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1.
J Eur Acad Dermatol Venereol ; 25(3): 317-27, 2011 Mar.
Article in English | MEDLINE | ID: mdl-20642475

ABSTRACT

BACKGROUND: Hyaluronan (HA) is a major component of the extracellular matrix (ECM) with increased synthesis during tissue repair. Tumour necrosis factor-stimulated gene-6 (TSG-6) is known to catalyze the covalent transfer of heavy chains (HC1 and HC2) from inter-α-inhibitor (IαI) onto HA, and resultant HC•HA complexes have been implicated in physiological and pathological processes related to remodelling and inflammation. OBJECTIVE: The aims of this study were to determine the expression of HA, TSG-6 and the IαI polypeptides in unscarred skin, normal scars and keloid scars. METHODS: Formalin-fixed paraffin-embedded sections of unscarred skin, normal scars and keloid scars were prepared from patient samples collected during scar revision surgery. Haematoxylin and eosin, as well as immunofluorescent staining for HA, TSG-6 and the three polypeptide chains of IαI (i.e. HC1, HC2 and bikunin) were performed. RESULTS: All skin types stained positive for TSG-6, HC1, HC2 and bikunin, associated with keratinocytes, fibroblasts and skin appendages all in close proximity to HA. Keloid lesions showed altered HA organization patterns compared with unscarred skin and normal scars. TSG-6 staining was significantly more intense in the epidermis compared with the dermis of all sample types. There was a significant reduction in TSG-6 levels within keloid lesions compared with the dermis of unscarred skin (P=0.017). CONCLUSION: TSG-6 is expressed in unscarred skin, where its close association with HA and IαI could give rise to TSG-6-mediated HC•HA formation within this tissue. A reduction in the beneficial effects of TSG-6, caused by diminished protein levels in keloid lesions, could contribute to this abnormal scarring process.


Subject(s)
Cell Adhesion Molecules/metabolism , Cicatrix/metabolism , Hyaluronic Acid/metabolism , Keloid/metabolism , Skin/metabolism , Adolescent , Adult , Aged , Alpha-Globulins/metabolism , Cicatrix/pathology , Extracellular Matrix/metabolism , Female , Humans , Keloid/pathology , Male , Middle Aged , Skin/pathology , Young Adult
2.
Osteoarthritis Cartilage ; 16(11): 1343-55, 2008 Nov.
Article in English | MEDLINE | ID: mdl-18524635

ABSTRACT

OBJECTIVE: We have examined the occurrence of the inflammation-associated inter-alpha-trypsin inhibitor (IalphaI) components, bikunin, heavy chain (HC)1 and HC2 in normal cartilage and osteoarthritis (OA) cartilage and synovial fluids. DESIGN/METHODS: Cartilage extracts from normal donors and late-stage OA patients, and synovial fluids from OA patients were studied by Western blot with multiple antibodies to bikunin, HC1 and HC2. Cell and matrix localization was determined by immunohistochemistry and mRNA by RT-PCR. RESULTS: Bikunin.chondroitin sulfate (CS) and IalphaI were abundant in OA cartilages, but virtually undetectable in normal. In both OA and normal cartilages, HCs were largely present in a novel C-terminally truncated 50-kDa form, with most, if not all of these being attached to CS on a proteoglycan other than bikunin. Synovial fluids from OA patients contained bikunin.CS and full-length (approximately 90 kDa) HCs linked to hyaluronan (HA) as HC.HA (SHAP.HA). Immunohistochemistry showed intracellular and cell-associated staining for bikunin and HCs, consistent with their synthesis by superficial zone chondrocytes. PCR on multiple human normal and OA cartilage samples detected transcripts for HC1 and HC2 but not for bikunin. In OA cartilages, immunostaining was predominantly matrix-associated, being most intense in regions with a pannus-like fibrotic overgrowth. CONCLUSION: The truncated structure of HCs, their attachment to a proteoglycan other than bikunin, PCR data and intracellular staining are all consistent with synthesis of HC1 and HC2 by human articular chondrocytes. The presence of bikunin.CS and IalphaI in OA cartilage, but not in normal, appears to be due to diffusional uptake and retention through fibrillated (but not deeply fissured) cartilage surfaces.


Subject(s)
Alpha-Globulins/biosynthesis , Cartilage, Articular/metabolism , Chondrocytes/metabolism , Osteoarthritis/metabolism , Proteoglycans/metabolism , Alpha-Globulins/chemistry , Blotting, Western , Chondroitin Sulfate Proteoglycans/metabolism , Chondroitin Sulfates/chemistry , Humans , Hyaluronic Acid/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Synovial Fluid
3.
Biochem Soc Trans ; 35(Pt 4): 672-6, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17635118

ABSTRACT

The inflammation-associated protein TSG-6 (the product of tumour necrosis factor-stimulated gene-6) can form covalent complexes with the heavy chains (HC1 and HC2) of IalphaI (inter-alpha-inhibitor); namely, TSG-6.HC1 and TSG-6.HC2, which act as intermediates in the covalent transfer of HCs on to the GAG (glycosaminoglycan) HA (hyaluronan). HC.HA, which is formed for example in the synovial fluids of arthritis patients, is more aggregated than unmodified HA and has altered mechanical and cell-binding properties. The expansion of the HA-rich cumulus ECM (extracellular matrix) during ovulation is critically dependent on the catalysis of HC.HA generation by TSG-6, with TSG-6(-/-) mice being female infertile because of failure of HA cross-linking. It has been shown recently that TSG-6-mediated HC.HA formation is essential for the formation of HA-rich pericellular matrix and for cell migration in a model of wound healing. In contrast, in this model, the formation of cell-associated HA cable-like structures, although requiring the transfer of HCs on to HA, might not involve TSG-6. TSG-6-mediated HC transfer involves two sequential transesterification processes, where HCs are transferred from the CS (chondroitin sulfate) of IalphaI first on to TSG-6 and then on to HA. TSG-6 is an essential co-factor and catalyst in this chain of events, with both TSG-6.HC formation and HC transfer being dependent on the presence of Mg(2+) or Mn(2+) ions.


Subject(s)
Alpha-Globulins/metabolism , Hyaluronic Acid/metabolism , Animals , Humans
4.
Biochem Soc Trans ; 34(Pt 3): 446-50, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16709183

ABSTRACT

TSG-6 is a multifunctional protein that is up-regulated in many pathological and physiological contexts, where it plays important roles in inflammation and tissue remodelling. For example, it is a potent inhibitor of neutrophil migration and can modulate the protease network through inhibition of plasmin. TSG-6 binds a wide range of GAGs (glycosaminoglycans) [i.e. HA (hyaluronan), chondroitin 4-sulphate, dermatan sulphate, heparin and heparan sulphate] as well as a variety of protein ligands, where these interactions can influence the activities of TSG-6. For example, through its association with HA, TSG-6 can mediate HA cross-linking via several different mechanisms, some of which promote leucocyte adhesion. Binding to heparin, however, enhances the ability of TSG-6 to potentiate the anti-plasmin activity of inter-alpha-inhibitor, which binds non-covalently to TSG-6 via its bikunin chain. Furthermore, although HA and heparin interact with distinct sites on the Link module, the binding of heparin can inhibit subsequent interaction with HA. In addition, the interactions of TSG-6 with HA, heparin and at least some of its protein ligands are sensitive to pH. Therefore it seems that in different tissue micro-environments (characterized, for example, by pH and GAG content), TSG-6 could be partitioned into functional pools with distinct activities.


Subject(s)
Cell Adhesion Molecules/physiology , Inflammation Mediators/physiology , Animals , Humans
5.
Eur Spine J ; 14(1): 36-42, 2005 Feb.
Article in English | MEDLINE | ID: mdl-15549486

ABSTRACT

Inflammation and irritation of the nerve roots has been indicated as an important factor in the pain associated with symptomatic disc herniations. Tumour necrosis factor alpha (TNFalpha) is now believed to be involved in this pathway. TNFalpha causes connective tissue cells in culture to synthesise a glycoprotein, TNFalpha-stimulated gene-6 (TSG-6). TSG-6 is found in inflammatory diseases of related connective tissues, such as articular cartilage in rheumatoid arthritis, but is not present in unaffected individuals. In order to determine if TSG-6 occurred in intervertebral disc (and cartilage endplate), we have investigated the presence of TSG-6 and its binding protein, inter-alpha-inhibitor (IalphaI), in 58 herniated and 15 non-herniated discs. Immunostaining for the cytokines, IL-1alpha, IL-1beta and TNFalpha, has also been carried out. We have demonstrated that both TSG-6 and IalphaI occur commonly in human intervertebral disc matrix with at least some TSG-6 in 98% of discs studied and IalphaI in all of them. Staining for TSG-6 was greatest in herniated discs, particularly close to blood vessels. IalphaI immunostaining was frequently widespread throughout the disc but there was little in the cartilage endplate. It has been proposed that these molecules have widespread effects, including extracellular matrix stabilisation, down-regulation of the protease network and reduction of inflammation. Hence, the occurrence of TSG-6 and IalphaI in disc tissue could have implications in the aetiopathogenesis and future therapeutics of intervertebral disc disease.


Subject(s)
Alpha-Globulins/metabolism , Cell Adhesion Molecules/metabolism , Inflammation Mediators/metabolism , Intervertebral Disc Displacement/metabolism , Intervertebral Disc Displacement/physiopathology , Intervertebral Disc/metabolism , Adolescent , Adult , Aged , Cartilage/metabolism , Cartilage/pathology , Cartilage/physiopathology , Cytokines/metabolism , Extracellular Matrix/metabolism , Humans , Immunohistochemistry , Inflammation/metabolism , Inflammation/pathology , Inflammation/physiopathology , Intervertebral Disc/chemistry , Intervertebral Disc/pathology , Intervertebral Disc Displacement/pathology , Middle Aged , Radiculopathy/etiology , Radiculopathy/pathology , Radiculopathy/physiopathology , Tumor Necrosis Factor-alpha/metabolism
6.
Front Biosci ; 6: D914-26, 2001 Aug 01.
Article in English | MEDLINE | ID: mdl-11487476

ABSTRACT

The human major histocompatibility complex (MHC), or human leukocyte antigen (HLA) region, encompasses over 4 Mb of DNA on the short arm of chromosome 6 and is traditionally divided into the class I, class II and class III regions. The MHC has now been entirely sequenced and ~220 genes have been defined of which ~62 are in the class III region. It is becoming clear that many of the latter encode proteins that are likely to be involved in the immune and inflammatory responses. The MHC is known to contribute to a large number of immune-related disorders including insulin dependent diabetes mellitus, rheumatoid arthritis, common variable immunodeficiency and IgA deficiency and there is growing evidence that genes within the class III region are important in determining susceptibility to many of these complex conditions. Genes in the class III region have also been implicated in a number of non-immune-related diseases such as congenital adrenal hyperplasia and sialidosis. Now that the full gene content of the class III region is known the stage is set for the identification and characterisation of candidate disease genes, which will allow greater understanding of the causes of many MHC-linked diseases and thus aid the development of improved treatments.


Subject(s)
Major Histocompatibility Complex , Genetic Predisposition to Disease , Humans , Immune System Diseases/genetics
7.
Int J Cancer ; 92(6): 797-804, 2001 Jun 15.
Article in English | MEDLINE | ID: mdl-11351298

ABSTRACT

Increased sialylation in cell surface glycoproteins is one characteristic feature of cancer cells, particularly related to their metastatic potential and invasiveness. Expression of lysosomal-type sialidase, which plays a major role in hydrolysis of such sialo-glycoproteins, is therefore considered to have a great influence on malignant properties of cancer cells. To investigate whether the sialidase expression level is linked to the malignant phenotype, we transfected B16-BL6 murine melanoma cells, a highly invasive and metastatic line, with an expression vector harboring a rat lysosomal sialidase cDNA; then clones were isolated and examined for changes in biological character. Sialidase-overexpressing cells showed suppression of experimental pulmonary metastasis and tumor progression. The transfectants exhibited diminished cell growth, anchorage-independent growth and increased sensitivity to apoptosis induced by suspension culture or serum depletion in vitro, but no significant alterations in invasiveness, cell motility and cell attachment to fibronectin, collagen IV and laminin. Flow cytometric analysis with either peanut agglutinin (PNA) or Ricinus communis agglutinin (RCA) lectin revealed that desialylated forms of glycoproteins on the cell surfaces were increased. In particular, a desialylated form of a cell surface glycoprotein of 83 kDa was prominent in the transfectants, as determined by galactose oxidase labeling. These observations indicate that sialidase expression is inversely associated with metastatic potential and tumor growth in cancer cells, probably through a regulation mechanism that suppresses cell growth and anchorage-independent growth and promotes apoptosis with deprivation of cell anchorage.


Subject(s)
Lysosomes/enzymology , Neuraminidase/biosynthesis , Neuraminidase/genetics , Animals , Apoptosis , Blotting, Western , Cell Adhesion , Cell Division , Cell Movement , Collagen/metabolism , Culture Media, Serum-Free/pharmacology , DNA, Complementary/metabolism , Electrophoresis, Polyacrylamide Gel , Fibronectins/metabolism , Flow Cytometry , Galactose Oxidase/metabolism , Genetic Vectors , Glycoproteins/metabolism , Laminin/metabolism , Lectins/metabolism , Lung Neoplasms/secondary , Melanoma, Experimental , Mice , Mice, Inbred C57BL , Molecular Sequence Data , N-Acetylneuraminic Acid/metabolism , Neoplasm Invasiveness , Neoplasm Metastasis , Phenotype , Polyhydroxyethyl Methacrylate/metabolism , Precipitin Tests , Rats , Reverse Transcriptase Polymerase Chain Reaction , Time Factors , Transfection , Tumor Cells, Cultured
8.
Tissue Antigens ; 56(1): 38-44, 2000 Jul.
Article in English | MEDLINE | ID: mdl-10958354

ABSTRACT

The three major histocompatibility complex (MHC)-linked hsp70s have been screened for variation in their 28 kDa C-terminal regions by direct nucleotide sequencing of the corresponding DNA fragments. No amino acid variation was detected in the major heat-inducible hsp70 (encoded by hsp70-1 and hsp70-2), although previously unreported silent mutations were identified in all three of the MHC-linked hsp70 genes. A novel coding polymorphism, a G to A transition, was identified at nucleotide 2763 of hsp70-hom (hom-2763). This dimorphism results in a glutamic acid to lysine alteration at position 602 in the C-terminal domain of hsp70-hom. The frequencies of the A-2763 and G-2763 alleles were calculated to be 27% and 73%, respectively. The hom-2763 dimorphism was characterised in 81 HLA-homozygous cell lines using an ARMS-PCR assay and A-2763 was found to be in strong linkage disequilibrium with DRB1*04 (Pc=1.31 x 10(-7), following Bonferoni's correction). Analysis of 60 rheumatoid arthritis (RA) families, each with an affected sib-pair, revealed an association between hsp70-hom A-2763 and RA using both the transmission disequilibrium test (TDT) and the transmission to sib-pair (Tsp) test (P=0.0038 and P=0.013, respectively). This association may be due to linkage disequilibrium with HLA-DR alleles, but could represent an additional risk factor for RA in the MHC class III region.


Subject(s)
Arthritis, Rheumatoid/genetics , HSP70 Heat-Shock Proteins/genetics , Major Histocompatibility Complex/genetics , Polymorphism, Single Nucleotide , Genetic Linkage , HLA-DR Antigens/genetics , HLA-DRB1 Chains , Humans , Linkage Disequilibrium , Polymerase Chain Reaction
9.
Exp Hematol ; 27(11): 1627-36, 1999 Nov.
Article in English | MEDLINE | ID: mdl-10560910

ABSTRACT

We previously demonstrated that lysis of tumor cells that express Hsp70, the highly stress-inducible member of the HSP70 family, on their plasma membrane is mediated by natural killer (NK) cells. Here, we studied the effects of different proteins of the HSP70 family in combination with interleukin 2 (IL-2) on the proliferation and cytotoxic activity of human NK cells in vitro. Proliferation of NK cells was significantly enhanced by human recombinant Hsp70 (rHsp70) and to a lesser extent by rHsp70homC, the recombinant C-terminal peptide-binding domain derived from Hsp70hom, but not by the constitutive Hsc70 or DnaK, the Escherichia coli analogue of human Hsp70. Even rHsp70 protein alone moderately enhances proliferation and cytolytic activity of NK cells, thus indicating that the stimulatory effect is not strictly dependent on IL-2. NK cells stimulated with rHsp70 protein also exhibit an increased secretion of interferon gamma (IFN-gamma). The phenotypic characterization of NK cells with specificity for Hsp70-expressing tumor cells revealed a CD16dim/CD56bright and increased CD57 and CD94 expression. The cytolytic activity of NK cells also was significantly reduced when a CD94-specific antibody or rHsp70 was added directly before the cytotoxicity assay, whereas other antibodies directed against CD57 and major histocompatibility complex class I molecules or Hsp70 proteins, including Hsc70 and DnaK, did not affect the NK-mediated killing. However, long-term incubation of NK cells with rHsp70 protein enhances not only the proliferative but also the cytolytic response against Hsp70-expressing tumor cells. Our results indicate that the C-terminal domain of Hsp70 protein affects not only the proliferative but also the cytolytic activity of a phenotypically distinct NK cell population with specificity for Hsp70-expressing tumor cells. 1999 International Society for Experimental Hematology.


Subject(s)
HSP70 Heat-Shock Proteins/pharmacology , Killer Cells, Natural/drug effects , Lectins, C-Type , Antibody Specificity , Antigens, CD/immunology , Cell Adhesion/drug effects , Cell Division/drug effects , Cells, Cultured , Cytokines/metabolism , Cytotoxins/physiology , Humans , Membrane Glycoproteins/immunology , NK Cell Lectin-Like Receptor Subfamily D , Stimulation, Chemical , Tumor Cells, Cultured
10.
Glycobiology ; 7(7): 975-86, 1997 Oct.
Article in English | MEDLINE | ID: mdl-9363440

ABSTRACT

The Neu1 locus, in the S region of the murine histocompatibility-2 complex, regulates the sialic acid content of several liver lysosomal enzymes. Three alleles, Neu1a, Neu1b, and Neu1c, have been described on the basis of differential sialylation of the enzyme liver acid phosphatase. The Neu1a allele occurs in a small number of mouse strains, e.g., SM/J and is associated with sialidase deficiency. We recently described G9, a sialidase gene in the human major histocompatibility complex (Milner et al. (1997) J. Biol. Chem., 272, 4549-4558), and we now report the characterization of the equivalent gene in mouse. The protein product of the murine G9 gene is 409 amino acids in length and is 83% identical to its human orthologue. Expression of the murine G9 protein in insect cells has confirmed that it is a sialidase, with optimal activity at pH 5. To elucidate the basis of sialidase deficiency in mouse strains carrying the Neu1a allele, we have sequenced the G9 coding regions from mice carrying the three Neu1 alleles and hence defined the amino acid sequence characteristic of each allotype. Of particular interest is a Leu-209 to Ile mutation that is unique to the Neu1a allotype and is associated with reductions in sialidase activity of approximately 68% and approximately 88% compared to the Neu1b and Neu1c allotypes, respectively, when these three protein variants are expressed in insect cells. Additional factors, such as differential expression, may also influence the activities of the Neu1 allotypes in vivo. We have observed that the level of G9 mRNA is substantially reduced in mice carrying the Neu1a allele compared to the Neu1b (85-95% reduction) and Neu1c (approximately 70% reduction) alleles.


Subject(s)
Major Histocompatibility Complex/genetics , Neuraminidase/genetics , Neuraminidase/metabolism , Point Mutation , RNA, Messenger/genetics , Alleles , Amino Acids/genetics , Amino Acids/metabolism , Animals , Baculoviridae/genetics , Cloning, Molecular , DNA, Complementary , Humans , Mice , Mice, Inbred Strains , Polymorphism, Genetic , RNA, Messenger/metabolism , Spodoptera
11.
J Biol Chem ; 272(7): 4549-58, 1997 Feb 14.
Article in English | MEDLINE | ID: mdl-9020182

ABSTRACT

Mammalian sialidases are important in modulating the sialic acid content of cell-surface and intracellular glycoproteins. However, the full extent of this enzyme family and the physical and biochemical properties of its individual members are unclear. We have identified a novel gene, G9, in the human major histocompatibility complex (MHC), that encodes a 415-amino acid protein sharing 21-28% sequence identity with the bacterial sialidases and containing three copies of the Asp-block motif characteristic of these enzymes. The level of sequence identity between human G9 and a cytosolic sialidase identified in rat and hamster (28-29%) is much less than would be expected for analogous proteins in these species, suggesting that G9 is distinct from the cytosolic enzyme. Expression of G9 in insect cells has confirmed that it encodes a sialidase, which shows optimal activity at pH 4.6, but appears to have limited substrate specificity. The G9 protein carries an N-terminal signal sequence and immunofluorescence staining of COS7 cells expressing recombinant G9 shows localization of this sialidase exclusively to the endoplasmic reticulum. The location of the G9 gene, within the human MHC, corresponds to that of the murine Neu-1 locus, suggesting that these are analogous genes. One of the functions attributed to Neu-1 is the up-regulation of sialidase activity during T cell activation.


Subject(s)
Major Histocompatibility Complex/genetics , Neuraminidase/genetics , Amino Acid Sequence , Animals , Baculoviridae/genetics , Base Sequence , COS Cells , Cloning, Molecular , Cricetinae , DNA, Complementary , Humans , Molecular Sequence Data , Neuraminidase/metabolism , Rats , Sequence Homology, Amino Acid , Spodoptera , Subcellular Fractions/enzymology
13.
Curr Opin Immunol ; 5(6): 887-93, 1993 Dec.
Article in English | MEDLINE | ID: mdl-8297520

ABSTRACT

In the last year progress has been made towards elucidating the roles of the MHC gene products in autoimmunity. A major advance has been the recent determination of the crystallographic structure of the human MHC class II molecule, which will be invaluable in delineating the minimum structural requirements for peptides that induce autoimmune disease. In addition, the use of animal models and transgenic mouse technology is continuing to increase our understanding of the involvement of the MHC gene products in immunopathogenesis.


Subject(s)
Autoimmunity/genetics , Major Histocompatibility Complex , Animals , Autoimmune Diseases/genetics , Disease Models, Animal , Humans , Mice , Mice, Transgenic
14.
Biochem J ; 290 ( Pt 3): 811-8, 1993 Mar 15.
Article in English | MEDLINE | ID: mdl-8457211

ABSTRACT

The class III region of the human major histocompatibility complex spans approx. 1.1 Mbp on the short arm of chromosome 6 and is known to contain at least 36 genes. The complete nucleotide sequence of a 3.4 kb mRNA from one of these genes, G9a (or BAT8), has been determined from cDNA and genomic DNA clones. The single-copy G9a gene encodes a protein product of 1001 amino acids with a predicted molecular mass of 111,518 Da. The C-terminal region (residues 730-999) of the G9a protein has been expressed in Escherichia coli as a fusion protein with the 26 kDa glutathione S-transferase of Schistosoma japonicum (Sj26). The fusion protein has been used to raise antisera which, in Western-blot analysis, cross-react specifically with an intracellular protein of approx. 98 kDa. The function of the G9a protein is unknown. However, comparison of the derived amino acid sequence of G9a with the protein databases has revealed interesting similarities with a number of other proteins. The C-terminal region of G9a is 35% identical with a 149 amino acid segment of the Drosophila trithorax protein. In addition the G9a protein has been shown to contain six contiguous copies of a 33-amino acid repeat. This repeat, originally identified in the Notch protein of Drosophila and known as the cdc10/SW16 or ANK repeat, is also found in a number of other human proteins and may be involved in intracellular protein-protein interactions.


Subject(s)
Ankyrins/genetics , DNA/chemistry , Major Histocompatibility Complex/genetics , Repetitive Sequences, Nucleic Acid , Amino Acid Sequence , Base Sequence , Blotting, Northern , Blotting, Southern , Blotting, Western , Codon , DNA/isolation & purification , Escherichia coli/metabolism , Exons , Humans , Molecular Sequence Data , RNA, Messenger/chemistry , Recombinant Fusion Proteins/metabolism , Restriction Mapping , Sequence Homology, Amino Acid
15.
Bioessays ; 14(8): 565-71, 1992 Aug.
Article in English | MEDLINE | ID: mdl-1365911

ABSTRACT

The human major histocompatibility complex (MHC), on the short arm of chromosome 6, represents one of the most extensively characterised regions of the human genome. This approximately 4 Mb segment of DNA contains genes encoding the polymorphic MHC class I and class II molecules which are involved in antigen presentation during an immune response. Recently the whole of the MHC has been cloned in cosmids and/or yeast artificial chromosomes (YACs) and large portions have been characterised for the presence of novel genes. Many unrelated genes, both housekeeping and tissue specific, have been identified and the gene density in some regions is now approaching one gene every few kilobases. Some of the novel genes encode proteins involved in the intracellular processing and transport of antigens that are presented by MHC class I molecules. Others, however, have no obvious role in the immune response. The MHC is located in the chromosome band 6p21.3 which is a Giemsa (G)-light band. The detection of such a large number of functional genes (at least 70) in this region is compatible with the idea that both housekeeping and tissue-specific genes are localised predominantly in G-light bands.


Subject(s)
Chromosomes, Human, Pair 6 , Genes , Major Histocompatibility Complex , Chromosome Mapping , Chromosomes, Artificial, Yeast , Cloning, Molecular , Cosmids , Genes, MHC Class I , Genes, MHC Class II , Genome, Human , Humans
16.
J Immunol ; 148(9): 2795-802, 1992 May 01.
Article in English | MEDLINE | ID: mdl-1573268

ABSTRACT

The C4A6 allotype of the human complement component C4 is known to be defective in C5 binding within the C5 convertase. To characterize the position and nature of the molecular defect in the C4A6 allotype we have isolated the C4A6 gene from a cosmid genomic DNA library. Direct sequencing of a 4.4-kb region of the gene covering exons 17 to 31 and encoding the C4d fragment and most of the rest of the alpha chain of C4 revealed that the C4A6 allele encodes the A isotypic residues Pro Cys-Leu Asp at positions 1101, 1102, 1105, and 1106 and the same residues as the C4A3 alpha gene at the polymorphic positions 1054 (Asp), 1157 (Asn), 1182 (Thr), 1188 (Val), 1191 (Leu) and 1267 (Ala). In addition the C4A6 allele was shown to encode a Pro at the previously characterized polymorphic position 707 in the C4a peptide where the C4A3 alpha allele encodes a Leu. The remaining 26 exons of the C4A6 gene were analyzed by detecting nucleotide mismatches in C4A6/C4A3 and C4A6/C4B1 DNA heteroduplexes using the chemical cleavage of mismatch technique. The regions around detected mismatches were sequenced. In total seven nucleotide differences were defined on comparison of the C4A6 and other C4 sequences, of which three were present in exons. Two of these resulted in amino acid changes. One of the amino acid differences is a known polymorphism in C4, a Tyr/Ser substitution at position 328 in the beta-chain. The second amino acid difference caused by a C to T transition in the first base of the codon for amino acid residue 458 was the only one shown to be specific to the C4A6 allotype. The C4A6 allotype contains a Trp residue at this position in the beta-chain instead of the Arg residue found in all other C4A and C4B allotypes so far characterized. We propose that this Arg to Trp substitution at beta-chain residue 458 is responsible for the inability of C4A6 to bind C5 in the C5 convertase.


Subject(s)
Complement C4a/genetics , Alleles , Amino Acid Sequence , Base Sequence , Blotting, Southern , Chromosome Mapping , Cloning, Molecular , Complement C5/metabolism , Cosmids , Exons , Gene Library , Humans , Molecular Sequence Data , Mutation , Sequence Homology, Nucleic Acid
17.
Immunogenetics ; 36(6): 357-62, 1992.
Article in English | MEDLINE | ID: mdl-1356099

ABSTRACT

Three genes encoding members of the M(r) 70,000 heat shock protein family (HSP70) are known to lie in the class III region of the human major histocompatibility complex. In order to determine whether these genes or their protein products exhibit any polymorphism the three genes have been specifically amplified from genomic DNA and sequenced. The HSP70-1 and HSP70-2 genes encode the major heat-inducible HSP70. A comparison of the nucleotide sequences of these genes from B8, SC01, DR3, B18, F1C30, DR3, and B7, SC30, DR2 haplotypes has revealed only very limited sequence variation which is not associated with any amino acid polymorphism. The HSP70-Hom gene encodes a protein that is highly related to HSP70-1, but which is not heat-inducible. Nucleotide sequence analysis of this gene from different haplotypes has revealed a Met----Thr amino acid substitution at residue 493 in a number of the haplotypes tested. This variable amino acid lies in the proposed peptide-binding site of the HSP70-Hom protein.


Subject(s)
Genetic Linkage/genetics , Heat-Shock Proteins/genetics , Major Histocompatibility Complex/genetics , Polymorphism, Restriction Fragment Length , Base Sequence , Cell Line, Transformed , HLA Antigens/genetics , Haplotypes/genetics , Humans , Molecular Sequence Data , Polymerase Chain Reaction
18.
Immunogenetics ; 32(4): 242-51, 1990.
Article in English | MEDLINE | ID: mdl-1700760

ABSTRACT

A duplicated locus encoding the major heat shock-induced protein HSP70 is located in the major histocompatibility complex (MHC) class III region 92 kilobases (kb) telomeric to the C2 gene. Nucleotide sequence analysis of the two intronless genes, HSP70-1 and HSP70-2, has shown that they encode an identical protein product of 641 amino acids. A third intronless gene, HSP70-Hom, has also been identified 4 kb telomeric to the HSP70-1 gene. This encodes a more basic protein of 641 amino acids which has 90% sequence similarity with HSP70-1. In order to investigate the expression of the three (MHC)-linked HSP70 genes individually by northern blot analysis, we have isolated locus-specific probes from the 3' untranslated regions of the genes. The HSP70-1 and HSP70-2 genes have been shown to be expressed at high levels as a approximately 2.4 kb mRNA in cells heat-shocked at 42 degrees C. HSP70-1 is also expressed constitutively at very low levels. The HSP70-Hom gene, which has no heat shock consensus sequence in its 5' flanking sequence, is expressed as a approximately 3 kb mRNA at low levels both constitutively and following heat shock.


Subject(s)
Genetic Linkage , Heat-Shock Proteins/genetics , Major Histocompatibility Complex/genetics , Amino Acid Sequence , Base Sequence , Blotting, Northern , Blotting, Southern , Chromosome Mapping , Cloning, Molecular , DNA/analysis , Gene Expression , Heat-Shock Proteins/biosynthesis , Humans , Molecular Sequence Data , Multigene Family , Polymorphism, Restriction Fragment Length , RNA/analysis , Sequence Homology, Nucleic Acid
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