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1.
JCI Insight ; 4(3)2019 Feb 07.
Article in English | MEDLINE | ID: mdl-30728332

ABSTRACT

Spine implant infections portend disastrous outcomes, as diagnosis is challenging and surgical eradication is at odds with mechanical spinal stability. Current imaging modalities can detect anatomical alterations and anomalies but cannot differentiate between infection and aseptic loosening, diagnose specific pathogens, or delineate the extent of an infection. Herein, a fully human monoclonal antibody 1D9, recognizing the immunodominant staphylococcal antigen A on the surface of Staphylococcus aureus, was assessed as a nuclear and fluorescent imaging probe in a preclinical model of S. aureus spinal implant infection, utilizing bioluminescently labeled bacteria to confirm the specificity and sensitivity of this targeting. Postoperative mice were administered 1D9 probe dual labeled with 89-zirconium (89Zr) and a near infrared dye (NIR680) (89Zr-NIR680-1D9), and PET-CT and in vivo fluorescence and bioluminescence imaging were performed. The 89Zr-NIR680-1D9 probe accurately diagnosed both acute and subacute implant infection and permitted fluorescent image-guided surgery for selective debridement of infected tissue. Therefore, a single probe could noninvasively diagnose an infection and facilitate image-guided surgery to improve the clinical management of implant infections.

2.
BMC Struct Biol ; 16(1): 13, 2016 08 31.
Article in English | MEDLINE | ID: mdl-27578274

ABSTRACT

BACKGROUND: Diversity-generating retroelements (DGRs) provide organisms with a unique means for adaptation to a dynamic environment through massive protein sequence variation. The potential scope of this variation exceeds that of the vertebrate adaptive immune system. DGRs were known to exist only in viruses and bacteria until their recent discovery in archaea belonging to the 'microbial dark matter', specifically in organisms closely related to Nanoarchaeota. However, Nanoarchaeota DGR variable proteins were unassignable to known protein folds and apparently unrelated to characterized DGR variable proteins. RESULTS: To address the issue of how Nanoarchaeota DGR variable proteins accommodate massive sequence variation, we determined the 2.52 Å resolution limit crystal structure of one such protein, AvpA, which revealed a C-type lectin (CLec)-fold that organizes a putative ligand-binding site that is capable of accommodating 10(13) sequences. This fold is surprisingly reminiscent of the CLec-folds of viral and bacterial DGR variable protein, but differs sufficiently to define a new CLec-fold subclass, which is consistent with early divergence between bacterial and archaeal DGRs. The structure also enabled identification of a group of AvpA-like proteins in multiple putative DGRs from uncultivated archaea. These variable proteins may aid Nanoarchaeota and these uncultivated archaea in symbiotic relationships. CONCLUSIONS: Our results have uncovered the widespread conservation of the CLec-fold in viruses, bacteria, and archaea for accommodating massive sequence variation. In addition, to our knowledge, this is the first report of an archaeal CLec-fold protein.


Subject(s)
Archaea/genetics , Archaeal Proteins/chemistry , Lectins, C-Type/chemistry , Retroelements/genetics , Archaeal Proteins/genetics , Archaeal Proteins/metabolism , Crystallography, X-Ray , Lectins, C-Type/genetics , Lectins, C-Type/metabolism , Molecular Dynamics Simulation , Protein Structure, Secondary , Protein Structure, Tertiary , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification
3.
Structure ; 21(2): 266-76, 2013 Feb 05.
Article in English | MEDLINE | ID: mdl-23273427

ABSTRACT

Diversity-generating retroelements (DGRs) are the only known source of massive protein sequence variation in prokaryotes. These elements transfer coding information from a template region (TR) through an RNA intermediate to a protein-encoding variable region. This retrohoming process is accompanied by unique adenine-specific mutagenesis and, in the prototypical BPP-1 DGR, requires a reverse transcriptase (bRT) and an accessory variability determinant (bAvd) protein. To understand the role of bAvd, we determined its 2.69 Å resolution structure, which revealed a highly positively charged pentameric barrel. In accordance with its charge, bAvd bound both DNA and RNA, albeit without a discernable sequence preference. We found that the coding sequence of bAvd functioned as part of TR but identified means to mutate bAvd without affecting TR. This mutational analysis revealed a strict correspondence between retrohoming and interaction of bAvd with bRT, suggesting that the bRT-bAvd complex is important for DGR retrohoming.


Subject(s)
Bacteriophages/enzymology , Bordetella/virology , RNA-Directed DNA Polymerase/chemistry , Retroelements , Viral Proteins/chemistry , Amino Acid Substitution , Crystallography, X-Ray , DNA, Single-Stranded/chemistry , Models, Molecular , Mutagenesis, Site-Directed , Protein Binding , Protein Structure, Quaternary , Protein Structure, Secondary , RNA/chemistry , Viral Proteins/genetics
7.
Anal Chem ; 83(4): 1321-7, 2011 Feb 15.
Article in English | MEDLINE | ID: mdl-21247066

ABSTRACT

It is difficult to achieve controlled cutting of elastic, mechanically fragile, and rapidly resealing mammalian cell membranes. Here, we report a photothermal nanoblade that utilizes a metallic nanostructure to harvest short laser pulse energy and convert it into a highly localized explosive vapor bubble, which rapidly punctures a lightly contacting cell membrane via high-speed fluidic flows and induced transient shear stress. The cavitation bubble pattern is controlled by the metallic structure configuration and laser pulse duration and energy. Integration of the metallic nanostructure with a micropipet, the nanoblade generates a micrometer-sized membrane access port for delivering highly concentrated cargo (5 × 10(8) live bacteria/mL) with high efficiency (46%) and cell viability (>90%) into mammalian cells. Additional biologic and inanimate cargo over 3-orders of magnitude in size including DNA, RNA, 200 nm polystyrene beads, to 2 µm bacteria have also been delivered into multiple mammalian cell types. Overall, the photothermal nanoblade is a new approach for delivering difficult cargo into mammalian cells.


Subject(s)
Light , Metal Nanoparticles/chemistry , Temperature , Biological Transport/radiation effects , Burkholderia/metabolism , Cell Line , Cell Membrane/metabolism , Cell Membrane/radiation effects , Cell Survival , Fibroblasts/cytology , Fibroblasts/metabolism , Glass/chemistry , Humans , Optical Phenomena , RNA/metabolism , Reproducibility of Results , Time Factors , Titanium/chemistry
8.
Trends Microbiol ; 13(12): 559-60, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16223585

ABSTRACT

Bordetella pertussis is a strictly human pathogen. Experimental infection of other animals can occur with large inoculating doses; rat, mice and primate models have been used to study pathogenesis and immunity. Recently, it was shown that newborn piglets are susceptible to B. pertussis. Lung pathophysiology of infected piglets was similar to that of human infants that develop bronchopneumonia. Piglets and infants are anatomically similar and maternal antibodies are transferred and secreted by a similar mechanism. This model could be valuable for studying the roles of passively and actively acquired immunity against B. pertussis.


Subject(s)
Bordetella pertussis/immunology , Bordetella pertussis/pathogenicity , Disease Models, Animal , Swine , Whooping Cough/immunology , Whooping Cough/microbiology , Animals
9.
J Immunol ; 175(3): 1983-90, 2005 Aug 01.
Article in English | MEDLINE | ID: mdl-16034143

ABSTRACT

Activation of innate immune cells through TLR triggers immunomodulating events that enhance cell-mediated immunity, raising the possibility that ligands to these receptors might act as adjuvants in conjunction with T cell activating vaccines. In this report, topical imiquimod, a synthetic TLR7 agonist, significantly enhanced the protective antitumor effects of a live, recombinant listeria vaccine against murine melanoma. This tumor protective effect was not dependent on direct application to the tumor and was associated with an increase in tumor-associated and splenic dendritic cells. Additionally, the combination of imiquimod treatment with prior vaccination led to development of localized vitiligo. These findings indicate that activation of the innate immune system with TLR ligands stimulates dendritic cell activity resulting in a bypass of peripheral tolerance and enhanced antitumor activity. The results of these studies have broad implications for future designs of immunotherapeutic vaccines against tumors and the treatment of metastatic melanoma.


Subject(s)
Adjuvants, Immunologic/administration & dosage , Aminoquinolines/administration & dosage , Bacterial Vaccines/immunology , Cancer Vaccines/immunology , Listeria monocytogenes/immunology , Melanoma, Experimental/prevention & control , Membrane Glycoproteins/agonists , Receptors, Cell Surface/agonists , Adjuvants, Immunologic/therapeutic use , Administration, Topical , Aminoquinolines/therapeutic use , Animals , Bacterial Vaccines/administration & dosage , Bacterial Vaccines/genetics , Cancer Vaccines/administration & dosage , Cancer Vaccines/genetics , Drug Synergism , Female , Imiquimod , Injections, Subcutaneous , Intramolecular Oxidoreductases/biosynthesis , Intramolecular Oxidoreductases/genetics , Listeria monocytogenes/genetics , Melanoma, Experimental/immunology , Mice , Mice, Inbred C57BL , Neoplasm Transplantation , Toll-Like Receptor 7 , Vaccines, Synthetic/administration & dosage , Vaccines, Synthetic/immunology , Vaccines, Synthetic/therapeutic use
10.
Cell ; 119(2): 299-309, 2004 Oct 15.
Article in English | MEDLINE | ID: mdl-15479645

ABSTRACT

The liver X receptors (LXRs) are nuclear receptors with established roles in the regulation of lipid metabolism. We now show that LXR signaling not only regulates macrophage cholesterol metabolism but also impacts antimicrobial responses. Mice lacking LXRs are highly susceptible to infection with the intracellular bacteria Listeria monocytogenes (LM). Bone marrow transplant studies point to altered macrophage function as the major determinant of susceptibility. LXR-null macrophages undergo accelerated apoptosis when challenged with LM and exhibit defective bacterial clearance in vivo. These defects result, at least in part, from loss of regulation of the antiapoptotic factor SPalpha, a direct target for regulation by LXRalpha. Expression of LXRalpha or SPalpha in macrophages inhibits apoptosis in the setting of LM infection. Our results demonstrate that LXR-dependent gene expression plays an unexpected role in innate immunity and suggest that common nuclear receptor pathways mediate macrophage responses to modified lipoproteins and intracellular pathogens.


Subject(s)
Cholesterol/metabolism , Gene Expression Regulation , Immunity, Innate/physiology , Macrophages/immunology , Receptors, Cytoplasmic and Nuclear/metabolism , Signal Transduction/physiology , Animals , Bone Marrow Transplantation , Cell Survival , Cells, Cultured , DNA-Binding Proteins , Gene Expression Profiling , Listeria monocytogenes/metabolism , Listeriosis/metabolism , Liver X Receptors , Macrophages/cytology , Macrophages/microbiology , Macrophages/physiology , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Oligonucleotide Array Sequence Analysis , Orphan Nuclear Receptors , Protein Isoforms/genetics , Protein Isoforms/metabolism , Receptors, Cytoplasmic and Nuclear/genetics , Receptors, Immunologic/genetics , Receptors, Immunologic/metabolism , Survival Rate
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