ABSTRACT
Based on the structure of the D-loop control region of mitochondrial DNA, the genetic diversity of moose of West Siberia was evaluated and their placement within the structure of current species population was determined. It was noted that the values of genetic diversity exceed the values of analogous indices obtained for western groups of the species. Three haplogroups were identified in the population structure: European- Ural, West Siberian, and American.
Subject(s)
DNA, Mitochondrial/genetics , Haplotypes , Ruminants/genetics , Animals , SiberiaABSTRACT
The article considers development of highly effective technique of detection of genetic material of ricketsia based on polymerase chain reaction in real-time using original primers to the most conservative sites of gene of citrate synthase (gItA). The analytical sensitivity of the developed polymerase chain reaction in real-time test permits to detect from 80 genome equivalents in analyzed sample during three hours. The high specificity of test-system is substantiated by detection of nucleotide sequences of amplificated fragments of gene gltA. The approbation ofthe polymerase chain reaction in real-time test is carried out on collection of 310 ticks of species I. persulcatus, I. pavlovskyi, D. reticulatus. It is demonstrated that the developed alternate ofprimers and probe permits with high degree of sensitivity and specifcity to detect DNA of different species of ricketsia widespread on territory of Russia (R. sibirica, R. raoultii, R. helvetica, R. tarasevichiae). The proposed polymerase chain reaction in real-time test can be appliedfor isolation of fragment of gene gltA with purpose for detecting nucleotide sequence and subsequent genetic typing of ricketsia. The application ofthe proposed technique can facilitate task of monitoring hot spots of ricketsiosis.
Subject(s)
Bacterial Proteins/genetics , Citrate (si)-Synthase/genetics , DNA, Bacterial/genetics , Ixodes/microbiology , Real-Time Polymerase Chain Reaction/methods , Rickettsia/genetics , Animals , DNA Primers/chemical synthesis , DNA Primers/chemistry , DNA Probes/chemical synthesis , DNA Probes/chemistry , Gene Expression , Ixodes/chemistry , Rickettsia/classification , Rickettsia/isolation & purification , Russia , Sensitivity and SpecificityABSTRACT
An analysis of polymorphism of the fragment of the control region of mitochondrial DNA of 53 tissue samples of the brown bear Ursus arctos from several regions of the eastern part of Russia was carried out. It was found that most of the described haplotypes belong to cluster 3a, the most common in Eurasia, and do not form regionally specific haplogroups. However, among the bears from Western and Eastern Siberia, as well as the island of Kunashir, three haplotypes were identified, which are close to the haplogroup typical of Eastern Hokkaido bears. The assumption was made of the existence in Siberia and the Far East of one or more Pleistocene refugia.
Subject(s)
DNA, Mitochondrial/genetics , Evolution, Molecular , Locus Control Region/genetics , Ursidae/genetics , Animals , Genetic Variation , Haplotypes , Phylogeography , Polymorphism, Genetic , RussiaABSTRACT
The role of birds in the focus of tick-borne infections was studied from 2006 to 2011. The frequency index of ticks carried by ground dwelling birds is about 49.7%. The index of their abundance is 3.8. The larvae of ticks have been found on birds in 43.8% of cases. Nymphs and adult ticks have been found in 39.9 and 16.3%, respectively. It was revealed that Ixodex pavlovskyi was transferred and dominated in the urban microfoci because of its ornithophily. The markers of infectious agents have been recorded in 42 of 60 bird species under study.
Subject(s)
Ixodes/pathogenicity , Larva/pathogenicity , Tick-Borne Diseases/epidemiology , Tick-Borne Diseases/transmission , Animals , Birds/virology , Humans , Ixodes/classification , Russia , Tick-Borne Diseases/virology , Viruses/isolation & purification , Viruses/pathogenicityABSTRACT
Motor asymmetry of paws was studied in three species of mouse rodents (Apodemus agrarius, Clethrionomys glareolus, Clethrionomys rutilus) from natural populations. The prevalence of right-hand asymmetry was revealed in both males and females of all studied species. The spatial and temporal variability of asymmetry structures was shown. The increased number of left-handed rodents was observed in unfavorable habitats. A possible adaptive role of the functional motor asymmetry exemplified by small rodents is discussed.
Subject(s)
Arvicolinae/physiology , Functional Laterality , Motor Activity/physiology , Murinae/physiology , Animals , Female , Male , PopulationABSTRACT
Four tick species, Ixodes persulcatus, I. pavlovskyi, I. trianguliceps, and Dermacentor reticulatus, were found in Tomsk and its suburbs in 2006. The species I. pavlovskyi was found to be dominant in the localities situated in Tomsk City, and I. persulcatus was dominant in its suburbs. Viral RNA and viral antigen of the West Nile virus (WNV) were detected in the ticks I. pavlovskyi and I. persulcatus collected in the city and its suburbs by the RT PCR method and enzyme immunoassay with monoclonal antibodies against protein E of the WNV. Average rate of the WNV infected ticks varied from 5.2 up to 11.7% in different localities. Identification of the nucleotide sequence of the protein E gene fragment allowed classifying the cDNA obtained as genotype Ia of the WNV. The sequences are proved similar to the strain LEIV-Vlg99-27889-human of the WNV isolated in Volgograd. The obtained data showed that natural foci of the WNV virus can appear in the city and its suburbs probably involving two dominant tick species. The WNV infected imagoes, larvae, and nymphs of I. persulcatus and I. pavlovskyi were collected from small mammals, lizards, and birds. Therefore we presume that these hosts can be involved in the circulation and distribution of WNV on the territory of Tomsk Region.