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1.
Braz J Med Biol Res ; 53(11): e9056, 2020.
Article in English | MEDLINE | ID: mdl-33053095

ABSTRACT

Cryptococcal meningitis affects normal hosts and immunocompromised patients exhibiting high mortality rates. The objective of this study was to design two molecular assays, visible microarray platforms and loop-mediated isothermal amplification (LAMP), to identify Cryptococcus spp. and the species neoformans and gattii from the cerebral spinal fluid (CSF). To identify Cryptococcus and the two species, we designed two microarrays DNA platforms based on the internal transcribed spacer (ITS) region and CAP59 gene and LAMP assays specific for Cryptococcus species. The assays were tested using CSF from patients with cryptococcal meningitis. CSF from patients with cryptococcal meningitis was cultured in Sabouraud culture medium, and the Cryptococcus spp. grown in the culture medium were also tested for LAMP and microarray platforms. The results were compared to DNA sequencing of the same genetic regions. A total of 133 CSF samples were studied. Eleven CSFs were positive for Cryptococcus (9 C. neoformans and 2 C. gattii), 15 were positive for bacteria, and 107 were negative. The CAP59 platform correctly identified 73% of the CSF samples, while the ITS platform identified 45.5%. CAP59 platform correctly identified 100% of the Cryptococcus isolates, and ITS platform identified 70%. The two sets of LAMP primers correctly identified 100% of the Cryptococcus isolates. However, for CSF samples, the amplification occurred only in 55.5% of C. neoformans. The methodologies were reliable in the identification of Cryptococcus species, mainly for isolates from culture medium, and they might be applied as adjunctive tests to identify Cryptococcus species.


Subject(s)
Cryptococcus neoformans , Meningitis, Cryptococcal , Cryptococcus neoformans/genetics , Humans , Meningitis, Cryptococcal/diagnosis , Nucleic Acid Amplification Techniques , Oligonucleotide Array Sequence Analysis , Sequence Analysis, DNA
2.
Braz. j. med. biol. res ; 53(11): e9056, 2020. tab, graf
Article in English | LILACS, Coleciona SUS | ID: biblio-1132484

ABSTRACT

Cryptococcal meningitis affects normal hosts and immunocompromised patients exhibiting high mortality rates. The objective of this study was to design two molecular assays, visible microarray platforms and loop-mediated isothermal amplification (LAMP), to identify Cryptococcus spp. and the species neoformans and gattii from the cerebral spinal fluid (CSF). To identify Cryptococcus and the two species, we designed two microarrays DNA platforms based on the internal transcribed spacer (ITS) region and CAP59 gene and LAMP assays specific for Cryptococcus species. The assays were tested using CSF from patients with cryptococcal meningitis. CSF from patients with cryptococcal meningitis was cultured in Sabouraud culture medium, and the Cryptococcus spp. grown in the culture medium were also tested for LAMP and microarray platforms. The results were compared to DNA sequencing of the same genetic regions. A total of 133 CSF samples were studied. Eleven CSFs were positive for Cryptococcus (9 C. neoformans and 2 C. gattii), 15 were positive for bacteria, and 107 were negative. The CAP59 platform correctly identified 73% of the CSF samples, while the ITS platform identified 45.5%. CAP59 platform correctly identified 100% of the Cryptococcus isolates, and ITS platform identified 70%. The two sets of LAMP primers correctly identified 100% of the Cryptococcus isolates. However, for CSF samples, the amplification occurred only in 55.5% of C. neoformans. The methodologies were reliable in the identification of Cryptococcus species, mainly for isolates from culture medium, and they might be applied as adjunctive tests to identify Cryptococcus species.


Subject(s)
Humans , Meningitis, Cryptococcal/diagnosis , Cryptococcus neoformans/genetics , Sequence Analysis, DNA , Oligonucleotide Array Sequence Analysis , Nucleic Acid Amplification Techniques
3.
Infect Genet Evol ; 43: 245-51, 2016 09.
Article in English | MEDLINE | ID: mdl-27223631

ABSTRACT

Paracoccidioidomycosis (PCM) is a systemic chronic mycosis, endemic in Latin America, especially Brazil, and is the eighth leading cause of death among chronic and recurrent infectious diseases. PCM infection is characterized by the presence of Th1 immune response; the acute form, by a mixed Th2/Th9, while the chronic form is characterized by Th17/Th22 profiles. The occurrence and severity of human PCM may also be associated with genetic factors such as single nucleotide polymorphisms (SNP) on cytokines encoding genes. We investigated the association between these polymorphisms and the different clinical forms of PCM. We included 156 patients with PCM (40 with the acute form, 99 with the chronic multifocal and 17 with the chronic unifocal form) and assayed their DNA samples for IFNG +874 T/A SNP by PCR-ARMS (Amplification Refractory Mutational System), IL12B +1188 A/C SNP on 3' UTR and IL12RB1 641 A/G SNP on exon 7 by PCR-RFLP (Restriction Fragment Length Polymorphism). We found similar genotypic and allelic frequencies of the investigated SNPs among the clinical forms of PCM. Considering male patients, the IL12RB1 641 AA genotype was more frequent in the chronic multifocal form while heterozygosis was in the chronic unifocal form of PCM (p=0.048). Although our data suggest that the AA genotype (IL12RB1) may be associated with the more disseminated chronic disease, more patients of the chronic unifocal PCM group need to be analyzed as well as the secretion patterns of IFN-γ combined with the IL-12Rß1 expression for a better comprehension of this association.


Subject(s)
Host-Pathogen Interactions , Interferon-gamma/genetics , Interleukin-12 Subunit p40/genetics , Paracoccidioidomycosis/genetics , Polymorphism, Single Nucleotide , Receptors, Interleukin-12/genetics , 3' Untranslated Regions , Acute Disease , Adolescent , Adult , Aged , Alleles , Brazil , Child , Chronic Disease , Female , Gene Expression , Gene Frequency , Genotype , Humans , Interferon-gamma/immunology , Interleukin-12 Subunit p40/immunology , Male , Middle Aged , Paracoccidioides/growth & development , Paracoccidioidomycosis/immunology , Paracoccidioidomycosis/microbiology , Paracoccidioidomycosis/pathology , Polymorphism, Restriction Fragment Length , Receptors, Interleukin-12/immunology , Sex Factors
4.
Eur J Clin Microbiol Infect Dis ; 30(3): 369-74, 2011 Mar.
Article in English | MEDLINE | ID: mdl-20972808

ABSTRACT

The purpose of this article was to describe a 2.5-year interventional program designed to control the dissemination after a large hospital outbreak of vancomycin-resistant enterococci (VRE) in a tertiary-care university hospital. A VRE working group was designated to work specifically on controlling VRE intrahospital dissemination after the detection of the first VRE infection at in our hospital in June 2007. The intervention consisted in the interruption of new admissions during a period of 15 days and closure of the index case unit, microbiological surveillance of rectal swabs for VRE, cohorting patients and staff, immediate application of contact precautions, and continuous education. From July 2007 to December 2009, 8,692 rectal swabs were cultured for VRE and 321 (3.7%) were positive. An expressive reduction of the detection of new positive rectal swabs cultures was seen during the year 2009 (1.5%) when compared to 2008 (4.2%) and 2007 (7.2%) (p < 0.005). The annual ratio of VRE per 1,000 admissions reduced from 20.3 in 2007 to 10.07 and 3.82 in 2008 and 2009, respectively (p < 0.001). The continuous microbiologic surveillance for VRE and strict and prompt contact precautions for VRE patients were the fundamental aids in the control of VRE.


Subject(s)
Cross Infection/prevention & control , Disease Outbreaks/prevention & control , Enterococcus/drug effects , Gram-Positive Bacterial Infections/prevention & control , Infection Control , Vancomycin Resistance , Brazil/epidemiology , Cross Infection/epidemiology , Cross Infection/microbiology , Electrophoresis, Gel, Pulsed-Field , Gram-Positive Bacterial Infections/epidemiology , Gram-Positive Bacterial Infections/microbiology , Hospitals, Teaching , Humans , Population Surveillance
5.
Clin Microbiol Infect ; 15(4): 364-71, 2009 Apr.
Article in English | MEDLINE | ID: mdl-19431223

ABSTRACT

The objective of this study was to evaluate Candida oral colonization in human immunodeficiency virus (HIV)-infected patients undergoing long-term highly active antiretroviral therapy (ARV). The cross-sectional study included 331 HIV patients, diagnosed from 1983 to 2003. Oral swabs were performed, and Candida species were determined using ID 32C. Isolates were tested for antifungal susceptibility. Clinical and laboratory data were collected to identify the association with Candida colonization. In total, 161 Candida isolates were detected among 147 of the 331 patients (44%), independently of the time when HIV infection was diagnosed. Candida albicans strains represented 137 (85%) of the isolates, and were susceptible to all of the tested antifungal drugs. Among the non-C. albicans strains, six isolates were dose-dependently susceptible to fluconazole, nine to itraconazole, and seven to ketoconazole. The isolation of Candida was significantly higher in patients with virological failure (83/147; p 0.0002) and CD4(+) T-lymphocyte counts <200 cells/mm(3) (30/83; p 0.0003). Recovery of Candida in the oral cavity was independent of protease inhibitor (PI) usage (p 0.60). Colonized patients typically underwent salvage therapy (p 0.003), and had more episodes of opportunistic fungal infections (p 0.046) and malignancies (p 0.004).Oral Candida colonization in patients under ARV therapy was associated with the immunosupressed status of HIV-infected patients, i.e. low number of CD4(+) T-cells per cubic millimetre, failure of ARV therapy (salvage therapy), and higher number of opportunistic infections and malignancies. Despite the fact that PIs have in vitro antifungal activity, the use of this class of antiretroviral agent did not influence the presence of Candida in the oral cavity of AIDS patients.


Subject(s)
Candidiasis, Oral/epidemiology , Candidiasis, Oral/microbiology , HIV Infections/complications , HIV Infections/virology , Adult , Anti-HIV Agents/therapeutic use , Antifungal Agents/pharmacology , Antiretroviral Therapy, Highly Active , CD4 Lymphocyte Count , Candida/classification , Candida/drug effects , Candida/isolation & purification , Candidiasis, Oral/pathology , Cross-Sectional Studies , Female , HIV/isolation & purification , HIV Infections/drug therapy , HIV Infections/pathology , Humans , Immunocompromised Host , Male , Microbial Sensitivity Tests , Neoplasms/epidemiology , Salvage Therapy , Treatment Failure , Viral Load
6.
Braz J Med Biol Res ; 42(3): 294-8, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19287909

ABSTRACT

The skin and mucous membranes of healthy subjects are colonized by strains of Staphylococcus epidermidis showing a high diversity of genomic DNA polymorphisms. Prolonged hospitalization and the use of invasive procedures promote changes in the microbiota with subsequent colonization by hospital strains. We report here a patient with prolonged hospitalization due to chronic pancreatitis who was treated with multiple antibiotics, invasive procedures and abdominal surgery. We studied the dynamics of skin colonization by S. epidermidis leading to the development of catheter-related infections and compared the genotypic profile of clinical and microbiota strains by pulsed field gel electrophoresis. During hospitalization, the normal S. epidermidis skin microbiota exhibiting a polymorphic genomic DNA profile was replaced with a hospital-acquired biofilm-producer S. epidermidis strain that subsequently caused repetitive catheter-related infections.


Subject(s)
Catheter-Related Infections/microbiology , Cross Infection/microbiology , Staphylococcal Infections/microbiology , Staphylococcus epidermidis/isolation & purification , DNA, Bacterial/genetics , Electrophoresis, Gel, Pulsed-Field , Genotype , Humans , Length of Stay , Male , Microbial Sensitivity Tests , Middle Aged , Pancreatitis, Chronic/surgery , Staphylococcus epidermidis/drug effects , Staphylococcus epidermidis/genetics
7.
Braz. j. med. biol. res ; 42(3): 294-298, Mar. 2009. ilus, tab
Article in English | LILACS | ID: lil-507342

ABSTRACT

The skin and mucous membranes of healthy subjects are colonized by strains of Staphylococcus epidermidis showing a high diversity of genomic DNA polymorphisms. Prolonged hospitalization and the use of invasive procedures promote changes in the microbiota with subsequent colonization by hospital strains. We report here a patient with prolonged hospitalization due to chronic pancreatitis who was treated with multiple antibiotics, invasive procedures and abdominal surgery. We studied the dynamics of skin colonization by S. epidermidis leading to the development of catheter-related infections and compared the genotypic profile of clinical and microbiota strains by pulsed field gel electrophoresis. During hospitalization, the normal S. epidermidis skin microbiota exhibiting a polymorphic genomic DNA profile was replaced with a hospital-acquired biofilm-producer S. epidermidis strain that subsequently caused repetitive catheter-related infections.


Subject(s)
Humans , Male , Middle Aged , Catheter-Related Infections/microbiology , Cross Infection/microbiology , Staphylococcal Infections/microbiology , Staphylococcus epidermidis/isolation & purification , DNA, Bacterial/genetics , Electrophoresis, Gel, Pulsed-Field , Genotype , Length of Stay , Microbial Sensitivity Tests , Pancreatitis, Chronic/surgery , Staphylococcus epidermidis/drug effects , Staphylococcus epidermidis/genetics
8.
Braz J Med Biol Res ; 41(10): 890-5, 2008 Oct.
Article in English | MEDLINE | ID: mdl-19030711

ABSTRACT

Enterococcus spp bacteremia is associated with high mortality and the appearance of high-level gentamicin resistance (HLGR) created additional challenges for the treatment of these infections. We evaluated the epidemiological and clinical characteristics of patients with bacteremias caused by HLGR and non_HLGR Enterococcus faecalis isolates at a teaching hospital in the State of São Paulo, Brazil. Patients with bacteremia due to E. faecalis diagnosed between January 1999 and December 2003 were included in the study. We collected clinical, epidemiological, and microbiological data from medical records. Banked isolates were typed using pulsed-field gel electrophoresis. We identified 145 cases of E. faecalis bacteremia: 66 (45.5%) were caused by HLGR isolates and 79 (54.5%) by non_HLGR. In the univariate analysis, patients with HLGR infection were older, had higher rates of bladder catheterization, and more often had treatment with cephalosporin, quinolone, and/or carbapenem compared with patients with non_HLGR infection (P < 0.05). Multivariate analysis indicated that older age, hematological malignancy, and previous use of vancomycin were independently associated with HLGR (P < 0.05). Mortality rates were not significantly different among patients with HLGR (50%) and non_HLGR (43%) infections (P = 0.40). Of the 32 genotyped isolates, 16 were distributed into 6 main electrophoresis patterns and 16 others had distinct patterns. E. faecalis bacteremia is associated with high mortality and is frequently caused by HLGR isolates at this teaching hospital. The variability among genotyped isolates suggests that endogenous infections, rather than patient-to-patient transmission of E. faecalis, are more common at this institution.


Subject(s)
Bacteremia/microbiology , Drug Resistance, Bacterial , Enterococcus faecalis/drug effects , Gentamicins/pharmacology , Gram-Positive Bacterial Infections/microbiology , Adolescent , Adult , Aged , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Bacteremia/drug therapy , Bacteremia/mortality , Brazil , Child , Child, Preschool , Electrophoresis, Gel, Pulsed-Field , Female , Gram-Positive Bacterial Infections/drug therapy , Gram-Positive Bacterial Infections/mortality , Humans , Infant , Infant, Newborn , Male , Microbial Sensitivity Tests , Middle Aged , Young Adult
9.
Braz. j. med. biol. res ; 41(10): 890-895, Oct. 2008. ilus, tab
Article in English | LILACS | ID: lil-496810

ABSTRACT

Enterococcus spp bacteremia is associated with high mortality and the appearance of high-level gentamicin resistance (HLGR) created additional challenges for the treatment of these infections. We evaluated the epidemiological and clinical characteristics of patients with bacteremias caused by HLGR and non_HLGR Enterococcus faecalis isolates at a teaching hospital in the State of São Paulo, Brazil. Patients with bacteremia due to E. faecalis diagnosed between January 1999 and December 2003 were included in the study. We collected clinical, epidemiological, and microbiological data from medical records. Banked isolates were typed using pulsed-field gel electrophoresis. We identified 145 cases of E. faecalis bacteremia: 66 (45.5 percent) were caused by HLGR isolates and 79 (54.5 percent) by non_HLGR. In the univariate analysis, patients with HLGR infection were older, had higher rates of bladder catheterization, and more often had treatment with cephalosporin, quinolone, and/or carbapenem compared with patients with non_HLGR infection (P < 0.05). Multivariate analysis indicated that older age, hematological malignancy, and previous use of vancomycin were independently associated with HLGR (P < 0.05). Mortality rates were not significantly different among patients with HLGR (50 percent) and non_HLGR (43 percent) infections (P = 0.40). Of the 32 genotyped isolates, 16 were distributed into 6 main electrophoresis patterns and 16 others had distinct patterns. E. faecalis bacteremia is associated with high mortality and is frequently caused by HLGR isolates at this teaching hospital. The variability among genotyped isolates suggests that endogenous infections, rather than patient-to-patient transmission of E. faecalis, are more common at this institution.


Subject(s)
Adolescent , Adult , Aged , Child , Child, Preschool , Female , Humans , Infant , Infant, Newborn , Male , Middle Aged , Young Adult , Bacteremia/microbiology , Drug Resistance, Bacterial , Enterococcus faecalis/drug effects , Gentamicins/pharmacology , Gram-Positive Bacterial Infections/microbiology , Anti-Bacterial Agents/pharmacology , Anti-Bacterial Agents/therapeutic use , Brazil , Bacteremia/drug therapy , Bacteremia/mortality , Electrophoresis, Gel, Pulsed-Field , Gram-Positive Bacterial Infections/drug therapy , Gram-Positive Bacterial Infections/mortality , Microbial Sensitivity Tests , Young Adult
10.
Clin Microbiol Infect ; 12(6): 538-43, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16700702

ABSTRACT

This study aimed to determine whether candiduria is associated with the occurrence of nosocomial candidaemia. In the case-control part of the study, 115 cases (nosocomial candidaemia) and 115 controls (nosocomial bacteraemia) were similar in age, severity of condition and time of hospitalisation. There was a significant association of candidaemia with candiduria (OR 9.79; 95% CI 2.14-44.76). In the microbiology part of the study, 23 pairs of Candida-positive urine and blood cultures were obtained from 23 patients. In ten (43%) cases, the urine and blood culture isolates belonged to different species, and molecular typing showed a difference in two of the 13 cases yielding the same species from both specimens. Overall, there was a significant association between candiduria and candidaemia, but the Candida isolates from urine and blood were different for 52% of the patients. Thus, the data indicated that the urinary tract was probably not a source for the candidaemia.


Subject(s)
Candida/isolation & purification , Candidiasis/microbiology , Cross Infection/microbiology , Fungemia/microbiology , Urinary Tract Infections/microbiology , Adolescent , Adult , Aged , Aged, 80 and over , Brazil/epidemiology , Candida/classification , Candidiasis/epidemiology , Case-Control Studies , Child , Child, Preschool , Cross Infection/epidemiology , DNA Primers/chemistry , Electrophoresis, Gel, Pulsed-Field/methods , Female , Fungemia/epidemiology , Humans , Male , Middle Aged , Polymerase Chain Reaction/methods , Risk Factors , Urinary Tract Infections/epidemiology
11.
J Hosp Infect ; 63(2): 117-23, 2006 Jun.
Article in English | MEDLINE | ID: mdl-16517007

ABSTRACT

A prospective cohort study was conducted from January 2000 to December 2001 to determine the rate of bacterial nosocomial infections in renal transplant recipients. The patients were divided into two groups according to the origin of the allograft, namely deceased or living related donors. One hundred and sixty-three renal transplant recipients were reviewed during hospitalization; 110 (67.5%) kidneys were from deceased donors and 53 (32.5%) kidneys were from living related donors. The median length of hospitalization was 12 days for transplants from living related donors and 26 days for transplants from deceased donors (P<0.0001). Twenty-one (39.6%) recipients of kidneys from living related donors and 68 (61.8%) recipients of kidneys from deceased donors had bacterial nosocomial infectious episodes (P=0.019). The post-transplant nosocomial infections diagnosed during hospitalization included urinary tract infections (UTIs) (44.8%), surgical site infections (SSIs) (11%), pneumonia (6.1%), catheter-related bloodstream infections (4.2%) and others (1.8%). Risk factors for UTI included: recipient of kidney from a deceased donor, substitution of the initial immunosuppressive regimen, duration of urinary bladder catheterization, and length of hospitalization before the infection. Six Enterobacter cloacae strains with multiple resistances to antibiotics were identified in UTIs, and hospital dissemination was documented using molecular typing. UTI was the single most important hospital infection and was significantly higher in recipients of kidneys from deceased donors (P=0.001).


Subject(s)
Bacterial Infections/epidemiology , Cross Infection/epidemiology , Kidney Transplantation/adverse effects , Surgical Wound Infection/epidemiology , Urinary Tract Infections/epidemiology , Adolescent , Adult , Aged , Bacterial Infections/microbiology , Bacterial Infections/prevention & control , Brazil/epidemiology , Cross Infection/microbiology , Cross Infection/prevention & control , Female , Humans , Logistic Models , Male , Middle Aged , Multivariate Analysis , Prospective Studies , Risk Factors , Surgical Wound Infection/microbiology , Surgical Wound Infection/prevention & control , Urinary Tract Infections/microbiology , Urinary Tract Infections/prevention & control
12.
Eur J Clin Microbiol Infect Dis ; 24(11): 721-6, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16328556

ABSTRACT

The diagnosis of candidemia is important for prompt initiation of antifungal therapy. Two hundred twenty-five patients at high risk for candidemia who had blood cultures drawn and were hospitalized for more than 15 days were followed-up prospectively over a 2-year period. Polymerase chain reaction (PCR) and whole-blood cultures monitored by the automated BactAlert system (Organon Teknika, Durham, NC, USA) were used to detect candidemia in all patients hospitalized in high-risk areas for more than 15 days. DNA was extracted and amplified using ITS5 and ITS4 base pair primers, and the PCR products were sequenced for identification of Candida spp. A blood culture positive for Candida was considered the gold standard for diagnosis of candidemia. Variables associated with the development of candidemia diagnosed by positive blood culture were also evaluated in the patients. The overall mortality rate was 26.1%. Mortality in candidemic patients was 41.9% and in noncandidemic patients 22.5% (p = 0.009). PCR sensitivity and specificity were 72.1 and 91.2%, respectively. Positive and negative predictive values were 65.9 and 93.2%, respectively. The logistic regression of the multivariate analysis showed that parenteral nutrition (p < 0.0001), fever (p = 0.01), neutropenia (p = 0.04), and an indwelling urinary catheter (p = 0.02) were significant variables associated with the development of candidemia. The PCR technique in conjunction with DNA sequencing was a helpful tool in the diagnosis of candidemia.


Subject(s)
Candida/isolation & purification , Candidiasis/diagnosis , Cross Infection/diagnosis , Fungemia/diagnosis , Polymerase Chain Reaction , Candida/genetics , Candidiasis/epidemiology , Cross Infection/epidemiology , Culture Media , Culture Techniques , Fungemia/epidemiology , Humans , Prospective Studies , Risk Factors
13.
Mycopathologia ; 160(4): 291-6, 2005 Nov.
Article in English | MEDLINE | ID: mdl-16244897

ABSTRACT

Fusarium species are hyaline moulds belonging to the hyalohyphomycosis group that are usually found in the soil and plants. This organism has emerged as a cause of disseminated invasive disease. The correlation between in vitro value and clinical efficacy is low and many patients remain unresponsive to treatment despite in vitro susceptibility. We determined growth control for Fusarium solani using the BioCell-Tracer system that measures the growth rate of a single fungal hypha, and the effect of different concentrations of amphotericin B and itraconazole. The MIC for these two drugs was also determined by a broth microdilution technique, using RPMI 1640. Different MICs for amphotericin B were obtained by the two different methods. This paper describes a case of infection due to Fusarium solani in an allogeneic bone marrow transplanted patient, the microbiological diagnostic, antifungal susceptibility tests for conidia and hypha and clinical correlation.


Subject(s)
Amphotericin B/pharmacology , Antifungal Agents/pharmacology , Fusarium/drug effects , Mycoses/microbiology , Sepsis/microbiology , Adult , Amphotericin B/therapeutic use , Antifungal Agents/therapeutic use , Bone Marrow Transplantation/adverse effects , DNA, Fungal/chemistry , DNA, Fungal/genetics , Fatal Outcome , Female , Fusarium/growth & development , Fusarium/isolation & purification , Humans , Immunocompromised Host , Mycoses/drug therapy , Pregnancy , Pregnancy Complications, Infectious/microbiology , Sepsis/drug therapy
14.
Mycopathologia ; 159(1): 7-11, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15750727

ABSTRACT

Forty-five clinical and 55 environmental strains of Cryptococcus neoformans var. neoformans from São Paulo, Brazil, were tested for their susceptibilities to amphotericin B, fluconazole, itraconazole, and flucytosine by the broth microdilution method according to the National Committee of Clinical Laboratory Standards guidelines. Electrophoretic karyotypes analysis by counter-clamped homogeneous electrophoresis was used to compare their genetic relatedness. Molecular typing revealed three clinical profiles very similar to two environmental profiles and an identical environmental and clinical profile. The results showed that human cryptococcosis can be acquired from environmental strains, which had similar minimum inhibitory concentration values to clinical strains, for antifungal agents.


Subject(s)
Cryptococcosis/microbiology , Cryptococcus neoformans/growth & development , Animals , Antifungal Agents/pharmacology , Brazil , Columbidae/microbiology , Cryptococcosis/drug therapy , Cryptococcus neoformans/genetics , Cryptococcus neoformans/metabolism , DNA, Fungal/chemistry , DNA, Fungal/genetics , Electrophoresis, Gel, Pulsed-Field , Humans , Karyotyping , Microbial Sensitivity Tests , Rural Population , Urban Population
15.
Braz. j. med. biol. res ; 37(9): 1345-1351, Sept. 2004. ilus, tab
Article in English | LILACS | ID: lil-365227

ABSTRACT

Methicillin-resistant Staphylococcus aureus (MRSA) has been the cause of major outbreaks and epidemics among hospitalized patients, with high mortality and morbidity rates. We studied the genomic diversity of MRSA strains isolated from patients with nosocomial infection in a University Hospital from 1991 to 2001. The study consisted of two periods: period I, from 1991 to 1993 and period II from 1995 to 2001. DNA was typed by pulsed-field gel electrophoresis and the similarity among the MRSA strains was determined by cluster analysis. During period I, 73 strains presented five distinctive DNA profiles: A, B, C, D, and E. Profile A was the most frequent DNA pattern and was identified in 55 (75.3 percent) strains; three closely related and four possibly related profiles were also identified. During period II, 80 (68.8 percent) of 117 strains showed the same endemic profile A identified during period I, 18 (13.7 percent) closely related profiles and 18 (13.7 percent) possibly related profiles and, only one strain presented an unrelated profile. Cluster analysis showed a 96 percent coefficient of similarity between profile A from period I and profile A from period II, which were considered to be from the same clone. The molecular monitoring of MRSA strains permitted the determination of the clonal dissemination and the maintenance of a dominant endemic strain during a 10-year period and the presence of closely and possibly related patterns for endemic profile A. However, further studies are necessary to improve the understanding of the dissemination of the endemic profile in this hospital.


Subject(s)
Humans , Cross Infection , Disease Outbreaks , Methicillin Resistance , Staphylococcal Infections , Staphylococcus aureus , Brazil , DNA, Bacterial , Electrophoresis, Gel, Pulsed-Field , Genetic Variation , Genome, Bacterial , Hospitals, University , Microbial Sensitivity Tests
16.
Braz. j. med. biol. res ; 37(9): 1339-1343, Sept. 2004. ilus
Article in English | LILACS | ID: lil-365228

ABSTRACT

Nosocomial dissemination of glycopeptide-resistant enterococci represents a major problem in hospitals worldwide. In Brazil, the dissemination among hospitals in the city of São Paulo of polyclonal DNA profiles was previously described for vancomycin-resistant Enterococcus faecium. We describe here the dissemination of VanA phenotype E. faecalis between two hospitals located in different cities in the State of São Paulo. The index outbreak occurred in a tertiary care university hospital (HCUSP) in the city of São Paulo and three years later a cluster caused by the same strain was recognized in two patients hospitalized in a private tertiary care hospital (CMC) located 100 km away in the interior of the state. From May to July 1999, 10 strains of vancomycin-resistant E. faecalis were isolated from 10 patients hospitalized in the HCUSP. The DNA genotyping using pulsed-field gel electrophoresis (PFGE) showed that all isolates were originated from the same clone, suggesting nosocomial dissemination. From May to July 2002, three strains of vancomycin-resistant E. faecalis were isolated from two patients hospitalized in CMC and both patients were colonized by the vancomycin-resistant Enterococcus in skin lesions. All isolates from CMC and HCUSP were highly resistant to vancomycin and teicoplanin. The three strains from CMC had minimum inhibitory concentration >256 æg/ml for vancomycin, and 64 (CMC 1 and CMC 2) and 96 æg/ml (CMC 3) for teicoplanin, characterizing a profile of VanA resistance to glycopeptides. All strains had the presence of the transposon Tn1546 detected by PCR and were closely related when typed by PFGE. The dissemination of the E. faecalis VanA phenotype among hospitals located in different cities is of great concern because E. faecalis commonly colonizes the gastrointestinal tract of patients and healthy persons for periods varying from weeks to years, which, together with the persistence of vancomycin-resistant Enterococcus in hospital rooms after standard cleaning procedures, increases the risk of the dissemination and reservoir of the bacteria.


Subject(s)
Humans , Anti-Bacterial Agents , Cross Infection , Enterococcus faecalis , Gram-Positive Bacterial Infections , Vancomycin , Vancomycin Resistance , Bacterial Typing Techniques , Brazil , Disease Outbreaks , Electrophoresis, Gel, Pulsed-Field , Genes, Bacterial , Genotype , Gram-Positive Bacterial Infections , Microbial Sensitivity Tests , Polymerase Chain Reaction , Risk Factors
17.
Braz J Med Biol Res ; 37(9): 1339-43, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15334199

ABSTRACT

Nosocomial dissemination of glycopeptide-resistant enterococci represents a major problem in hospitals worldwide. In Brazil, the dissemination among hospitals in the city of São Paulo of polyclonal DNA profiles was previously described for vancomycin-resistant Enterococcus faecium. We describe here the dissemination of VanA phenotype E. faecalis between two hospitals located in different cities in the State of São Paulo. The index outbreak occurred in a tertiary care university hospital (HCUSP) in the city of São Paulo and three years later a cluster caused by the same strain was recognized in two patients hospitalized in a private tertiary care hospital (CMC) located 100 km away in the interior of the state. From May to July 1999, 10 strains of vancomycin-resistant E. faecalis were isolated from 10 patients hospitalized in the HCUSP. The DNA genotyping using pulsed-field gel electrophoresis (PFGE) showed that all isolates were originated from the same clone, suggesting nosocomial dissemination. From May to July 2002, three strains of vancomycin-resistant E. faecalis were isolated from two patients hospitalized in CMC and both patients were colonized by the vancomycin-resistant Enterococcus in skin lesions. All isolates from CMC and HCUSP were highly resistant to vancomycin and teicoplanin. The three strains from CMC had minimum inhibitory concentration >256 micro g/ml for vancomycin, and 64 (CMC 1 and CMC 2) and 96 micro g/ml (CMC 3) for teicoplanin, characterizing a profile of VanA resistance to glycopeptides. All strains had the presence of the transposon Tn1546 detected by PCR and were closely related when typed by PFGE. The dissemination of the E. faecalis VanA phenotype among hospitals located in different cities is of great concern because E. faecalis commonly colonizes the gastrointestinal tract of patients and healthy persons for periods varying from weeks to years, which, together with the persistence of vancomycin-resistant Enterococcus in hospital rooms after standard cleaning procedures, increases the risk of the dissemination and reservoir of the bacteria.


Subject(s)
Bacterial Proteins , Carbon-Oxygen Ligases , Cross Infection/microbiology , Enterococcus faecalis , Gram-Positive Bacterial Infections/microbiology , Anti-Bacterial Agents/therapeutic use , Bacterial Proteins/genetics , Brazil/epidemiology , Carbon-Oxygen Ligases/genetics , Cross Infection/epidemiology , Disease Outbreaks , Enterococcus faecalis/genetics , Enterococcus faecalis/isolation & purification , Gram-Positive Bacterial Infections/epidemiology , Gram-Positive Bacterial Infections/transmission , Humans , Microbial Sensitivity Tests , Polymerase Chain Reaction , Vancomycin/therapeutic use , Vancomycin Resistance/genetics
18.
Braz J Med Biol Res ; 37(9): 1345-51, 2004 Sep.
Article in English | MEDLINE | ID: mdl-15334200

ABSTRACT

Methicillin-resistant Staphylococcus aureus (MRSA) has been the cause of major outbreaks and epidemics among hospitalized patients, with high mortality and morbidity rates. We studied the genomic diversity of MRSA strains isolated from patients with nosocomial infection in a University Hospital from 1991 to 2001. The study consisted of two periods: period I, from 1991 to 1993 and period II from 1995 to 2001. DNA was typed by pulsed-field gel electrophoresis and the similarity among the MRSA strains was determined by cluster analysis. During period I, 73 strains presented five distinctive DNA profiles: A, B, C, D, and E. Profile A was the most frequent DNA pattern and was identified in 55 (75.3%) strains; three closely related and four possibly related profiles were also identified. During period II, 80 (68.8%) of 117 strains showed the same endemic profile A identified during period I, 18 (13.7%) closely related profiles and 18 (13.7%) possibly related profiles and, only one strain presented an unrelated profile. Cluster analysis showed a 96% coefficient of similarity between profile A from period I and profile A from period II, which were considered to be from the same clone. The molecular monitoring of MRSA strains permitted the determination of the clonal dissemination and the maintenance of a dominant endemic strain during a 10-year period and the presence of closely and possibly related patterns for endemic profile A. However, further studies are necessary to improve the understanding of the dissemination of the endemic profile in this hospital.


Subject(s)
Cross Infection/epidemiology , Disease Outbreaks , Methicillin Resistance/genetics , Staphylococcal Infections/epidemiology , Staphylococcus aureus/genetics , Brazil/epidemiology , Cross Infection/microbiology , Electrophoresis, Gel, Pulsed-Field , Genetic Variation , Hospitals, University , Humans , Microbial Sensitivity Tests , Staphylococcal Infections/microbiology , Staphylococcus aureus/drug effects , Staphylococcus aureus/isolation & purification
19.
Am J Obstet Gynecol ; 182(5): 1086-8, 2000 May.
Article in English | MEDLINE | ID: mdl-10819835

ABSTRACT

Cervical incompetence has been acknowledged as a significant entity predisposing patients to second-trimester miscarriage. Various surgical techniques and approaches have been used in an attempt to prolong pregnancy and improve perinatal outcome. These include transvaginal and transabdominal cervical cerclage. Some patients require the placement of a transabdominal cervicoisthmic cerclage. Should the cerclage fail or the patient have preterm premature rupture of membranes, removal of the cerclage may be necessary. As a result the application of laparoscopy for the management of cervicoisthmic cerclage removal has been advocated in an effort to limit surgical complications. We report a case of laparoscopic removal of a transabdominally placed cervical cerclage in a 32-year-old woman at 16 weeks' gestation with preterm premature rupture of membranes and inevitable miscarriage. Laparoscopy appeared to be a safe and effective means of managing the removal of this transabdominally placed cervicoisthmic cerclage.


Subject(s)
Laparoscopy , Uterine Cervical Incompetence/surgery , Abdomen , Adult , Female , Fetal Membranes, Premature Rupture , Gestational Age , Humans , Laparotomy , Pregnancy , Surgical Equipment
20.
Obstet Gynecol ; 94(5 Pt 2): 825-7, 1999 Nov.
Article in English | MEDLINE | ID: mdl-10546744

ABSTRACT

BACKGROUND: Placenta accreta has been estimated to complicate approximately one in 2500 deliveries, resulting in significant morbidity and mortality. Conservative treatment of placenta accreta has been done in certain clinical situations when preservation of the uterus and further childbearing are desired. The Argon beam coagulator is an electrosurgical device used for hemostasis during various operations. We report its use in a case complicated by placenta accreta. CASE: A 33-year-old woman, gravida 2 para 1, with placenta accreta was treated with the Argon beam coagulator, and hemostasis was achieved in the lower uterine segment. CONCLUSION: In selected cases, the Argon beam coagulator can assist conservative treatment of placenta accreta.


Subject(s)
Electrosurgery , Placenta Accreta/surgery , Adult , Argon , Female , Humans , Pregnancy
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