populations. As populations become fragmented and isolated, a reduction in gene flow can result in a loss of genetic diversity and have an overall impact upon long-term persistence. Creating wildlife corridors can mitigate such effects by increasing the movement and dispersal of animals, thus acting to reduce population isolation. To evaluate the success of a corridor, a before-after experimental research framework can be used. Here, we report the genetic diversity and structure of sugar glider (Petaurus breviceps) sampling locations within a fragmented landscape prior to the implementation of a wildlife corridor. This study used 5999 genome-wide SNPs from 94 sugar gliders caught from 8 locations in a fragmented landscape in south-eastern New South Wales, Australia. Overall genetic structure was limited, and gene flow was detected across the landscape. Our findings indicate that the study area contains one large population. A major highway dissecting the landscape did not act as a significant barrier to dispersal, though this may be because of its relatively new presence in the landscape (completed in 2018). Future studies may yet indicate its long-term impact as a barrier to gene flow. Future work should aim to repeat the methods of this study to examine the medium-to-long-term impacts of the wildlife corridor on sugar gliders, as well as examine the genetic structure of other native, specialist species in the landscape.

Conservation genomics of an endangered arboreal mammal following the 2019-2020 Australian megafire.

The impacts of a changing climate threaten species, populations and ecosystems. Despite these significant and large-scale impacts on threatened species, many remain understudied and have little to no genetic information available. The greater glider, Petauroides volans, is an endangered species highly sensitive to the predicted changes in temperature under a changing climate and was recently severely impacted by a megafire natural disaster (85% estimated population loss). Baseline genetic data is essential for conservation management and for detecting detrimental changes in fire-effected populations. We collected genetic samples within 2 years post the 2019-2020 catastrophic Australian bushfires to examine adaptive potential, baseline genetic diversity and population structure, across their southern range in the state of New South Wales. Population genomic analyses were conducted using 8493 genome-wide SNPs for 86 greater glider individuals across 14 geographic locations. Substantial genetic structure was detected across locations, with low genetic diversity and effective population sizes observed in isolated areas. Additionally, we found signals of putative adaptation in response to temperature in greater gliders using a genotype-environment association analysis. These findings have important implications for the management of greater glider populations by identifying at-risk populations and identifying adaptive potential. We demonstrate the importance of baseline genetic information for endangered species as a practical approach to conservation. This is particularly important given the threat that changes in temperatures and megafire events, as predicted under a changing climate, poses for this species.

Estimating the density of small mammals using the selfie trap is an effective camera trapping method.

Camera trapping to study wildlife allows for data collection, without the need to capture animals. Traditionally, camera traps have been used to target larger terrestrial mammal species, though recently novel methods and adjustments in procedures have meant camera traps can be used to study small mammals. The selfie trap (a camera trapping method) may present robust sampling and ecological study of small mammals. This study aimed to evaluate the selfie trap method in terms of its ability to detect species and estimate population density. To address this aim, standard small mammal live trapping was undertaken, immediately followed by camera trapping using the selfie trap. Both methods were set to target the arboreal sugar glider (Petaurus breviceps) and semi-arboreal brown antechinus (Antechinus stuartii). The more ground-dwelling bush rat (Rattus fuscipes) was also live trapped and recorded on camera. Across four survey areas, the probability of detection for each of the three species was higher for selfie traps than for live trapping. Spatially explicit capture-recapture models showed that selfie traps were superior at estimating density for brown antechinus and sugar gliders, when compared to simulated live trapping data. Hit rates (number of videos per various time intervals) were correlated with abundance. When correlating various hit rate intervals with abundance, the use of 10-min hit rate was best for predicting sugar glider abundance (R2 = 0.94). The abundance of brown antechinus was estimated from selfie traps using a 24-h hit rate as a predictor (R2 = 0.85). For sugar gliders, the selfie trap can replace live trapping as individuals can be identified through their unique facial stripes and natural ear scars, and thus used in capture-recapture analysis. This method may be useful for monitoring the abundance of other small mammal species that can also be individually recognized from photographs. Supplementary Information: The online version contains supplementary material available at 10.1007/s13364-022-00643-5.

The Use of Selfie Camera Traps to Estimate Home Range and Movement Patterns of Small Mammals in a Fragmented Landscape.

The use of camera traps to track individual mammals to estimate home range and movement patterns, has not been previously applied to small mammal species. Our aim was to evaluate the use of camera trapping, using the selfie trap method, to record movements of small mammals within and between fragments of habitat. In a fragmented landscape, 164 cameras were set up across four survey areas, with cameras left to record continuously for 28 nights. Live trapping was performed prior to ear mark animals to facilitate individual identification on camera. Four small mammal species (sugar glider; Petaurus breviceps; brown antechinus; Antechinus stuartii, bush rat; Rattus fuscipes, and brown rat; Rattus norvigecus) were recorded on camera (N = 284 individuals). The maximum distance travelled by an individual sugar glider was 14.66 km, antechinus 4.24 km; bush rat 1.90 km and brown rat 1.28 km. Movements of both female and male sugar gliders in linear fragments were recorded at much higher rates than in larger patches of forest sampled in grids. Short term core homes ranges (50% KDE) of 34 sugar gliders ranged from 0.3 ha to 4.2 ha. Sugar glider core home ranges were on average 1.2 ha (±0.17) for females and 2.4 ha (±0.28) for males. The selfie trap is an efficient camera trapping method for estimating home ranges and movements due to its ability to obtain high recapture rates for multiple species and individuals. In our study landscape, linear strips of habitat were readily utilised by all small mammals, highlighting their importance as wildlife corridors in a fragmented landscape.

Population Genetics of the Invasive Red Fox, Vulpes vulpes, in South-Eastern Australia.

The use of genetic information in conservation biology has become more widespread with genetic information more readily available for non-model organisms. It has also been recognized that genetic information from invasive species can inform their management and control. The red fox poses a significant threat to Australian native fauna and the agricultural industry. Despite this, there are few recently published studies investigating the population genetics of foxes in Australia. This study investigated the population genetics of 94 foxes across the Illawarra and Shoalhaven regions of New South Wales, Australia. Diversity Array sequencing technology was used to genotype a large number of single nucleotide polymorphisms (N = 33,375). Moderate genetic diversity and relatedness were observed across the foxes sampled. Low to moderate levels of inbreeding, high-levels of identity-by-state values, as well as high identity-by-descent values were also found. There was limited evidence for population genetic structure among the foxes across the landscape sampled, supporting the presence of a single population across the study area. This indicates that there may be no barriers hindering fox dispersal across the landscape.

Modern Techniques in Colorado Potato Beetle (Leptinotarsa decemlineata Say) Control and Resistance Management: History Review and Future Perspectives.

Colorado potato beetle, CPB (Leptinotarsa decemlineata Say), is one of the most important pests of the potato globally. Larvae and adults can cause complete defoliation of potato plant leaves and can lead to a large yield loss. The insect has been successfully suppressed by insecticides; however, over time, has developed resistance to insecticides from various chemical groups, and its once successful control has diminished. The number of available active chemical control substances is decreasing with the process of testing, and registering new products on the market are time-consuming and expensive, with the possibility of resistance ever present. All of these concerns have led to the search for new methods to control CPB and efficient tools to assist with the detection of resistant variants and monitoring of resistant populations. Current strategies that may aid in slowing resistance include gene silencing by RNA interference (RNAi). RNAi, besides providing an efficient tool for gene functional studies, represents a safe, efficient, and eco-friendly strategy for CPB control. Genetically modified (GM) crops that produce the toxins of Bacillus thuringiensis (Bt) have many advantages over agro-technical, mechanical, biological, and chemical measures. However, pest resistance that may occur and public acceptance of GM modified food crops are the main problems associated with Bt crops. Recent developments in the speed, cost, and accuracy of next generation sequencing are revolutionizing the discovery of single nucleotide polymorphisms (SNPs) and field of population genomics. There is a need for effective resistance monitoring programs that are capable of the early detection of resistance and successful implementation of integrated resistance management (IRM). The main focus of this review is on new technologies for CPB control (RNAi) and tools (SNPs) for detection of resistant CPB populations.

Wildlife crime in Croatia.

This paper presents data about wildlife crime in Croatia. The data were gathered from qualitative interviews and personal communications with individuals involved in wildlife crime-related research, and/or prevention and detection work or recreation. The results show that poaching is a recognized problem. There is a variety of commonly poached mammals, fish and bird species. We conclude that evidence about wildlife crime should be collated drawing on forensic techniques.

Durum Wheat Cultivars Express Different Level of Resistance to Granary Weevil, Sitophilus granarius (Coleoptera; Curculionidae) Infestation.

The granary weevil, Sitophilus granarius Linnaeus 1875, is a primary pest of stored grains worldwide. Feeding damage and progeny production of S. granarius was estimated to identify the levels of resistance of the insect on different durum wheat cultivars. Insect attack on four different durum wheat cultivars was investigated over a period of 20 weeks. Durum wheats were artificially infected with 20 individuals of S. granarius. Every two weeks the sample weight, hectoliter weight, moisture and the number of live weevils, including their number of progenies, were recorded. Overall findings revealed different levels of resistance of different durum wheat cultivars to S. granarius infestation. The Primadur cultivar had the highest resistance, followed by the Marco Aurelio and Cesare cultivars followed finally by the Tito Flavio cultivar which was highly susceptible to S. granarius. For all cultivars, apart from Primadur, S. granarius metabolism increased humidity and temperature, leading to grain degradation and resulting in the potential complete loss of market value if under field conditions. Evidently, durum wheat characteristics affect the life cycle of S. granarius, primarily their progeny, and thus the damage they undertake to the wheat itself. These findings are important because they enable the strategic selection of wheat cultivars that can be stored for a longer time period, while more sensitive wheat cultivars can be selected for shorter storage time and thus faster delivery to market.

Pest Management Challenges and Control Practices in Codling Moth: A Review.

The codling moth, Cydia pomonella L., is a serious insect pest in pome fruit production worldwide with a preference for apple. The pest is known for having developed resistance to several chemical groups of insecticides, making its control difficult. The control and management of the codling moth is often hindered by a lack of understanding about its biology and ecology, including aspects of its population genetics. This review summarizes the information about the origin and biology of the codling moth, describes the mechanisms of resistance in this pest, and provides an overview of current research of resistant pest populations and genetic research both in Europe and globally. The main focus of this review is on non-pesticide control measures and anti-resistance strategies which help to reduce the number of chemical pesticides used and their residues on food and the local environment. Regular monitoring for insecticide resistance is essential for proactive management to mitigate potential insecticide resistance. Here we describe techniques for the detection of resistant variants and possibilities for monitoring resistance populations. Also, we present our present work on developing new methods to maintain effective control using appropriate integrated resistance management (IRM) strategies for this economically important perennial pest.

Two Decades of Invasive Western Corn Rootworm Population Monitoring in Croatia.

Western corn rootworm (WCR) is the worst pest of maize in the United States, and since its spread through Europe, WCR is now recognized as the most serious pest affecting maize production. After the beetle's first detection in Serbia in 1992, neighboring countries such as Croatia have established a national monitoring program. For more than two decades WCR adult population abundance and variability was monitored. With traditional density monitoring, more recent genetic monitoring, and the newest morphometric monitoring of WCR populations, Croatia possesses a great deal of knowledge about the beetle's invasion process over time and space. Croatia's position in Europe is unique as no other European nation has demonstrated such a detailed and complete understanding of an invasive insect. The combined use of traditional monitoring (attractant cards), which can be effectively used to predict population abundance, and modern monitoring procedures, such as population genetics and geometric morphometrics, has been effectively used to estimate inter- and intra-population variation. The combined application of traditional and modern monitoring techniques will enable more efficient control and management of WCR across Europe. This review summarizes the research on WCR in Croatia from when it was first detected in 1992 until 2018. An outline of future research needs is provided.

Monitoring techniques of the western corn rootworm are the precursor to effective IPM strategies.

BACKGROUND: The western corn rootworm (WCR) is economically the most important pest of maize in Croatia. To predict WCR adult population abundance and variability, traditional, genetic and morphometric monitoring of populations was conducted over time through each phase of the WCR invasion process in Croatia. RESULTS: Through traditional monitoring it was shown that WCR established their current population and reached economic densities after 14 years persisting in the study area. Regression-tree-based modelling showed that the best predictor of WCR adult abundance was the total amount of rainfall. Genetic monitoring indicated that genetic differentiation increased over time at the intrapopulation level, and morphometric monitoring indicated that wing morphotypes varied according to edaphic landscape changes. CONCLUSION: Traditional population metric surveys are important in WCR integrated pest management (IPM), as such surveys can be effectively used to predict population abundances. Novel-use monitoring techniques such as genetics and geometric morphometrics can be used to provide valuable information on variation within and among populations. The monitoring techniques presented herein provide sound data to assist in the understanding of both WCR ecology and population genetics and may provide more information than that currently available using traditional techniques (e.g. sticky traps), and as such these additional techniques should be written into IPM for WCR.

The Temporal and Spatial Invasion Genetics of the Western Corn Rootworm (Coleoptera: Chrysomelidae) in Southern Europe.

This study describes the genetics of the western corn rootworm (WCR), Diabrotica virgifera virgifera LeConte in southern Europe during the introduction (1996-2001) and establishment/spread (2002-2011) phases of its invasion. The Diabrotica microsatellite core-set was used to perform traditional population genetics analyses. Our results indicated that during the introduction phase genetic diversity and population genetic structure were lower overall as compared to the establishment/spread phase. Unusually high genetic differentiation was found between the Italy and southern Europe comparisons, including high differentiation between Italian populations separated by a short distance during the establishment/spread phase. STRUCTURE analysis revealed two genetic clusters during the introduction phase and two genetic clusters during the establishment/spread phase. However, bottlenecked populations were only detected during the invasion phase. A small but significant isolation by distance effect was noted in both phases. Serbia was the geographic source of WCR to Croatia and Hungary in the introduction phase, while the United States of America was the possible source of WCR to Italy in 2001. These introductory populations were the subsequent source of individuals sampled during the establishment/spread phase. Repeated introductions and admixture events in southern Europe may have resulted in genetically diverse WCR populations that have attained 83% of all known alleles worldwide.

Arsenoriboside degradation in marine systems: the use of bacteria culture incubation experiments as model systems.

Arsenoribosides (as glycerol; phosphate; sulfate and sulfonate) persisted in all bacteria-inoculated cultures irrespective of the source of bacteria (seawater, macro-algae surface) or the culture media used (DIFCO Marine Broth 2216 or novel blended Hormosira banksii tissue-based). This is unlike observations from traditional macro-algae tissue decomposition studies or in nature. In addition known arsenoriboside degradation products such as dimethylarsenoethanol (DMAE), dimethylarsenate (DMA), methylarsenate (MA) and arsenate - As(V) were not detected in any cultures. Consequently, the use of bacterial culture incubation experiments to explain the fate of arsenoribosides in marine systems appears limited as the processes governing arsenoriboside degradation in these experiments appear to be different to those in macro-algae tissue decomposition studies or in nature.

Thermogenesis in decomposing carcasses.

It is of fundamental importance in forensic entomology that the factors controlling carcass temperatures during decomposition are thoroughly understood. The thermal environment to which fly larvae are exposed is the primary influence on their growth rate, and hence affects any estimate of minimum time since death using such specimens in homicide investigations. To date, much of the entomological research on maggot masses has focused on their elevation of carcass temperatures, with very little focus on the bacteria associated with larval activity. The aim of this study was to investigate the heat associated with decay and the types of bacteria present during the decomposition of a carcass, both in the presence and in the absence of maggots. Three treatments were imposed: fresh, frozen and maggot-infested, each consisting of five replicate pig carcasses. Temperature measurements and bacterial swabs were taken from the gastro-intestinal region of each pig and temperatures and bacterial communities compared between treatments. All carcasses reached average maximum temperatures above 32 °C in a temperature controlled room set at 23 °C. Treatment had no statistically significant effect on the temperatures recorded in each carcass but did significantly affect the community structure of the bacteria. However, bacterial community structure varied across time. This study suggests that bacterial metabolism plays a significant role in carcass thermogenesis, and that maggot masses, while contributing to localised heating within the carcass, may have less of a role in elevating carcass temperatures than previously assumed.