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1.
Nervenarzt ; 73(8): 774-8, 2002 Aug.
Article in German | MEDLINE | ID: mdl-12242967

ABSTRACT

Ten to twenty percent of the offspring of mothers suffering from myasthenia gravis (MG) also develop transient neonatal MG, since maternal antibodies are able to cross the placenta. We report the course of two newborns of a mother with MG and a healthy father. The first pregnancy was complicated during the 3rd trimester by a hydramnion. The newborn presented with generalized muscle weakness, respiratory distress, weak sounding, anaemia, and poor sucking. Mechanical ventilation was necessary. Confirmation of the diagnosis was achieved by the result of repetitive muscle stimulation, showing a typical decrement in the EMG, and measurement of serum antiacetylcholin receptor antibodies. For 3 months, the infant was treated with neostigmin (cholinesterase inhibitor). After 26 days of hospitalization, the patient was released and followed up regularly. Myasthenic symptoms completely resolved. Side effects of the treatment were not observed. The course of the second pregnancy was normal. This second newborn was healthy. Our case report is remarkable for the very different presentation of two children of the same mother with MG during pregnancy and after delivery, with one child developing severe transient neonatal MG, initially requiring intensive care unit (ICU) treatment followed by quick recovery, and one child being healthy. We also present a score for monitoring the clinical course and adjusting anticholinesterase therapy accordingly.


Subject(s)
Myasthenic Syndromes, Congenital/diagnosis , Neostigmine/therapeutic use , Adult , Combined Modality Therapy , Female , Follow-Up Studies , Humans , Infant, Newborn , Intensive Care, Neonatal , Myasthenic Syndromes, Congenital/therapy , Neurologic Examination/drug effects , Pregnancy , Prenatal Diagnosis , Respiration, Artificial
2.
J Bacteriol ; 182(2): 311-9, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10629175

ABSTRACT

In Eubacteria, expression of genes transcribed by an RNA polymerase holoenzyme containing the alternate sigma factor sigma(54) is positively regulated by proteins belonging to the family of enhancer-binding proteins (EBPs). These proteins bind to upstream activation sequences and are required for the initiation of transcription at the sigma(54)-dependent promoters. They are typically inactive until modified in their N-terminal regulatory domain either by specific phosphorylation or by the binding of a small effector molecule. EBPs lacking this domain, such as the PspF activator of the sigma(54)-dependent pspA promoter, are constitutively active. We describe here the in vivo and in vitro properties of the PspA protein of Escherichia coli, which negatively regulates expression of the pspA promoter without binding DNA directly.


Subject(s)
Bacterial Proteins/physiology , DNA-Binding Proteins , DNA-Directed RNA Polymerases/physiology , Escherichia coli/physiology , Heat-Shock Proteins/physiology , Membrane Proteins/physiology , Sigma Factor/physiology , Transcription, Genetic , Bacterial Proteins/isolation & purification , DNA, Bacterial/metabolism , Dimerization , Electrophoresis, Polyacrylamide Gel , Escherichia coli Proteins , Heat-Shock Proteins/isolation & purification , RNA Polymerase Sigma 54
3.
Mol Microbiol ; 34(4): 745-55, 1999 Nov.
Article in English | MEDLINE | ID: mdl-10564514

ABSTRACT

Assembly and export of filamentous phage requires four non-capsid proteins: the outer membrane protein, pIV; the inner membrane proteins, pI and pXI; and a cytoplasmic host factor, thioredoxin. Chemical cross-linking of intact cells demonstrates a trans-membrane complex containing pI and pIV. Formation of the complex protects pI from proteolytic cleavage by an endogenous protease. This protection also requires pXI, which is identical to the C-terminal portion of pI. This indicates that pXI, which is required for phage assembly in its own right, is also part of the complex. This complex forms in the absence of any other phage proteins or the DNA substrate; hence, it represents the first preinitiation step of phage morphogenesis. On the basis of protease protection data, we propose that the preinitiation complex is converted to an initiation complex by binding phage DNA, thioredoxin and the initiating minor coat protein(s).


Subject(s)
Bacteriophages/physiology , Capsid/physiology , Virus Assembly , Bacteriophages/drug effects , Binding Sites , Capsid/genetics , Cross-Linking Reagents/pharmacology , Endopeptidases/metabolism , Endopeptidases/pharmacology , Viral Nonstructural Proteins/genetics , Viral Nonstructural Proteins/metabolism , Virus Assembly/drug effects
4.
J Mol Biol ; 289(5): 1253-65, 1999 Jun 25.
Article in English | MEDLINE | ID: mdl-10373366

ABSTRACT

Filamentous phage assemble at the membrane of infected cells. The phage filament is released from the membrane at the end of assembly, after four to five copies of the minor proteins, pIII and pVI, have been added to the end of the virion. In the absence of pIII or pVI, phage filaments are not released, but remain associated with the cells. The C-terminal portion of pIII, termed the "C" domain, is required for the release of stable virions. With the use of pIII C-terminal fragments of increasing size, termination of assembly can be divided into various steps. An 83-residue fragment leads to the incorporation of pVI into the assembling phage, but does not release it from the membrane. A slightly longer fragment (93 residues) is sufficient to release the particle into the culture supernatant. However, these released particles are unstable in the detergent, sarkosyl, which does not disrupt wild-type phage. A fragment of >121 residues is needed for the particle to become detergent resistant. Thus, the C-domain can be divided into two subdomains: C2, sufficient for release, and C1, required for virion stability.A model for termination of phage assembly is proposed in which pIII and pVI dock to the membrane-associated filament and form a pre- termination complex. Then, a conformational change involving the C2 domain of pIII disrupts the hydrophobic interactions with the inner membrane, releasing the phage from the cells. The pIII-mediated release of phage from the membranes points to one possible mechanism for excision of membrane-anchored protein complexes from lipid bilayers.


Subject(s)
Coliphages/physiology , DNA-Binding Proteins/physiology , Viral Fusion Proteins/physiology , Virus Assembly , Capsid Proteins , Cell Membrane , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Escherichia coli/virology , Viral Fusion Proteins/genetics , Viral Fusion Proteins/metabolism , Virion
5.
J Mol Biol ; 285(2): 469-83, 1999 Jan 15.
Article in English | MEDLINE | ID: mdl-9878422

ABSTRACT

Transcription of the phage-shock protein (psp) operon in Escherichia coli is driven by a sigma54 promoter, stimulated by integration host factor and dependent on an upstream, cis-acting sequence and an activator protein, PspF. PspF belongs to the enhancer binding protein family but lacks an N-terminal regulatory domain. Purified PspF is not modified and has an ATPase activity that is increased twofold in the presence of DNA carrying the psp cis-acting sequence. Purified mutant His-tagged PspF that lacks the C-terminal DNA-binding motif has a DNA-independent ATPase activity when present at 30-fold the concentration of the wild-type protein. Both proteins oligomerize in solution in an ATP and DNA-independent manner. The wild-type activator protein, but not the DNA-binding mutant, binds specifically to the cis-acting sequence. Analysis of the sequence protected by PspF demonstrates the presence of two upstream binding sites within the sequence, UAS I and UAS II, which together constitute the psp enhancer. Protection at low protein concentrations is more pronounced and more extensive on a supercoiled DNA than on a linear template. Full expression of the psp operon upon hyperosmotic shock depends on wild-type PspF, but only partially requires the presence of the psp enhancer.


Subject(s)
Bacterial Proteins/metabolism , DNA-Binding Proteins/metabolism , Escherichia coli Proteins , Escherichia coli/genetics , Trans-Activators/metabolism , Adenosine Triphosphatases/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/isolation & purification , Base Sequence , Binding Sites , DNA, Bacterial , DNA-Binding Proteins/genetics , DNA-Binding Proteins/isolation & purification , DNA-Directed RNA Polymerases/metabolism , Enhancer Elements, Genetic , Heat-Shock Proteins/genetics , Histidine , Molecular Sequence Data , Mutagenesis , Operon , Osmotic Pressure , Promoter Regions, Genetic , RNA Polymerase Sigma 54 , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Sigma Factor/metabolism , Trans-Activators/genetics , Trans-Activators/isolation & purification
6.
J Mol Biol ; 282(1): 25-41, 1998 Sep 11.
Article in English | MEDLINE | ID: mdl-9733639

ABSTRACT

Filamentous phage protein III (pIII), located at one end of the phage, is required for infectivity and stability of the particle. Cells infected with phage from which gene III has been completely deleted produce particles that are not released into the medium but stay associated at the surface. These particles are much longer than normal phage. They can be released by subsequent expression of pIII. Viewed with the electron microscope, cells infected with gene III deletion phage are decorated with structures that resemble extremely long pili. Surprisingly, such cells are viable and can form colonies. The pIII deficiency can be complemented in trans, but there is a threshold concentration below which assembly does not occur. Above this threshold, pIII is used very efficiently and is incorporated into infectious but longer than unit length phage. As the concentration of pIII is increased, the number of infectious particles increases, and their average length decreases.pIII stabilizes pVI, a second phage protein found at the pIII end of the particle. In the absence of pIII, degradation of pVI is very rapid. pIII is thus not only required for infectivity and particle stability, but to terminate assembly and release the phage from its assembly site.


Subject(s)
DNA-Binding Proteins/metabolism , Inovirus/growth & development , Viral Fusion Proteins/metabolism , Virus Assembly , Capsid Proteins , DNA-Binding Proteins/genetics , Escherichia coli/ultrastructure , Escherichia coli/virology , Genetic Complementation Test , Inovirus/pathogenicity , Inovirus/ultrastructure , Protein Binding , Protein Biosynthesis , Viral Fusion Proteins/genetics , Viral Structural Proteins/metabolism
7.
Genes Dev ; 12(6): 894-900, 1998 Mar 15.
Article in English | MEDLINE | ID: mdl-9512522

ABSTRACT

Control of transcription in prokaryotes often involves direct contact of regulatory proteins with RNA polymerase from binding sites located adjacent to the target promoter. Alternatively, in the case of genes transcribed by Escherichia coli RNA polymerase holoenzyme containing the alternate sigma factor sigma54, regulatory proteins bound at more distally located enhancer sites can activate transcription via DNA looping by taking advantage of the increasing flexibility of DNA over longer distances. While this second mechanism offers a greater possible flexibility in the location of these binding sites, it is not clear how the specificity offered by the proximity of the regulatory protein and the polymerase intrinsic to the first mechanism is maintained. Here we demonstrate that integration host factor (IHF), a protein that induces a sharp bend in DNA, acts both to inhibit DNA-looping-dependent transcriptional activation by an inappropriate enhancer-binding protein and to facilitate similar activation by an appropriate enhancer-binding protein. These opposite effects have the consequence of increasing the specificity of activation of a promoter that is susceptible to regulation by proteins bound to a distal site.


Subject(s)
DNA-Binding Proteins/chemistry , DNA/chemistry , Escherichia coli Proteins , Bacterial Proteins/drug effects , Bacterial Proteins/genetics , Bacterial Proteins/pharmacology , Binding Sites/drug effects , DNA/drug effects , DNA-Binding Proteins/drug effects , DNA-Binding Proteins/metabolism , DNA-Directed RNA Polymerases/metabolism , Enhancer Elements, Genetic/physiology , Escherichia coli/chemistry , Integration Host Factors , Nucleic Acid Conformation , Promoter Regions, Genetic/drug effects , RNA Polymerase Sigma 54 , Sensitivity and Specificity , Sigma Factor/metabolism , Trans-Activators/drug effects , Trans-Activators/genetics , Transcriptional Activation/drug effects
8.
Stroke ; 29(3): 660-7, 1998 Mar.
Article in English | MEDLINE | ID: mdl-9506609

ABSTRACT

BACKGROUND AND PURPOSE: High-intensity transient signals (HITS) during cardiac surgery are capable of causing encephalopathy and cognitive deficits. This study was undertaken to determine whether intraoperative HITS cause alterations of neuropsychological function (NPF) and/or cerebral glucose metabolism (CMRGlc), even in a low-risk patient group, and whether induced changes are interrelated. METHODS: Eighteen patients without signs of cerebrovascular disease underwent elective coronary artery bypass grafting (CABG), and two of these additionally underwent valve replacement in normothermia. Intraoperatively, HITS were recorded by means of transcranial Doppler ultrasonography (TCD). Perioperatively, NPF and CMRGlc were assessed using a standardized complex test battery and positron emission tomography with 18F-2-fluoro-2-deoxy-D-glucose (FDG-PET), respectively. RESULTS: Intraoperatively, the number of HITS ranged from 90 to 1710 per patient and hemisphere, more on the right side than on the left (P<.05). HITS occurred primarily during cardiopulmonary bypass (71.3%) and, to a lesser extent, during aortic manipulation (22.2%). Changes in global and regional CMRGlc between first (one day preoperatively) and second (8 to 12 days postoperatively) FDG-PET scans were mild. No correlations were found between the number of HITS, age of patient, duration of cardiac ischemia or cardiopulmonary bypass and the changes in CMRGlc. In patients with recorded HITS and a postoperative decrease of regional CMRGlc (n=11), the maximal decrease of rCMR Glc in each hemisphere below the individual global change of CMRGlc correlated with the number of HITS (r= -0.46, P<.05). Limitations in NPF occurred 8 to 12 days postoperatively, resolved within 3 months, and were not found to be correlated to the absolute number of HITS or changes in CMRGlc. CONCLUSIONS: HITS during cardiac surgery can cause alterations of both NPF and CMRGlc, even in a low-risk patient group. However, the number of HITS and changes in NPF and CMRGlc are not necessarily interrelated, which indicates that (1) the location of brain damage related to HITS is more important for the development of NPF than is the absolute number of HITS, and (2) factors in addition to HITS might contribute to surgery-related brain damage.


Subject(s)
Brain Diseases/etiology , Brain/blood supply , Cerebrovascular Circulation , Coronary Artery Bypass/adverse effects , Glucose/metabolism , Intracranial Embolism and Thrombosis/diagnosis , Adult , Aged , Brain/metabolism , Brain Diseases/diagnosis , Cognition , Humans , Memory , Middle Aged , Neuropsychological Tests , Personality , Ultrasonography, Doppler
9.
Gene ; 198(1-2): 99-103, 1997 Oct 01.
Article in English | MEDLINE | ID: mdl-9370269

ABSTRACT

We describe the use of transcriptional fusions to the phage shock protein (psp) promoter. These fusions are expressed only when cells are infected by filamentous phage. In an application, the psp promoter was fused to the protein coding part of filamentous phage gene III (gIII). Protein III (pIII) is needed to complement mutant f1 phage containing a deletion of gIII, but its synthesis also renders cells resistant to infection. By inducing pIII production from psp-gIII only in the cells that are already infected with phage, it was possible to obtain plaques from phage in which gIII had been completely deleted. gIII was deleted from two helper phages: R408 and VCSM13, which were then propagated on cells containing the psp-gIII fusion. These two phages were tested for use in a phage display method that requires generation of noninfectious, phagemid-containing virion-like particles. Both helpers worked, but R408d3 was superior to VCSM13d3, because it generated about 1800-times fewer background infectious particles.


Subject(s)
Coliphages/genetics , DNA-Binding Proteins/genetics , Viral Fusion Proteins/genetics , Capsid Proteins , Gene Expression Regulation, Viral , Genetic Engineering/methods , Helper Viruses/genetics , Peptide Library , Plasmids , Promoter Regions, Genetic
10.
J Mol Biol ; 273(2): 377-88, 1997 Oct 24.
Article in English | MEDLINE | ID: mdl-9344746

ABSTRACT

PspF, the transcriptional activator of the pspA operon of Escherichia coli, which belongs to the enhancer binding protein (EBP) family of sigma54 activator proteins, is constitutively active in an in vitro transcription assay. PspF protein, together with RNA polymerase holoenzyme containing sigma54, is required for in vitro transcription from the pspA promoter. EBP proteins are typically subject to regulation either by post-translational modification or interaction of a specific ligand with an N-terminal regulatory domain. However, unlike other members of the EBP family, PspF lacks this domain. pspA is positively regulated by IHF in vitro, and this regulation is dependent on the topology of the DNA; a linear template is much more dependent on IHF than a supercoiled template. EBP binding to upstream activating sequences (UAS) in their target promoters is mediated by the C-terminal domain which contains a helix-turn-helix DNA-binding motif. A mutant PspF protein lacking the C-terminal DNA-binding domain is active in vitro, although at much higher concentrations than the wild-type protein. In vitro transcription from pspA templates missing one or both of the UAS sites is reduced relative to wild-type templates, but is still appreciable; however, IHF acts as a negative regulator of pspA transcription on these mutant templates. Thus, PspF bound to non-specific sequences upstream of the pspA promoter can activate pspA transcription, but this activation is inhibited by IHF. These data, taken together, support the model that a precise promoter geometry is necessary for IHF to positively regulate transcription and that IHF may act to prevent activation from inappropriately spaced upstream sites.


Subject(s)
Bacterial Proteins/biosynthesis , Bacterial Proteins/metabolism , Escherichia coli Proteins , Gene Expression Regulation, Bacterial , Heat-Shock Proteins/biosynthesis , Regulatory Sequences, Nucleic Acid , Trans-Activators/metabolism , Base Sequence , DNA-Binding Proteins/metabolism , DNA-Directed RNA Polymerases/metabolism , Enhancer Elements, Genetic , Escherichia coli/genetics , Integration Host Factors , Molecular Sequence Data , Mutation , Promoter Regions, Genetic , RNA Polymerase Sigma 54 , Sequence Deletion , Sigma Factor/metabolism , Titrimetry , Transcription, Genetic
11.
Nat Biotechnol ; 15(9): 859-65, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9306400

ABSTRACT

Escherichia coli-based artificial chromosomes have become important tools for physical mapping and sequencing in various genome projects. The lack of a general method to modify these large bacterial clones, however, has limited their utility in functional studies. We developed a simple method to modify bacterial artificial chromosomes directly in the recombination-deficient E. coli host strain by homologous recombination for in vivo studies. The IRES-LacZ marker gene was introduced into a 131 kb BAC containing the murine zinc finger gene, RU49. No rearrangements or deletions were detected in the modified BACs. Furthermore, transgenic mice were generated by pronuclear injection of the modified BAC, and germline transmission of the intact BAC has been obtained. Proper expression of the lacZ transgene in the brain has been observed, which could not be obtained with conventional transgenic constructs.


Subject(s)
Chromosomes, Bacterial , Escherichia coli/genetics , Gene Expression Regulation, Bacterial/genetics , Transformation, Genetic , Animals , Brain/metabolism , DNA, Bacterial/isolation & purification , DNA, Bacterial/pharmacology , DNA-Binding Proteins/genetics , Female , Gene Targeting , Genetic Vectors , Lac Operon/genetics , Mice , Mice, Inbred C57BL , Mice, Transgenic , Restriction Mapping , Trans-Activators/genetics , Transgenes , Zinc Fingers
12.
Mol Microbiol ; 25(3): 473-81, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9302010

ABSTRACT

PspF bound to the psp enhancer activates E sigma54 holoenzyme-dependent transcription of the Escherichia coli phage-shock protein (psp) operon and autogenously represses its own sigma70-dependent transcription, thereby keeping its concentration at a low level. It has been demonstrated previously that integration host factor (IHF) bound to a DNA site located between the psp core promoter and the PspF binding sites stimulates psp expression. We show here that wild-type IHF strongly retards DNA containing the psp promoter region. In vitro, PspF binding to the psp enhancer facilitates IHF binding, while IHF binding to the pspF-pspA-E promoter-regulatory region increases the efficacy of PspF binding to the upstream activating sequences (UASs). This is the first demonstration of co-operative binding of an activator and IHF in a sigma54-dependent system. In the absence of IHF, in vivo autoregulation of pspF transcription is lifted and, consequently, PspF production is increased, indicating that IHF enhances PspF binding to the psp enhancer in vivo.


Subject(s)
Bacterial Proteins/genetics , Bacterial Proteins/metabolism , DNA-Binding Proteins/metabolism , Escherichia coli Proteins , Escherichia coli/genetics , Escherichia coli/metabolism , Heat-Shock Proteins/genetics , Promoter Regions, Genetic , Trans-Activators/metabolism , Base Sequence , Binding Sites/genetics , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , Enhancer Elements, Genetic , Genes, Bacterial , Integration Host Factors , Molecular Sequence Data , Protein Binding
13.
J Bacteriol ; 179(16): 5232-7, 1997 Aug.
Article in English | MEDLINE | ID: mdl-9260970

ABSTRACT

Escherichia coli sigma54-dependent phage shock protein operon (pspA to -E) transcription is under the control of PspF, a constitutively active activator. Sigma70-dependent transcription of pspF is under autogenous control by wild-type PspF but not by a DNA-binding mutant, PspF deltaHTH. Negative autoregulation of PspF is continual and not affected by stimuli, like f1 pIV, that induce the pspA to -E operon. PspF production is independent of PspA (the negative regulator of the pspA to -E operon) and of PspB and -C (positive regulators).


Subject(s)
Bacterial Proteins/metabolism , Enhancer Elements, Genetic , Escherichia coli Proteins , Escherichia coli/metabolism , Trans-Activators/metabolism , Bacterial Proteins/genetics , Escherichia coli/genetics , Gene Expression Regulation, Bacterial , Heat-Shock Proteins/genetics , Heat-Shock Proteins/metabolism , Operon , Regulatory Sequences, Nucleic Acid , Trans-Activators/genetics , Transcription, Genetic
14.
J Bacteriol ; 179(10): 3095-102, 1997 May.
Article in English | MEDLINE | ID: mdl-9150200

ABSTRACT

The sequence (2,700 bp) between the aldH and pspF genes of Escherichia coli was determined. The pspF gene encodes a sigma54 transcriptional activator of the phage shock protein (psp) operon (pspA to pspE). Downstream of the pspF transcribed region are two open reading frames (ORFs), ordL and goaG, convergently oriented with respect to pspF. These two ORFs, together with the adjacent aldH gene, may constitute a novel operon (aldH-ordL-goaG). The goaG-pspF intergenic region contains a complex extragenic mosaic element, RIB. The structure of this RIB element, which belongs to the BIME-1 family, is Y(REP1) > 16 < Z1(REP2), where Y and Z1 are palindromic units and the central 16 bases contain an L motif with an ihf consensus sequence. DNA fragments containing the L motif of the psp RIB element effectively bind integration host factor (IHF), while the Y palindromic unit (REP1) of the same RIB element binds DNA gyrase weakly. Computer prediction of the pspF mRNA secondary structure suggested that the transcribed stem-loop structures formed by the 3'-flanking region of the pspF transcript containing the RIB element can stabilize and protect pspF mRNA. Analysis of pspF steady-state mRNA levels showed that transcripts with an intact RIB element are much more abundant than those truncated at the 3' end by deletion of either the entire RIB element or a single Z1 sequence (REP2). Thus, the pspF 3'-flanking region containing the RIB element has an important role in the stabilization of the pspF transcript.


Subject(s)
Antigens, Bacterial , Bacterial Proteins/genetics , Escherichia coli/genetics , Genes, Bacterial , Heat-Shock Proteins/genetics , Membrane Proteins/genetics , Open Reading Frames , Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Base Sequence , DNA Topoisomerases, Type II/metabolism , DNA-Binding Proteins/metabolism , Escherichia coli/chemistry , Escherichia coli/metabolism , Gene Expression Regulation, Bacterial , Heat-Shock Proteins/chemistry , Integration Host Factors , Membrane Proteins/metabolism , Molecular Sequence Data , Protein Structure, Secondary , RNA, Bacterial/chemistry , RNA, Messenger/metabolism
15.
Proc Natl Acad Sci U S A ; 94(8): 4068-73, 1997 Apr 15.
Article in English | MEDLINE | ID: mdl-9108106

ABSTRACT

A permeabilized cell system has been developed that is capable of assembling filamentous phage only upon addition of exogenous thioredoxin. The in vitro system exhibits the same component requirements seen in vivo: functional thioredoxin, an intact packaging signal in the substrate DNA, and the assembly protein, pIV. This crude in vitro system is insensitive to inhibitors of protein or DNA synthesis, demonstrating that particle assembly uses components that had accumulated before cell permeabilization. The temporal separation of the synthetic period, during which phage proteins and DNA accumulate, from the assembly period enabled us to examine the energy requirement for assembly. We show here that ATP hydrolysis is required for filamentous phage assembly and that the proton motive force is also important.


Subject(s)
Bacteriophages/physiology , Cell Membrane/virology , Cell Culture Techniques/methods , DNA Replication , DNA, Viral , Proton-Motive Force , Virus Replication
16.
Mol Microbiol ; 24(2): 255-61, 1997 Apr.
Article in English | MEDLINE | ID: mdl-9159513

ABSTRACT

The phage-shock-protein (psp) operon helps to ensure survival of Escherichia coli in late stationary phase at alkaline pH, and protects the cell against dissipation of its proton-motive force against challenge. It is strongly induced by filamentous phage pIV and its bacterial homologues, and by mutant porins that don't localize properly, as well as by a number of other stresses. Transcription of the operon is dependent on sigma54 and a constitutively active, autogenously controlled activator. psp-operon expression is controlled by one negatively and several positively acting regulators, none of which is a DNA-binding protein. The major product of the operon, PspA, may also serve as a negative regulator of an unusual porin, OmpG.


Subject(s)
Escherichia coli/genetics , Heat-Shock Proteins/genetics , Heat-Shock Proteins/physiology , Multigene Family , Escherichia coli/metabolism , Gene Expression , Genetic Variation , Operon
17.
J Mol Biol ; 266(5): 978-92, 1997 Mar 14.
Article in English | MEDLINE | ID: mdl-9086275

ABSTRACT

In Gram-negative bacteria, type II and type III secretion and filamentous phage assembly systems use related outer membrane proteins for substrate-specific transport across the outer membrane. We show here that the specificity domain of the phage f1 outer membrane protein pIV is contained within the 149 N-terminal amino acid residues. When the pIV(f1) specificity domain is fused to the translocator domain of the related pIV of phage IKe, the chimeric construct supports f1 but not IKe assembly. Functional coupling between the two domains in this chimeric construct is poor and is improved by a single amino acid change in the translocator domain of the pIV(IKe). In native pIV(IKe), two amino acid changes within its specificity domain are both necessary and sufficient to change the specificity from IKe to f1 assembly. Analysis of 39 chimeric constructs between pIV(f1) and the outer membrane protein PulD of the pullulanase secretion system failed to identify a comparable exchangeable specificity domain. These results indicate that the two domains may not function autonomously, and suggest that tertiary and quarternary changes of the entire translocator component rather than of an autonomous functional domain are required for specific translocation across the outer membrane.


Subject(s)
Bacterial Outer Membrane Proteins/metabolism , Carrier Proteins/metabolism , Gram-Negative Bacteria/metabolism , Peptide Fragments/metabolism , Proteins/metabolism , Viral Nonstructural Proteins/metabolism , Amino Acid Sequence , Bacterial Outer Membrane Proteins/genetics , Bacterial Proteins/biosynthesis , Biological Transport , Carrier Proteins/genetics , Gene Expression Regulation, Bacterial , Genes, Viral , Gram-Negative Bacteria/genetics , Heat-Shock Proteins/biosynthesis , Inovirus/growth & development , Models, Biological , Molecular Sequence Data , Mutation , Peptide Fragments/genetics , Recombinant Fusion Proteins/metabolism , Sequence Homology, Amino Acid , Species Specificity , Structure-Activity Relationship , Viral Nonstructural Proteins/genetics
18.
J Mol Biol ; 274(5): 722-37, 1997 Dec 19.
Article in English | MEDLINE | ID: mdl-9405154

ABSTRACT

The EcoRI endonuclease is an important recombinant DNA tool and a paradigm of sequence-specific DNA-protein interactions. We have isolated temperature-sensitive (TS) EcoRI endonuclease mutants (R56Q, G78D, P90S, V97I, R105K, M157I, C218Y, A235E, M255I, T261I and L263F) and characterized activity in vivo and in vitro. Although the majority were TS for function in vivo, all of the mutant enzymes were stably expressed and largely soluble at both 30 degrees C and 42 degrees C in vivo and none of the mutants was found to be TS in vitro. These findings suggest that these mutations may affect folding of the enzyme at elevated temperature in vivo. Both non-conservative and conservative substitutions occurred but were not correlated with severity of the mutation. Of the 12 residues identified, 11 are conserved between EcoRI and the isoschizomer RsrI (which shares 50% identity), a further indication that these residues are critical for EcoRI structure and function. Inspection of the 2.8 A resolution X-ray crystal structure of the wild-type EcoRI endonuclease-DNA complex revealed that: (1) the TS mutations cluster in one half of the globular enzyme; (2) several of the substituted residues interact with each other; (3) most mutations would be predicted to disrupt local structures; (4) two mutations may affect the dimer interface (G78D and A235E); (5) one mutation (P90S) occurred in a residue that is part of, or immediately adjacent to, the EcoRI active site and which is conserved in the distantly related EcoRV endonuclease. Finally, one class of mutants restricted phage in vivo and was active in vitro, whereas a second class did not restrict and was inactive in vitro. The two classes of mutants may differ in kinetic properties or cleavage mechanism. In summary, these mutations provide insights into EcoRI structure and function, and complement previous genetic, biochemical, and structural analyses.


Subject(s)
Deoxyribonuclease EcoRI/genetics , Deoxyribonuclease EcoRI/metabolism , Mutation , Bacteriophage lambda/growth & development , Crystallography, X-Ray , DNA Damage , DNA Mutational Analysis , DNA Repair , DNA, Bacterial/metabolism , Deoxyribonuclease EcoRI/chemistry , Escherichia coli/enzymology , Escherichia coli/growth & development , Models, Molecular , Temperature
19.
20.
J Bacteriol ; 178(7): 1936-45, 1996 Apr.
Article in English | MEDLINE | ID: mdl-8606168

ABSTRACT

The phage shock protein (psp) operon (pspABCE) of Escherichia coli is strongly induced in response to a variety of stressful conditions or agents such as filamentous phage infection, ethanol treatment, osmotic shock, heat shock, and prolonged incubation in stationary phase. Transcription of the psp operon is driven from a sigma54 promoter and stimulated by integration host factor. We report here the identification of a transcriptional activator gene, designated pspF, which controls expression of the psp operon in E. coli. The pspF gene was identified by random miniTn10-tet transposon mutagenesis. Insertion of the transposon into the pspF gene abolished sigma54-dependent induction of the psp operon. The pspF gene is closely linked to the psp operon and is divergently transcribed from one major and two minor sigma 70 promoters, pspF encodes a 37-kDa protein which belongs to the enhancer-binding protein family of sigma54 transcriptional activators. PspF contains a catalytic domain, which in other sigma54 activators would be the central domain, and a C-terminal DNA-binding domain but entirely lacks an N-terminal regulatory domain and is constitutively active. The insertion mutant pspF::mTn10-tet (pspF877) encodes a truncated protein (PspF delta HTH) that lacks the DNA-binding helix-turn-helix (HTH) motif. Although the central catalytic domain is intact, PspF delta HTH at physiological concentration cannot activate psp expression. In the absence of inducing stimuli, multicopy-plasmid-borne PspF or PspF delta HTH overcomes repression of the psp operon mediated by the negative regulator PspA.


Subject(s)
Bacterial Proteins/genetics , DNA-Binding Proteins , DNA-Directed RNA Polymerases/genetics , Escherichia coli Proteins , Escherichia coli/genetics , Heat-Shock Proteins/genetics , Sigma Factor/genetics , Trans-Activators/genetics , Amino Acid Sequence , Base Sequence , Chromosome Mapping , Chromosomes, Bacterial , DNA Nucleotidyltransferases/genetics , DNA, Bacterial , Gene Expression Regulation, Bacterial , Genetic Complementation Test , Molecular Sequence Data , Mutagenesis, Insertional , Operon , RNA Polymerase Sigma 54 , Transcription, Genetic , Transposases
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