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1.
Sci Rep ; 10(1): 8011, 2020 05 15.
Article in English | MEDLINE | ID: mdl-32415159

ABSTRACT

Cork is a water-impermeable, suberin-based material harboring lignin, (hemi)cellulose, and extractable small molecules (primarily triterpenoids). Extractables strongly influence the properties of suberin-based materials. Though these previous findings suggest a key role for triterpenoids in cork material quality, directly testing this idea is hindered in part because it is not known which genes control cork triterpenoid biosynthesis. Here, we used gas chromatography and mass spectrometry to determine that the majority (>85%) of non-polar extractables from cork were pentacyclic triterpenoids, primarily betulinic acid, friedelin, and hydroxy-friedelin. In other plants, triterpenoids are generated by oxidosqualene cyclases (OSCs). Accordingly, we mined Quercus suber EST libraries for OSC fragments to use in a RACE PCR-based approach and cloned three full-length OSC transcripts from cork (QsOSC1-3). Heterologous expression in Saccharomyces cerevisiae revealed that QsOSC1-3 respectively encoded enzymes with lupeol synthase, mixed α- and ß-amyrin synthase, and mixed ß-amyrin and friedelin synthase activities. These activities together account for the backbone structures of the major cork triterpenoids. Finally, we analyzed the sequences of QsOSC1-3 and other plant OSCs to identify residues associated with specific OSC activities, then combined this with analyses of Q. suber transcriptomic and genomic data to evaluate potential redundancies in cork triterpenoid biosynthesis.


Subject(s)
Intramolecular Transferases/metabolism , Quercus/metabolism , Triterpenes/metabolism , Biosynthetic Pathways , Computational Biology/methods , Enzyme Activation , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Plant , Intramolecular Transferases/genetics , Molecular Structure , Quercus/genetics , Structure-Activity Relationship , Triterpenes/chemistry
2.
Plant Sci ; 291: 110360, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31928669

ABSTRACT

Both suberin and its associated waxes contribute to the formation of apoplastic barriers that protect plants from the environment. Some transcription factors have emerged as regulators of the suberization process. The potato StNAC103 gene was reported as a repressor of suberin polyester and suberin-associated waxes deposition because its RNAi-mediated downregulation (StNAC103-RNAi) over-accumulated suberin and associated waxes in the tuber phellem concomitantly with the induction of representative biosynthetic genes. Here, to explore if other genes of the large NAC gene family participate to this repressive function, we extended the silencing to other NAC members by targeting the conserved NAC domain of StNAC103 (StNAC103-RNAi-c). Transcript profile of the StNAC103-RNAi-c phellem indicated that StNAC101 gene was an additional potential target. In comparison with StNAC103-RNAi, the silencing with StNAC103-RNAi-c construct resulted in a similar effect in suberin but yielded an increased load of associated waxes in tuber phellem, mainly alkanes and feruloyl esters. Globally, the chemical effects in both silenced lines are supported by the transcript accumulation profile of genes involved in the biosynthesis, transport and regulation of apoplastic lipids. In contrast, the genes of polyamine biosynthesis were downregulated. Altogether these results point out to StNAC101 as a candidate to repress the suberin-associated waxes.


Subject(s)
Gene Silencing , Lipids/genetics , Plant Proteins/genetics , Solanum tuberosum/genetics , Plant Proteins/metabolism , Solanum tuberosum/metabolism
3.
Phytochemistry ; 147: 30-48, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29288888

ABSTRACT

Potato native and wound healing periderms contain an external multilayered phellem tissue (potato skin) consisting of dead cells whose cell walls are impregnated with suberin polymers. The phellem provides physical and chemical barriers to tuber dehydration, heat transfer, and pathogenic infection. Previous RNAi-mediated gene silencing studies in native periderm have demonstrated a role for a feruloyl transferase (FHT) in suberin biosynthesis and revealed how its down-regulation affects both chemical composition and physiology. To complement these prior analyses and to investigate the impact of FHT deficiency in wound periderms, a bottom-up methodology has been used to analyze soluble tissue extracts and solid polymers concurrently. Multivariate statistical analysis of LC-MS and GC-MS data, augmented by solid-state NMR and thioacidolysis, yields two types of new insights: the chemical compounds responsible for contrasting metabolic profiles of native and wound periderms, and the impact of FHT deficiency in each of these plant tissues. In the current report, we confirm a role for FHT in developing wound periderm and highlight its distinctive features as compared to the corresponding native potato periderm.


Subject(s)
Plant Epidermis/metabolism , Solanum tuberosum/metabolism , Transferases/metabolism , Down-Regulation , Lipids , Multivariate Analysis , Transferases/deficiency
4.
Phytochem Anal ; 27(6): 326-335, 2016 Nov.
Article in English | MEDLINE | ID: mdl-27687607

ABSTRACT

INTRODUCTION: Protective plant lipophilic barriers such as suberin and cutin, with their associated waxes, are complex fatty acyl derived polyesters. Their precise chemical composition is valuable to understand the specific role of each compound to the physiological function of the barrier. OBJECTIVES: To develop a method for the compositional analysis of suberin and associated waxes by gas chromatography (GC) coupled to ion trap-mass spectrometry (IT-MS) using N-(tert-butyldimethylsilyl)-N-methyl-trifluoroacetamide (MTBSTFA) as sylilating reagent, and apply it to compare the suberin of the root and tuber periderm of potato (Solanum tuberosum). METHODOLOGY: Waxes and suberin monomers from root and periderm were extracted subsequently using organic solvents and by methanolysis, and subjected to MTBSTFA derivatisation. GC analyses of periderm extracts were used to optimise the chromatographic method and the compound identification. Quantitative data was obtained using external calibration curves. The method was fully validated and applied for suberin composition analyses of roots and periderm. RESULTS: Wax and suberin compounds were successfully separated and compound identification was based on the specific (M-57) and non-specific ions in mass spectra. The use of calibration curves built with different external standards provided quantitative accurate data and showed that suberin from root contains shorter chained fatty acyl derivatives and a relative predominance of α,ω-alkanedioic acids compared to that of the periderm. CONCLUSION: We present a method for the analysis of suberin and their associated waxes based on MTBSTFA derivatisation. Moreover, the characteristic root suberin composition may be the adaptive response to its specific regulation of permeability to water and gases. Copyright © 2016 John Wiley & Sons, Ltd.


Subject(s)
Lipids/analysis , Organosilicon Compounds/chemistry , Plant Roots/chemistry , Solanum tuberosum/chemistry , Calibration , Gas Chromatography-Mass Spectrometry
5.
J Exp Bot ; 67(18): 5415-5427, 2016 10.
Article in English | MEDLINE | ID: mdl-27520790

ABSTRACT

Suberin and wax deposited in the cork (phellem) layer of the periderm form the lipophilic barrier that protects mature plant organs. Periderm lipids have been widely studied for their protective function with regards to dehydration and for how they respond to environmental stresses and wounding. However, despite advances in the biosynthetic pathways of suberin and associated wax, little is known about the regulation of their deposition. Here, we report on a potato NAC transcription factor gene, StNAC103, induced in the tuber phellem (skin). The StNAC103 promoter is active in cells undergoing suberization such as in the basal layer of the phellem, but also in the root apical meristem. Gene silencing in potato periderm correlates with an increase in the suberin and wax load, and specifically in alkanes, ω-hydroxyacids, diacids, ferulic acid, and primary alcohols. Concomitantly, silenced lines also showed up-regulation of key genes related to the biosynthesis and transport of suberin and wax in the tuber periderm. Taken together, our results suggest that StNAC103 has a role in the tight regulation of the formation of apoplastic barriers and is, to the best of our knowledge, the first candidate gene to be identified as being involved in the repression of suberin and wax deposition.


Subject(s)
Lipids/genetics , Plant Tubers/metabolism , Solanum tuberosum/metabolism , Transcription Factors/physiology , Waxes/metabolism , Gene Expression Regulation, Plant/physiology , Gene Silencing/physiology , Genes, Plant/physiology , Lipids/biosynthesis , Plant Proteins/genetics , Plant Proteins/physiology , Plant Tubers/genetics , Solanum tuberosum/genetics , Transcription Factors/genetics
6.
Phytochemistry ; 117: 209-219, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26093489

ABSTRACT

Suberin is a biopolyester found in specialized plant tissues, both internal and external, with key frontier physiological functions. The information gathered so far from its monomer and oligomer composition, and in situ studies made by solid state techniques, haven't solved the enigma of how the suberin polyester is assembled as a macromolecule. To investigate how monomers are linked in suberin, we analyzed oligomer fragments solubilized by the partial depolymerization of suberin from potato (Solanum tuberosum) tuber periderms. The structure of the suberin oligomers, namely which monomers they included, and the type and frequency of the inter-monomer ester linkages, was assessed by ESI-MS/MS and high resolution NMR analysis. The analyzed potato periderms included the one from wild type (cv. Desirée) and from plants where suberin-biosynthesis genes were downregulated in chain elongation (StKCS6), ω-hydroxylation (CYP86A33) and feruloylation (FHT). Two building blocks were identified as possible key structures in the macromolecular development of the potato periderm suberin: glycerol - α,ω-diacid - glycerol, as the core of a continuous suberin aliphatic polyester; and glycerol - ω-hydroxyacid - ferulic acid, anchoring this polyaliphatic matrix at its periphery to the vicinal polyaromatics, through linking to ferulic acid. The silencing of the StKCS6 gene led to non-significant alterations in suberin structure, showing the relatively minor role of the very-long chain (>C28) fatty acids in potato suberin composition. The silencing of CYP86A33 gene impaired significantly suberin production and disrupted the biosynthesis of acylglycerol structures, proving the relevance of the latter and thus of the glycerol - α,ω-diacid - glycerol unit for the typical suberin lamellar organization. The silencing of the FHT gene led to a lower frequency of ferulate linkages in suberin polyester but to more polyphenolic guaiacyl units as seen by FTIR analyses in the intact polymer.


Subject(s)
Lipids/chemistry , Solanum tuberosum/genetics , Coumaric Acids/chemistry , Gene Expression Regulation, Plant , Glycerol/chemistry , Lipids/analysis , Lipids/genetics , Magnetic Resonance Spectroscopy , Phosphoenolpyruvate Sugar Phosphotransferase System , Plant Tubers , Plants, Genetically Modified , Polymerization , Solanum tuberosum/chemistry , Solanum tuberosum/metabolism , Spectrometry, Mass, Electrospray Ionization
7.
Biomacromolecules ; 15(3): 799-811, 2014 Mar 10.
Article in English | MEDLINE | ID: mdl-24502663

ABSTRACT

Periderms present in plant barks are essential protective barriers to water diffusion, mechanical breakdown, and pathogenic invasion. They consist of densely packed layers of dead cells with cell walls that are embedded with suberin. Understanding the interplay of molecular structure, dynamics, and biomechanics in these cell wall-associated insoluble amorphous polymeric assemblies presents substantial investigative challenges. We report solid-state NMR coordinated with FT-IR and tensile strength measurements for periderms from native and wound-healing potatoes and from potatoes with genetically modified suberins. The analyses include the intact suberin aromatic-aliphatic polymer and cell-wall polysaccharides, previously reported soluble depolymerized transmethylation products, and undegraded residues including suberan. Wound-healing suberized potato cell walls, which are 2 orders of magnitude more permeable to water than native periderms, display a strikingly enhanced hydrophilic-hydrophobic balance, a degradation-resistant aromatic domain, and flexibility suggestive of an altered supramolecular organization in the periderm. Suppression of ferulate ester formation in suberin and associated wax remodels the periderm with more flexible aliphatic chains and abundant aromatic constituents that can resist transesterification, attenuates cooperative hydroxyfatty acid motions, and produces a mechanically compromised and highly water-permeable periderm.


Subject(s)
Cell Wall/chemistry , Lipids/chemistry , Multiprotein Complexes/chemistry , Plants, Genetically Modified/chemistry , Molecular Structure , Solanum tuberosum/chemistry , Spectroscopy, Fourier Transform Infrared , Water/chemistry
8.
J Exp Bot ; 64(11): 3225-36, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23918964

ABSTRACT

The present study provides new insights on the role of the potato (Solanum tuberosum) suberin feruloyl transferase FHT in native and wound tissues, leading to conclusions about hitherto unknown properties of the phellogen. In agreement with the enzymatic role of FHT, it is shown that its transcriptional activation and protein accumulation are specific to tissues that undergo suberization such as the root boundary layers of the exodermis and the endodermis, along with the tuber periderm. Remarkably, FHT expression and protein accumulation within the periderm is restricted to the phellogen derivative cells with phellem identity. FHT levels in the periderm are at their peak near harvest during periderm maturation, with the phellogen becoming meristematically inactive and declining thereafter. However, periderm FHT levels remain high for several months after harvest, suggesting that the inactive phellogen retains the capacity to synthesize ferulate esters. Tissue wounding induces FHT expression and the protein accumulates from the first stages of the healing process onwards. FHT is up-regulated by abscisic acid and down-regulated by salicylic acid, emphasizing the complex regulation of suberin synthesis and wound healing. These findings open up new prospects important for the clarification of the suberization process and yield important information with regard to the skin quality of potatoes.


Subject(s)
Abscisic Acid/pharmacology , Plant Proteins/metabolism , Salicylates/pharmacology , Solanum tuberosum/metabolism , Gene Expression Regulation, Plant/drug effects , Plant Proteins/genetics
9.
Planta ; 233(5): 933-45, 2011 May.
Article in English | MEDLINE | ID: mdl-21249504

ABSTRACT

Potato (Solanum tuberosum) tubers are underground storage organs covered by the skin or periderm, a suberized layer that protects inner flesh from dehydration and pathogens. Understanding the molecular processes associated with periderm formation is of great importance for a better knowledge of this protective tissue and for improving the storage life of tubers. Here, to isolate new candidate genes for potato periderm, a suppression subtractive hybridization library from potato skin was performed. This library yielded a comprehensive list of 108 candidate genes that were manually sorted in functional categories according to the main cellular and metabolic processes in periderm. As expected, the list contains Suberin and wax genes, including some genes with a demonstrated role in the biosynthesis of these cell wall aliphatic compounds. Moreover, Regulation and Stress and defence genes are highly abundant in the library in general agreement with previous potato skin proteomic studies. The putative function of the genes in periderm is discussed.


Subject(s)
Lipids/genetics , Plant Proteins/genetics , Solanum tuberosum/genetics , Base Sequence , Cell Wall/genetics , Cell Wall/metabolism , DNA, Complementary/genetics , Expressed Sequence Tags , Gene Expression Regulation, Plant , Gene Library , Lipids/biosynthesis , Nucleic Acid Hybridization/methods , Plant Proteins/biosynthesis , Plant Tubers/genetics , Plant Tubers/metabolism , Proteomics , Solanum tuberosum/metabolism , Waxes/metabolism
10.
Plant Signal Behav ; 5(8): 953-8, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20657184

ABSTRACT

Plant cell walls are dramatically affected by suberin deposition, becoming an impermeable barrier to water and pathogens. Suberin is a complex layered heteropolymer that comprises both a poly(aliphatic) and a poly(aromatic) lignin-like domain. Current structural models for suberin attribute the crosslinking of aliphatic and aromatic domains within the typical lamellar ultrastructure of the polymer to esterified ferulate. BAHD feruloyl transferases involved in suberin biosynthesis have been recently characterized in Arabidopsis and potato (Solanum tuberosum). In defective mutants, suberin, even lacks most of the esterified ferulate, but maintains the typical lamellar ultrastructure. However, suberized tissues display increased water permeability, in spite of exhibiting a similar lipid load to wild type. Therefore, the role of ferulate in suberin needs to be reconsidered. Moreover, silencing the feruloyl transferase in potato turns the typical smooth skin of cv. Desirée into a rough scabbed skin distinctive of Russet varieties and impairs the normal skin maturation that confers resistance to skinning. Concomitantly to these changes, the skin of silenced potatoes shows an altered profile of soluble phenolics with the emergence of conjugated polyamines.


Subject(s)
Cell Wall/ultrastructure , Coumaric Acids/metabolism , Lipids/biosynthesis , Water/physiology , Acyltransferases/genetics , Arabidopsis/enzymology , Arabidopsis/genetics , Cell Wall/chemistry , Gene Expression Regulation, Plant , Gene Silencing , Plant Proteins/genetics , Polyamines/chemistry , Solanum tuberosum/enzymology , Solanum tuberosum/genetics
11.
Plant J ; 62(2): 277-90, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20088895

ABSTRACT

Suberin and waxes embedded in the suberin polymer are key compounds in the control of transpiration in the tuber periderm of potato (Solanum tuberosum). Suberin is a cell-wall biopolymer with aliphatic and aromatic domains. The aliphatic suberin consists of a fatty acid polyester with esterified ferulic acid, which is thought to play an important role in cross-linking to the aromatic domain. In potato, ferulic acid esters are also the main components of periderm wax. How these ferulate esters contribute to the periderm water barrier remains unknown. Here we report on a potato gene encoding a fatty omega-hydroxyacid/fatty alcohol hydroxycinnamoyl transferase (FHT), and study its molecular and physiological relevance in the tuber periderm by means of a reverse genetic approach. In FHT RNAi periderm, the suberin and its associated wax contained much smaller amounts of ferulate esters, in agreement with the in vitro ability of the FHT enzyme to conjugate ferulic acid with omega-hydroxyacid and fatty alcohols. FHT down-regulation did not affect the typical suberin lamellar ultrastructure but had significant effects on the anatomy, sealing properties and maturation of the periderm. The tuber skin became thicker and russeted, water loss was greatly increased, and maturation was prevented. FHT deficiency also induced accumulation of the hydroxycinnamic acid amides feruloyl and caffeoyl putrescine in the periderm. We discuss these results in relation to the role attributed to ferulates in suberin molecular architecture and periderm impermeability.


Subject(s)
Acyltransferases/metabolism , Lipids/biosynthesis , Plant Proteins/metabolism , Solanum tuberosum/enzymology , Waxes/metabolism , Acyltransferases/genetics , Coumaric Acids , DNA, Plant/genetics , Gene Expression Regulation, Plant , Genes, Plant , Phylogeny , Plant Proteins/genetics , Plant Tubers/chemistry , Plant Tubers/ultrastructure , RNA Interference , Sequence Alignment , Sequence Analysis, DNA , Solanum tuberosum/genetics
12.
J Exp Bot ; 60(2): 697-707, 2009.
Article in English | MEDLINE | ID: mdl-19112170

ABSTRACT

Very long chain aliphatic compounds occur in the suberin polymer and associated wax. Up to now only few genes involved in suberin biosynthesis have been identified. This is a report on the isolation of a potato (Solanum tuberosum) 3-ketoacyl-CoA synthase (KCS) gene and the study of its molecular and physiological relevance by means of a reverse genetic approach. This gene, called StKCS6, was stably silenced by RNA interference (RNAi) in potato. Analysis of the chemical composition of silenced potato tuber periderms indicated that StKCS6 down-regulation has a significant and fairly specific effect on the chain length distribution of very long-chain fatty acids (VLCFAs) and derivatives, occurring in the suberin polymer and peridermal wax. All compounds with chain lengths of C(28) and higher were significantly reduced in silenced periderms, whereas compounds with chain lengths of C(26) and lower accumulated. Thus, StKCS6 is preferentially involved in the formation of suberin and wax lipidic monomers with chain lengths of C(28) and higher. As a result, peridermal transpiration of the silenced lines was about 1.5-times higher than that of the wild type. Our results convincingly show that StKCS6 is involved in both suberin and wax biosynthesis and that a reduction of the monomeric carbon chain lengths leads to increased rates of peridermal transpiration.


Subject(s)
Gene Silencing , Lipids/chemistry , Plant Epidermis/genetics , Plant Proteins/genetics , Plant Transpiration , Solanum tuberosum/genetics , Waxes/chemistry , Down-Regulation , Gene Expression Regulation, Plant , Plant Epidermis/metabolism , Plant Epidermis/ultrastructure , Plant Proteins/isolation & purification , Plant Proteins/metabolism , RNA, Messenger/genetics , RNA, Messenger/metabolism , Solanum tuberosum/cytology , Water
13.
Plant Physiol ; 149(2): 1050-60, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19109416

ABSTRACT

Suberin is a cell wall lipid polyester found in the cork cells of the periderm offering protection against dehydration and pathogens. Its biosynthesis and assembly, as well as its contribution to the sealing properties of the periderm, are still poorly understood. Here, we report on the isolation of the coding sequence CYP86A33 and the molecular and physiological function of this gene in potato (Solanum tuberosum) tuber periderm. CYP86A33 was down-regulated in potato plants by RNA interference-mediated silencing. Periderm from CYP86A33-silenced plants revealed a 60% decrease in its aliphatic suberin load and greatly reduced levels of C18:1 omega-hydroxyacid (approximately 70%) and alpha,omega-diacid (approximately 90%) monomers in comparison with wild type. Moreover, the glycerol esterified to suberin was reduced by 60% in the silenced plants. The typical regular ultrastructure of suberin, consisting of dark and light lamellae, disappeared and the thickness of the suberin layer was clearly reduced. In addition, the water permeability of the periderm isolated from CYP86A33-silenced lines was 3.5 times higher than that of the wild type. Thus, our data provide convincing evidence for the involvement of omega-functional fatty acids in establishing suberin structure and function.


Subject(s)
Arabidopsis Proteins/genetics , Cytochrome P-450 Enzyme System/genetics , Gene Silencing , Lipids/chemistry , Solanum tuberosum/genetics , Water/metabolism , Amino Acid Sequence , Arabidopsis/enzymology , Arabidopsis/genetics , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Plant , Molecular Sequence Data , Oryza/enzymology , Oryza/genetics , Phylogeny , Plant Proteins/genetics , Plant Tubers/enzymology , Plant Tubers/genetics , Sequence Alignment , Sequence Homology, Amino Acid , Solanum tuberosum/enzymology
14.
Tree Physiol ; 28(5): 743-51, 2008 May.
Article in English | MEDLINE | ID: mdl-18316306

ABSTRACT

The molecular processes underlying cork biosynthesis and differentiation are mostly unknown. Recently, a list of candidate genes for cork biosynthesis and regulation was made available opening new possibilities for molecular studies in cork oak (Quercus suber L.). Based on this list, we analyzed the seasonal variation in mRNA abundance in cork tissue of selected genes by real time reverse-transcriptase polymerase chain reaction (RT-PCR). Relative transcript abundance was evaluated by principal component analysis and genes were clustered in several functional subgroups. Structural genes of suberin pathways such as CYP86A1, GPAT and HCBT, and regulatory genes of the NAM and WRKY families showed highest transcript accumulation in June, a crucial month for cork development. Other cork structural genes, such as FAT and F5H, were significantly correlated with temperature and relative humidity. The stress genes HSP17.4 and ANN were strongly positively correlated to temperature, in accord with their protective role.


Subject(s)
Gene Expression Profiling/methods , Quercus/genetics , Reverse Transcriptase Polymerase Chain Reaction/methods , Seasons , Gene Expression Regulation, Plant , Genes, Plant/genetics , Plant Proteins/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism
15.
J Biol Inorg Chem ; 12(6): 867-82, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17503092

ABSTRACT

In this work, we have analyzed both at stoichiometric and at conformational level the Cd(II)-binding features of a type 2 plant metallothionein (MT) (the cork oak, Quercus suber, QsMT). To this end four peptides, the wild-type QsMT and three constructs previously engineered to characterize its Zn(II)- and Cu(I)-binding behaviour, were heterologously produced in Escherichia coli cultures supplemented with Cd(II), and the corresponding complexes were purified up to homogeneity. The Cd(II)-binding ability of these recombinant peptides was determined through the chemical, spectroscopic and spectrometric characterization of the recovered clusters. Recombinant synthesis of the four QsMT peptides in cadmium-rich media rendered complexes with a higher metal content than those obtained from zinc-supplemented cultures and, consequently, the recovered Cd(II) species are nonisostructural to those of Zn(II). Also of interest is the fact that three out of the four peptides yielded recombinant preparations that included S(2-)-containing Cd(II) complexes as major species. Subsequently, the in vitro Zn(II)/Cd(II) replacement reactions were studied, as well as the in vitro acid denaturation and S(2-) renaturation reactions. Finally, the capacity of the four peptides for preventing cadmium deleterious effects in yeast cells was tested through complementation assays. Consideration of all the results enables us to suggest a hairpin folding model for this typical type 2 plant Cd(II)-MT complex, as well as a nonnegligible role of the spacer in the detoxification function of QsMT towards cadmium.


Subject(s)
Cadmium/chemistry , Metallothionein/metabolism , Quercus , Glutathione , Inactivation, Metabolic , Metallothionein/chemistry , Phytochelatins , Plant Proteins/chemistry , Plant Proteins/metabolism , Protein Binding , Protein Conformation , Recombinant Proteins
16.
Plant Physiol ; 144(1): 419-31, 2007 May.
Article in English | MEDLINE | ID: mdl-17351057

ABSTRACT

Cork (phellem) is a multilayered dead tissue protecting plant mature stems and roots and plant healing tissues from water loss and injuries. Cork cells are made impervious by the deposition of suberin onto cell walls. Although suberin deposition and cork formation are essential for survival of land plants, molecular studies have rarely been conducted on this tissue. Here, we address this question by combining suppression subtractive hybridization together with cDNA microarrays, using as a model the external bark of the cork tree (Quercus suber), from which bottle cork is obtained. A suppression subtractive hybridization library from cork tree bark was prepared containing 236 independent sequences; 69% showed significant homology to database sequences and they corresponded to 135 unique genes. Out of these genes, 43.5% were classified as the main pathways needed for cork biosynthesis. Furthermore, 19% could be related to regulatory functions. To identify genes more specifically required for suberin biosynthesis, cork expressed sequence tags were printed on a microarray and subsequently used to compare cork (phellem) to a non-suberin-producing tissue such as wood (xylem). Based on the results, a list of candidate genes relevant for cork was obtained. This list includes genes for the synthesis, transport, and polymerization of suberin monomers such as components of the fatty acid elongase complexes, ATP-binding cassette transporters, and acyltransferases, among others. Moreover, a number of regulatory genes induced in cork have been identified, including MYB, No-Apical-Meristem, and WRKY transcription factors with putative functions in meristem identity and cork differentiation.


Subject(s)
Cell Differentiation , Genomics/methods , Lipids/biosynthesis , Plant Proteins/genetics , Quercus/genetics , Biological Transport/genetics , Cell Wall/metabolism , Expressed Sequence Tags , Gene Expression Profiling , Molecular Sequence Data , Nucleic Acid Hybridization/methods , Oligonucleotide Array Sequence Analysis , Plant Proteins/metabolism , Plant Proteins/physiology , Quercus/cytology , Quercus/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Wood/anatomy & histology , Wood/genetics , Wood/metabolism
17.
Biochimie ; 88(6): 583-93, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16377055

ABSTRACT

Plant metallothioneins (MTs) differ from animal MTs by a peculiar sequence organization consisting of two short cysteine-rich terminal domains linked by a long cysteine-devoid spacer. The role of the plant MT domains in the protein structure and functionality is largely unknown. Here, we investigate the separate domain contribution to the in vivo binding of Zn and Cu and to confer metal tolerance to CUP1-null yeast cells of a plant type 2 MT (QsMT). For this purpose, we obtained three recombinant peptides that, respectively, correspond to the single N-terminal (N25) and C-terminal (C18) cysteine-rich domains of QsMT, and a chimera in which the spacer is replaced with a four-glycine bridge (N25-C18). The metal-peptide preparations recovered from Zn- or Cu-enriched cultures were characterized by ESI-MS, ICP-OES and CD and UV-vis spectroscopy and data compared to full length QsMT. Results are consistent with QsMT giving rise to homometallic Zn- or Cu-MT complexes according to a hairpin model in which the two Cys-rich domains interact to form a cluster. In this model the spacer region does not contribute to the metal coordination. However, our data from Zn-QsMT (but not from Cu-QsMT) support a fold of the spacer involving some interaction with the metal core. On the other hand, results from functional complementation assays in endogenous MT-defective yeast cells suggest that the spacer region may play a role in Cu-QsMT stability or subcellular localization. As a whole, our results provide the first insight into the structure/function relationship of plant MTs using the analysis of the separate domain abilities to bind physiological metals.


Subject(s)
Metallothionein/chemistry , Metallothionein/metabolism , Metals/metabolism , Plant Proteins/chemistry , Plant Proteins/metabolism , Protein Folding , Base Sequence , Binding Sites , Chelating Agents/metabolism , Copper/metabolism , Molecular Sequence Data , Plants , Protein Binding , Zinc/metabolism
18.
J Exp Bot ; 55(408): 2483-93, 2004 Dec.
Article in English | MEDLINE | ID: mdl-15448172

ABSTRACT

Expression of plant metallothionein genes has been reported in a variety of senescing tissues, such as leaves and stems, ripening fruits, and wounded tissues, and has been proposed to function in both metal chaperoning and scavenging of reactive oxygen species. In this work, it is shown that MT is also associated with suberization, after identifying a gene actively transcribed in Quercus suber cork cells as a novel MT. This cDNA, isolated from a phellem cDNA library, encodes a MT that belongs to type 2 plant MTs (QsMT). Expression of the QsMT cDNA in E. coli grown in media supplemented with Zn, Cd, or Cu has yielded recombinant QsMT. Characterization of the respective metal aggregates agrees well with a copper-related biological role, consistent with the capacity of QsMT to restore copper tolerance to a MT-deficient, copper-sensitive yeast mutant. Furthermore, in situ hybridization results demonstrate that RNA expression of QsMT is mainly observed under conditions related to oxidative stress, either endogenous, as found in cork or in actively proliferating tissues, or exogenous, for example, in response to H(2)O(2) or paraquat treatments. The putative role of QsMT in oxidative stress, both as a free radical scavenger via its sulphydryl groups or as a copper chelator is discussed.


Subject(s)
Metallothionein/metabolism , Oxidative Stress/physiology , Plant Proteins/metabolism , Quercus/metabolism , Amino Acid Sequence , Base Sequence , Copper/metabolism , Copper/toxicity , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Metallothionein/genetics , Molecular Sequence Data , Organisms, Genetically Modified , Phylogeny , Plant Proteins/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/metabolism , Tissue Distribution/physiology
19.
Planta ; 217(5): 813-9, 2003 Sep.
Article in English | MEDLINE | ID: mdl-12743825

ABSTRACT

We report on a new cDNA clone (Qshsp10.4-CI) of a Quercus suber L. class-CI small heat-shock protein (sHsp) obtained from cork (phellem), a highly oxidatively stressed plant tissue. The deduced gene product lacks the C-terminal extension and the consensus I region of the alpha-crystallin domain, being the most C-terminally truncated sHsp reported to date. In an attempt to prove that a protective function is possible for such a truncated sHsp, we overexpressed in Escherichia coli three recombinant sHsp-CIs, one (rQsHsp10.4-CI) showing the same truncation as Qshsp10.4-CI, a second (rN49) lacking the whole alpha-crystallin domain, and a third (rN153) consisting of a full-length sHsp-CI. The overexpression of rN153 and, remarkably, rQsHsp10.4-CI but not rN49 enhanced cell viability under high temperature and, interestingly, under oxidative stress. These results show that the C-terminal extension and the consensus I region of the alpha-crystallin domain are dispensable, but amino acids 1-41 of the alpha-crystallin domain (including the consensus II region) are essential for the protective activity of sHsp-CIs. On the other hand, two-dimensional immunodetection patterns showed accumulation of ca. 10-kDa sHsp-CI immunorelated polypeptides in cork and other oxidatively stressed tissues but not in control and heat-stressed tissues. We discuss the possible role of highly truncated sHsps in relation to oxidative stress.


Subject(s)
Escherichia coli/genetics , Heat-Shock Proteins/genetics , Plant Proteins/genetics , Quercus/genetics , Amino Acid Sequence , Cell Division/genetics , Cloning, Molecular , DNA, Complementary/chemistry , DNA, Complementary/genetics , DNA, Plant/chemistry , DNA, Plant/genetics , Electrophoresis, Gel, Two-Dimensional , Escherichia coli/growth & development , Escherichia coli/metabolism , Heat-Shock Proteins/metabolism , Hot Temperature , Immunoelectrophoresis, Two-Dimensional , Molecular Sequence Data , Oxidative Stress , Plant Proteins/metabolism , Quercus/metabolism , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Sequence Analysis, DNA , Sequence Homology, Amino Acid
20.
J Exp Bot ; 53(373): 1445-52, 2002 Jun.
Article in English | MEDLINE | ID: mdl-12021292

ABSTRACT

The timing and tissue localization of small heat shock proteins (sHSPs) during cork oak somatic embryo development was investigated under normal growing culture conditions and in response to stress. Western blot analyses using polyclonal antibodies raised against cork oak recombinant HSP17 showed a transient accumulation of class I sHSPs during somatic embryo maturation and germination. Moreover, the amount of protein increased at all stages of embryo development in response to exogenous stress. The developmentally accumulated proteins localized to early differentiating, but not the highly dividing, regions of the root and shoot apical meristems. By contrast, these highly dividing regions were strongly immunostained after heat stress. Findings support the hypothesis of a distinct control for developmentally and stress-induced accumulation of class I sHSPs. The possible role of sHSPs is discussed in relation to their tissue specific localization.


Subject(s)
Adaptation, Physiological/physiology , Heat-Shock Proteins/metabolism , Quercus/growth & development , Blotting, Western , Cell Differentiation/physiology , Cold Temperature , Culture Techniques , Electrophoresis, Gel, Two-Dimensional , Hot Temperature , Immunohistochemistry , Meristem/chemistry , Meristem/cytology , Meristem/growth & development , Molecular Weight , Plant Roots/chemistry , Plant Roots/growth & development , Quercus/cytology , Quercus/embryology , Stress, Mechanical
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