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1.
Euro Surveill ; 29(21)2024 May.
Article in English | MEDLINE | ID: mdl-38785087

ABSTRACT

An outbreak of hepatitis A is ongoing in Portugal, with 71 confirmed cases from 7 October 2023 to 24 April 2024. Most cases are male, aged 18-44 years, with many identifying as men who have sex with men (MSM) and reported as suspected sexual transmission. Phylogenetic analysis identified the subgenotype IA, VRD 521-2016 strain, last observed in an MSM-associated multi-country outbreak in 2016 to 2018. We wish to alert colleagues in other countries to investigate potential similar spread.


Subject(s)
Disease Outbreaks , Genotype , Hepatitis A , Homosexuality, Male , Phylogeny , Humans , Male , Portugal/epidemiology , Hepatitis A/epidemiology , Hepatitis A/transmission , Homosexuality, Male/statistics & numerical data , Adult , Adolescent , Young Adult , Hepatitis A virus/genetics , Hepatitis A virus/isolation & purification , Hepatitis A virus/classification , Middle Aged , Sexual Behavior , Female , Contact Tracing
2.
Epidemiol Infect ; 152: e78, 2024 May 06.
Article in English | MEDLINE | ID: mdl-38705587

ABSTRACT

In September 2023, the UK Health Security Agency identified cases of Salmonella Saintpaul distributed across England, Scotland, and Wales, all with very low genetic diversity. Additional cases were identified in Portugal following an alert raised by the United Kingdom. Ninety-eight cases with a similar genetic sequence were identified, 93 in the United Kingdom and 5 in Portugal, of which 46% were aged under 10 years. Cases formed a phylogenetic cluster with a maximum distance of six single nucleotide polymorphisms (SNPs) and average of less than one SNP between isolates. An outbreak investigation was undertaken, including a case-control study. Among the 25 UK cases included in this study, 13 reported blood in stool and 5 were hospitalized. One hundred controls were recruited via a market research panel using frequency matching for age. Multivariable logistic regression analysis of food exposures in cases and controls identified a strong association with cantaloupe consumption (adjusted odds ratio: 14.22; 95% confidence interval: 2.83-71.43; p-value: 0.001). This outbreak, together with other recent national and international incidents, points to an increase in identifications of large outbreaks of Salmonella linked to melon consumption. We recommend detailed questioning and triangulation of information sources to delineate consumption of specific fruit varieties during Salmonella outbreaks.


Subject(s)
Disease Outbreaks , Salmonella Food Poisoning , Humans , Portugal/epidemiology , Male , Adult , Female , United Kingdom/epidemiology , Middle Aged , Child , Adolescent , Case-Control Studies , Young Adult , Aged , Child, Preschool , Salmonella Food Poisoning/epidemiology , Salmonella Food Poisoning/microbiology , Cucumis melo/microbiology , Salmonella/genetics , Salmonella/isolation & purification , Salmonella/classification , Infant , Aged, 80 and over , Phylogeny
3.
Methods Mol Biol ; 2316: 211-217, 2022.
Article in English | MEDLINE | ID: mdl-34845697

ABSTRACT

Quantitative polymerase chain reaction (qPCR) and reverse transcription (RT)-qPCR have now become the gold standard for molecular diagnostics because of its sensitivity, specificity, and reproducibility. In addition, qPCR diagnostics are flexible because they can be scaled for high- or low-throughput applications. Here we describe an optimized assay and workflow for the universal detection of eight citrus viroid species and their variants by RT-qPCR. The assay allows for quick and efficient molecular detection of viroids without the need to run RT-qPCR for each individual viroid species.


Subject(s)
Citrus , Viroids , Plant Diseases , Reproducibility of Results , Reverse Transcriptase Polymerase Chain Reaction , Viroids/genetics
4.
Euro Surveill ; 26(16)2021 04.
Article in English | MEDLINE | ID: mdl-33890566

ABSTRACT

We compared 19,207 cases of SARS-CoV-2 variant B.1.1.7/S gene target failure (SGTF), 436 B.1.351 and 352 P.1 to non-variant cases reported by seven European countries. COVID-19 cases with these variants had significantly higher adjusted odds ratios for hospitalisation (B.1.1.7/SGTF: 1.7, 95% confidence interval (CI): 1.0-2.9; B.1.351: 3.6, 95% CI: 2.1-6.2; P.1: 2.6, 95% CI: 1.4-4.8) and B.1.1.7/SGTF and P.1 cases also for intensive care admission (B.1.1.7/SGTF: 2.3, 95% CI: 1.4-3.5; P.1: 2.2, 95% CI: 1.7-2.8).


Subject(s)
COVID-19 , SARS-CoV-2 , Critical Care , Europe/epidemiology , Humans
5.
Ann Dyslexia ; 70(1): 43-61, 2020 04.
Article in English | MEDLINE | ID: mdl-32096102

ABSTRACT

The present study aimed to investigate the double-deficit hypothesis (DDH) in an orthography of intermediate depth. Eighty-five European Portuguese-speaking children with developmental dyslexia, aged 7 to 12, were tested on measures of phonological awareness (PA), naming speed (NS), reading, and spelling. The results indicated that PA and NS were not significantly correlated, and that NS predicts reading fluency (but not reading accuracy and spelling) beyond what is accounted for by PA. Although the majority of the children with developmental dyslexia have double deficit (62.4%), some children have a single phonological deficit (24.7%) or a single NS deficit (8.2%). Children with a double deficit were not more impaired in reading fluency, reading accuracy, and spelling than both single-deficit subtypes. In conclusion, the findings of the present study are partially consistent with the DDH and provide evidence for the multifactorial model of developmental dyslexia. Implications of the DDH for an orthography of intermediate depth are emphasized.


Subject(s)
Dyslexia/physiopathology , Dyslexia/psychology , Phonetics , Reading , Awareness/physiology , Child , Dyslexia/epidemiology , Female , Humans , Language , Language Tests , Male , Portugal/epidemiology
6.
J Clin Exp Neuropsychol ; 39(3): 296-312, 2017 Apr.
Article in English | MEDLINE | ID: mdl-27617883

ABSTRACT

INTRODUCTION: This study aimed to investigate the neurocognitive functioning of children with developmental dyslexia (DD) and attention-deficit/hyperactivity disorder (ADHD). METHOD: Four groups of children between the ages of 8 and 10 years participated in the study: typically developing children (TDC; N = 34), children with DD-only (N = 32), children with ADHD-only (N = 32), and children with DD+ADHD (N = 18). RESULTS: Children with DD and ADHD exhibited significant weaknesses on almost all neurocognitive measures compared with TDC. Large effect sizes were observed for naming speed and phonological awareness. The comorbid group showed deficits consistent with both DD and ADHD without additional impairments. Results from binary logistic regression and receiver-operating characteristic (ROC) curve analyses suggested that some neurocognitive measures revealed an adequate sensitivity for the clinical diagnosis of both neurodevelopmental disorders. Specifically, naming speed and phonological awareness were the strongest predictors to correctly discriminate both disorders. CONCLUSIONS: Taken together, the results lend support to the multiple cognitive deficit hypothesis showing a considerable overlap of neurocognitive deficits between both disorders.


Subject(s)
Attention Deficit Disorder with Hyperactivity/psychology , Cognition Disorders/diagnosis , Cognition/physiology , Dyslexia/psychology , Attention Deficit Disorder with Hyperactivity/complications , Attention Deficit Disorder with Hyperactivity/diagnosis , Child , Cognition Disorders/complications , Cognition Disorders/psychology , Dyslexia/complications , Dyslexia/diagnosis , Female , Humans , Male , Neuropsychological Tests
7.
Dyslexia ; 21(1): 60-79, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25530196

ABSTRACT

This study analysed the performance of phonological processing, the diagnostic accuracy and the influence on reading in children who were native speakers of an orthography of intermediate depth. Portuguese children with developmental dyslexia (DD; N=24; aged 10-12 years), chronological age (CA)-matched controls (N=24; aged 10-12 years) and reading level (RL)-matched controls (N=24; aged 7-9 years) were tested on measures of phonological processing (phonological awareness, naming speed and verbal short-term memory) and reading. The results indicated that the children with DD performed significantly poorer in all measures compared with the CA and RL. Phonological awareness and naming speed showed a high accuracy (receiver operating characteristics curve analysis) for discriminating the children with DD from the CA and RL, whereas the presence of abnormally low scores in phonological awareness and naming speed was more frequent in the DD group than in the controls and the normative population. Hierarchical linear regression analyses revealed that phonological awareness was the most important predictor of all reading accuracy measures, whereas naming speed was particularly related to text reading fluency.


Subject(s)
Cognition/physiology , Dyslexia/diagnosis , Memory, Short-Term/physiology , Reading , Adolescent , Case-Control Studies , Child , Dyslexia/physiopathology , Female , Humans , Male , Phonetics , ROC Curve
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