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1.
Socioecon Plann Sci ; 88: 101614, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37346799

ABSTRACT

The breakout of the pandemic COVID-19 has affected numerous countries and territories worldwide. As COVID-19 specific medicines yet to be invented, at present the treatment is case specific, hence identification and evaluation of different prevalent treatment options based on various criteria and attributes are very important not only from the point of view of present pandemic but also for futuristic pandemic preparedness. The present study focuses on identifying, evaluation and ranking of treatment options using Multi Criteria Decision Making (MCDM). In this regard, the existing literature, doctors and scientist were interviewed to know the current treatment options in vogue and the scale of their importance with respect to the criteria. The criteria taken are side effect, regime cost, treatment duration, plasma stability, plasma turnover, time of suppression, ease of application, drug-drug interaction, compliance, fever, pneumonia, intensive care, organ failure, macrophage activation syndrome, hemophagocytic syndrome, pregnancy, kidney problem, age. This study extended Hesitant Fuzzy Set (HFS) to Generalized Hesitant Fuzzy Sets (GHFS). Generalized Hesitant Pentagonal Fuzzy Number (GHPFN) is developed. The properties of GHPFN are demonstrated. Two types of GHPFN has been described. The GHPFN (2nd type) along with MCDM tool Technique for Order Preference by Similarity to Ideal Solution (TOPSIS) has been applied to rank the treatment options. The result of the study ranked 'Hydroxychloroquine' as the first alternative followed by, 'Plasma Exchange', 'Tocilizumab', 'Remdesivir' and 'Favipravir'. To check the robustness and steadiness of the proposed methodology, comparative analysis and sensitivity analysis has been conducted.

2.
Front Mol Biosci ; 9: 844826, 2022.
Article in English | MEDLINE | ID: mdl-35252358

ABSTRACT

Adenosine triphosphate (ATP) is an important fuel of life for humans and Mycobacterium species. Its potential role in modulating cellular functions and implications in systemic, pulmonary, and ocular diseases is well studied. Plasma ATP has been used as a diagnostic and prognostic biomarker owing to its close association with disease's progression. Several stresses induce altered ATP generation, causing disorders and illnesses. Small heat shock proteins (sHSPs) are dynamic oligomers that are dominantly ß-sheet in nature. Some important functions that they exhibit include preventing protein aggregation, enabling protein refolding, conferring thermotolerance to cells, and exhibiting anti-apoptotic functions. Expression and functions of sHSPs in humans are closely associated with several diseases like cataracts, cardiovascular diseases, renal diseases, cancer, etc. Additionally, there are some mycobacterial sHSPs like Mycobacterium leprae HSP18 and Mycobacterium tuberculosis HSP16.3, whose molecular chaperone functions are implicated in the growth and survival of pathogens in host species. As both ATP and sHSPs, remain closely associated with several human diseases and survival of bacterial pathogens in the host, therefore substantial research has been conducted to elucidate ATP-sHSP interaction. In this mini review, the impact of ATP on the structure and function of human and mycobacterial sHSPs is discussed. Additionally, how such interactions can influence the onset of several human diseases is also discussed.

3.
Int J Biol Macromol ; 193(Pt A): 838-846, 2021 Dec 15.
Article in English | MEDLINE | ID: mdl-34728300

ABSTRACT

Discovery of robust, selective and specific biomarkers are important for early diagnosis and monitor progression of human diseases. Eye being a common target for several human diseases, vision impediment and complications are often associated with systemic and ocular diseases. Tears are bodily fluids that are closest to eye and are rich in protein content and other metabolites. As a biomarker repository, it advantages over other bodily fluids due to the ability to collect it non-invasively. In this review, we highlight some recent advancements in identification of tear-based protein biomarkers like lacryglobin and cystatin SA for cancer; interleukin-6 and immunoglobulin-A antibody for COVID-19; tau, amyloid-ß-42 and lysozyme-C for Alzheimer's disease; peroxiredoxin-6 and α-synuclein for Parkinson's disease; kallikrein, angiotensin converting enzyme and lipocalin-1 for glaucoma; lactotransferrin and lipophilin-A for diabetic retinopathy and zinc-alpha-2 glycoprotein-1, prolactin and calcium binding protein-A4 for eye thyroid disease. We also discussed identification of tear based non-protein biomarkers like lysophospholipids and acetylcarnitine for glaucoma, 8-hydroxy-2'-deoxyquanosine and malondialdehyde for thyroid eye disease. We elucidate technological advancement in developing tear-based biosensors for diagnosis and monitoring diseases such as diabetes, diabetic retinopathy and Alzheimer's disease. Altogether, the study of tears as potential biomarkers for early diagnosis of human diseases is promising.


Subject(s)
Biomarkers, Tumor/metabolism , COVID-19 , Early Detection of Cancer , Eye Diseases , Neurodegenerative Diseases , SARS-CoV-2/metabolism , Tears/metabolism , COVID-19/diagnosis , COVID-19/metabolism , Eye Diseases/diagnosis , Eye Diseases/metabolism , Humans , Neurodegenerative Diseases/diagnosis , Neurodegenerative Diseases/metabolism
4.
Glycoconj J ; 38(3): 347-359, 2021 06.
Article in English | MEDLINE | ID: mdl-33245448

ABSTRACT

Proteins in the eye lens have negligible turnover and therefore progressively accumulate chemical modifications during aging. Carbonyls and oxidative stresses, which are intricately linked to one another, predominantly drive such modifications. Oxidative stress leads to the loss of glutathione (GSH) and ascorbate degradation; this in turn leads to the formation of highly reactive dicarbonyl compounds that react with proteins to form advanced glycation end products (AGEs). The formation of AGEs leads to the crosslinking and aggregation of proteins contributing to lens aging and cataract formation. To inhibit AGE formation, we developed a disulfide compound linking GSH diester and mercaptoethylguanidine, and we named it carboxitin. Bovine lens organ cultured with carboxitin showed higher levels of GSH and mercaptoethylguanidine in the lens nucleus. Carboxitin inhibited erythrulose-mediated mouse lens protein crosslinking, AGE formation and the formation of 3-deoxythreosone, a major ascorbate-derived AGE precursor in the human lens. Carboxitin inhibited the glycation-mediated increase in stiffness in organ-cultured mouse lenses measured using compressive mechanical strain. Delivery of carboxitin into the lens increases GSH levels, traps dicarbonyl compounds and inhibits AGE formation. These properties of carboxitin could be exploited to develop a therapy against the formation of AGEs and the increase in stiffness that causes presbyopia in aging lenses.


Subject(s)
Glutathione/analogs & derivatives , Glutathione/chemical synthesis , Lens, Crystalline/drug effects , Animals , Cattle , Glycation End Products, Advanced , Glycosylation , Lens, Crystalline/physiology , Mice , Mice, Inbred C57BL , Protein Binding , Tetroses/metabolism , Tumor Cells, Cultured
5.
Biochem Biophys Res Commun ; 533(4): 1352-1358, 2020 12 17.
Article in English | MEDLINE | ID: mdl-33081971

ABSTRACT

The chaperone activity of α-crystallin is important for maintaining the transparency of the human lens. αB-crystallin (αBC) is a long-lived protein in the lens that accumulates chemical modifications during aging. The formation of advanced glycation end products (AGEs) through glycation is one such modification. αBC is a small heat shock protein that exhibits chaperone activity. We have previously shown that αBC-client protein complexes can undergo AGE-mediated interprotein cross-linking. Here, we demonstrate that short-term (1 h) exposure to elevated temperatures and methylglyoxal (MGO) during the chaperoning of client proteins by αBC promotes AGE-mediated interprotein cross-linking. Liquid chromatography/mass spectrometry (LC-MS/MS) analyses revealed the rapid formation of AGEs by MGO. Interestingly, we found that despite protein cross-linking, the chaperone activity of αBC increased during the transient elevation of temperature in the presence of MGO. Together, these results imply that transient and subtle elevation of temperature in the lens of the eye can promote protein cross-linking through AGEs, and if this phenomenon recurs over a period of many years, it could lead to early onset of presbyopia and age-related cataracts.


Subject(s)
Glycation End Products, Advanced/chemistry , alpha-Crystallin B Chain/chemistry , alpha-Crystallin B Chain/metabolism , Arginine/analogs & derivatives , Arginine/chemistry , Arginine/metabolism , Cataract/metabolism , Citrate (si)-Synthase/chemistry , Citrate (si)-Synthase/metabolism , Cross-Linking Reagents/chemistry , Glycation End Products, Advanced/metabolism , Humans , Malate Dehydrogenase/chemistry , Malate Dehydrogenase/metabolism , Multiprotein Complexes/chemistry , Multiprotein Complexes/metabolism , Presbyopia/metabolism , Pyruvaldehyde/chemistry , Pyruvaldehyde/metabolism , Temperature , alpha-Crystallin B Chain/genetics
6.
J Biol Chem ; 295(17): 5701-5716, 2020 04 24.
Article in English | MEDLINE | ID: mdl-32184356

ABSTRACT

Lens proteins become increasingly cross-linked through nondisulfide linkages during aging and cataract formation. One mechanism that has been implicated in this cross-linking is glycation through formation of advanced glycation end products (AGEs). Here, we found an age-associated increase in stiffness in human lenses that was directly correlated with levels of protein-cross-linking AGEs. α-Crystallin in the lens binds to other proteins and prevents their denaturation and aggregation through its chaperone-like activity. Using a FRET-based assay, we examined the stability of the αA-crystallin-γD-crystallin complex for up to 12 days and observed that this complex is stable in PBS and upon incubation with human lens-epithelial cell lysate or lens homogenate. Addition of 2 mm ATP to the lysate or homogenate did not decrease the stability of the complex. We also generated complexes of human αA-crystallin or αB-crystallin with alcohol dehydrogenase or citrate synthase by applying thermal stress. Upon glycation under physiological conditions, the chaperone-client complexes underwent greater extents of cross-linking than did uncomplexed protein mixtures. LC-MS/MS analyses revealed that the levels of cross-linking AGEs were significantly higher in the glycated chaperone-client complexes than in glycated but uncomplexed protein mixtures. Mouse lenses subjected to thermal stress followed by glycation lost resilience more extensively than lenses subjected to thermal stress or glycation alone, and this loss was accompanied by higher protein cross-linking and higher cross-linking AGE levels. These results uncover a protein cross-linking mechanism in the lens and suggest that AGE-mediated cross-linking of α-crystallin-client complexes could contribute to lens aging and presbyopia.


Subject(s)
Aging , Lens, Crystalline/metabolism , Presbyopia/metabolism , alpha-Crystallin A Chain/metabolism , Adolescent , Adult , Aged , Glycation End Products, Advanced/analysis , Glycation End Products, Advanced/metabolism , Glycosylation , Humans , Lens, Crystalline/chemistry , Middle Aged , Protein Denaturation , Young Adult , alpha-Crystallin A Chain/chemistry , gamma-Crystallins/chemistry , gamma-Crystallins/metabolism
7.
Exp Eye Res ; 190: 107864, 2020 01.
Article in English | MEDLINE | ID: mdl-31678036

ABSTRACT

Acylated lysine residues represent major chemical modifications in proteins. We investigated the malonylation and propionylation of lysine residues (MalK, PropK) in the proteins of aging human lenses. Western blot results showed that the two modifications are present in human lens proteins. Liquid chromatography-mass spectrometry (LC-MS/MS) results showed 4-18 and 4-32 pmol/mg protein of MalK and PropK, respectively, in human lens proteins with no apparent changes related to aging. Mass spectrometry results revealed that MalK- and PropK-modified lysine residues are present in all major crystallins, other cytosolic proteins, and membrane and cytoskeletal proteins of the lens. Several mitochondrial and cytosolic proteins in cultured human lens epithelial cells showed MalK and PropK modifications. Sirtuin 3 (SIRT3) and sirtuin 5 (SIRT5) were present in human lens epithelial and fiber cells. Moreover, lens epithelial cell lysate deacylated propionylated and malonylated lysozyme. The absence of SIRT3 and SIRT5 led to higher PropK and MalK levels in mouse lenses. Together, these data suggest that MalK and PropK are widespread modifications in lens and SIRT3 and SIRT5 could regulate their levels in lens epithelial cells.


Subject(s)
Crystallins/metabolism , Lens, Crystalline/metabolism , Lysine/metabolism , Malonates/metabolism , Propionates/metabolism , Sirtuin 3/metabolism , Sirtuins/metabolism , Aging/physiology , Animals , Blotting, Western , Chromatography, Liquid , Cytoskeletal Proteins/metabolism , Cytosol/metabolism , Epithelial Cells/metabolism , Humans , Immunohistochemistry , Membrane Proteins/metabolism , Mice, Inbred C57BL , Mice, Knockout , Middle Aged , Mitochondrial Proteins/metabolism , Organ Culture Techniques , Paraffin Embedding , Tandem Mass Spectrometry
8.
Proteins ; 88(6): 759-774, 2020 06.
Article in English | MEDLINE | ID: mdl-31860142

ABSTRACT

Hsp16.3, a molecular chaperone, plays a vital role in the growth and survival of Mycobacterium tuberculosis inside the host. We previously reported that deletion of three amino acid residues (142 STN144 ) from C-terminal extension (CTE) of Hsp16.3 triggers its structural perturbation and increases its chaperone activity, which reaches its apex upon the deletion of its entire CTE (141 RSTN144 ). Thus, we hypothesized that Arg141 (R141) and Ser142 (S142) in the CTE of Hsp16.3 possibly hold the key in maintaining its native-like structure and chaperone activity. To test this hypothesis, we generated two deletion mutants in which R141 and S142 were deleted individually (Hsp16.3ΔR141 and Hsp16.3ΔS142) and three substitution mutants in which R141 was replaced by lysine (Hsp16.3R141K), alanine (Hsp16.3R141A), and glutamic acid (Hsp16.3R141E), respectively. Hsp16.3ΔS142 or Hsp16.3R141K mutant has native-like structure and chaperone activity. Deletion of R141 from the CTE (Hsp16.3ΔR141) perturbs the secondary and tertiary structure, lowers the subunit exchange dynamics and decreases the chaperone activity of Hsp16.3. But, the substitution of R141 with alanine (Hsp16.3R141A) or glutamic acid (Hsp16.3R141E) perturbs its secondary and tertiary structure. Surprisingly, such charge tampering of R141 enhances the subunit exchange dynamics and chaperone activity of Hsp16.3. Interestingly, neither the deletion of R141/S142 nor the substitution of R141 with lysine, alanine and glutamic acid affects the oligomeric mass/size of Hsp16.3. Overall, our study suggests that R141 (especially the positive charge on R141) plays a crucial role in maintaining the native-like structure as well as in regulating subunit exchange dynamics and chaperone activity of Hsp16.3.


Subject(s)
Arginine/chemistry , Bacterial Proteins/chemistry , Chaperonins/chemistry , Mycobacterium tuberculosis/genetics , Serine/chemistry , Alanine/chemistry , Alanine/genetics , Alanine/metabolism , Amino Acid Substitution , Arginine/genetics , Arginine/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Binding Sites , Chaperonins/genetics , Chaperonins/metabolism , Glutamic Acid/chemistry , Glutamic Acid/genetics , Glutamic Acid/metabolism , Hydrophobic and Hydrophilic Interactions , Lactalbumin/chemistry , Lactalbumin/genetics , Lactalbumin/metabolism , Lysine/chemistry , Lysine/genetics , Lysine/metabolism , Mycobacterium tuberculosis/metabolism , Protein Binding , Protein Conformation, alpha-Helical , Protein Conformation, beta-Strand , Protein Interaction Domains and Motifs , Protein Structure, Tertiary , Protein Subunits , Serine/genetics , Serine/metabolism , Static Electricity , Structure-Activity Relationship , Substrate Specificity , Thermodynamics
9.
Int J Biol Macromol ; 146: 648-660, 2020 Mar 01.
Article in English | MEDLINE | ID: mdl-31883890

ABSTRACT

Mycobacterium leprae, causative organism of leprosy, is known to counter redox stress generated by reactive oxygen species (ROS) during its survival inside host macrophages. But, the involvement of any antigenic protein(s) for countering such redox stress is still unknown. Interestingly, M. leprae HSP18, an important antigenic protein that helps in the growth and survival of M. leprae pathogen inside host macrophages, is induced under redox stress. Moreover, HSP18 also interacts with Cu2+. Copper (II) can induce redox stress via Fenton reaction. But, whether HSP18 suppresses Cu2+ mediated ROS generation, is still far from clear. Also, the effect of redox stress on its structure and function is not known. In this study, we show that HSP18 efficiently suppresses Cu2+ mediated generation of ROS and also prevents the redox mediated aggregation of a client protein (γD-crystallin). Upon exposure to substantial redox stress, irreversible perturbation in the secondary and tertiary structure of HSP18 and the tryptophan and tyrosine oxidation are evidenced. Interestingly, HSP18 retains a considerable amount of functionality even after being exposed to substantial redox stress. Perhaps, the redox scavenging ability as well as the chaperone function of HSP18 may possibly help M. leprae pathogen to counter redox stress inside host macrophages.


Subject(s)
Bacterial Proteins/metabolism , Copper/metabolism , Heat-Shock Proteins/metabolism , Mycobacterium leprae/metabolism , Reactive Oxygen Species/metabolism , Ascorbic Acid/metabolism , Bacterial Proteins/genetics , Bacterial Proteins/pharmacology , Heat-Shock Proteins/genetics , Heat-Shock Proteins/pharmacology , Hydrogen Peroxide/metabolism , Hydroxyl Radical/metabolism , Macrophages/microbiology , Molecular Chaperones/metabolism , Mycobacterium leprae/genetics , Oxidation-Reduction/drug effects , Recombinant Proteins , Tyrosine/metabolism
11.
Cell Death Discov ; 5: 112, 2019.
Article in English | MEDLINE | ID: mdl-31285855

ABSTRACT

Axonal degeneration and death of retinal ganglion cells (RGCs) are the primary causes of vision loss in glaucoma. In this study, we evaluated the efficacy of a peptide (peptain-1) that exhibits robust chaperone and anti-apoptotic activities against RGC loss in two rodent models and in cultured RGCs. In cultures of rat primary RGCs and in rat retinal explants peptain-1 significantly decreased hypoxia-induced RGC loss when compared to a scrambled peptide. Intraperitoneally (i.p.) injected peptain-1 (conjugated to a Cy7 fluorophore) was detected in the retina indicative of its ability to cross the blood-retinal barrier. Peptain-1 treatment inhibited RGC loss in the retina of mice subjected to ischemia/reperfusion (I/R) injury. A reduction in anterograde axonal transport was also ameliorated by peptain-1 treatment in the retina of I/R injured mice. Furthermore, i.p. injections of peptain-1 significantly reduced RGC death and axonal loss and partially restored retinal mitochondrial cytochrome c oxidase subunit 6b2 (COX 6b2) levels in rats subjected to five weeks of elevated intraocular pressure. We conclude that i.p. injected peptain-1 gains access to the retina and protects both RGC somas and axons against the injury caused by I/R and ocular hypertension. Based on these findings, peptain-1 has the potential to be developed as an efficacious neuroprotective agent for the treatment of glaucoma.

12.
Exp Eye Res ; 182: 1-9, 2019 05.
Article in English | MEDLINE | ID: mdl-30849386

ABSTRACT

Acetylation of lysine residues occurs in lens proteins. Previous studies have shown an improvement in the chaperone activity of αA-crystallin upon acetylation. Sirtuins are NAD+-dependent enzymes that can deacylate proteins. The roles of sirtuins in regulating the acetylation of lens proteins and their impacts on the function of α-crystallin are not known. Here, we detected sirtuin activity in mouse lenses, and SIRT3 and SIRT5 were present primarily in the mitochondria of cultured primary mouse lens epithelial cells. Western blotting showed higher levels of protein acetylation in the lenses of SIRT3 KO and SIRT5 KO mice than in lenses of WT mice. Mass spectrometry analyses revealed a greater number of acetylated lysine residues in α-crystallin isolated from the SIRT3 and SIRT5 KO lenses than from WT lenses. α-Crystallin isolated from SIRT3 and SIRT5 KO lenses displayed a higher surface hydrophobicity and higher chaperone activity than the protein isolated from WT lenses. Thus, SIRTs regulate the acetylation levels of crystallins in mouse lenses, and acetylation in lenses enhances the chaperone activity of α-crystallin.


Subject(s)
Cataract/genetics , Gene Expression Regulation , Lens, Crystalline/metabolism , Molecular Chaperones/metabolism , Sirtuin 3/genetics , Sirtuins/genetics , alpha-Crystallins/genetics , Acetylation , Animals , Blotting, Western , Cataract/metabolism , Disease Models, Animal , Mass Spectrometry , Mice , Mice, Inbred C57BL , Mice, Knockout , RNA/genetics , Sirtuin 3/biosynthesis , Sirtuins/biosynthesis , alpha-Crystallins/metabolism
13.
J Immunol Methods ; 467: 37-47, 2019 04.
Article in English | MEDLINE | ID: mdl-30738041

ABSTRACT

αB-Crystallin is a member of the small heat shock protein family. It is a molecular chaperone and an anti-apoptotic protein. Previous studies have shown that the peptide (73DRFSVNLDVKHFSPEELKVKV93, hereafter referred to as peptain-1) from the core domain of αB-crystallin exhibits both chaperone and anti-apoptotic properties similar to the parent protein. We developed a mouse monoclonal antibody against peptain-1 with the aim of blocking the functions of αB-crystallin. The antibody reacted with peptain-1, it did not react with the chaperone peptide of αA-crystallin. The antibody strongly reacted with human recombinant αB-crystallin but weakly with Hsp20; it did not react with αA-crystallin or Hsp27. The antibody specifically reacted with αB-crystallin in human and mouse lens proteins but not with αA-crystallin. The antibody reacted with αB-crystallin in human lens epithelial cells, human retinal endothelial cells, and with peptain-1 in peptain-1-transduced cells. Unlike the commercial antibodies against αB-crystallin, the antibody against peptain-1 inhibited the chaperone and anti-apoptotic activities of peptain-1. The antibody might find use in inhibiting αB-crystallin's chaperone and anti-apoptotic activities in diseases where αB-crystallin is a causative or contributing factor.


Subject(s)
Antibodies, Monoclonal/immunology , Apoptosis/drug effects , alpha-Crystallin B Chain/antagonists & inhibitors , Animals , Apoptosis/immunology , Mice , Mice, Inbred BALB C , alpha-Crystallin B Chain/immunology
14.
Biochemistry ; 58(9): 1260-1274, 2019 03 05.
Article in English | MEDLINE | ID: mdl-30758948

ABSTRACT

Acylation of lysine residues is a common post-translational modification of cellular proteins. Here, we show that lysine succinylation, a type of acylation, occurs in human lens proteins. All of the major crystallins exhibited Nε-succinyllysine (SuccK) residues. Quantification of SuccK in human lens proteins (from donors between the ages of 20 and 73 years) by LC-MS/MS showed a range between 1.2 and 14.3 pmol/mg lens protein. The total SuccK levels were slightly reduced in aged lenses (age > 60 years) relative to young lenses (age < 30 years). Immunohistochemical analyses revealed that SuccK was present in epithelium and fiber cells. Western blotting and immunoprecipitation experiments revealed that SuccK is particularly prominent in αB-crystallin, and succinylation in vitro revealed that αB-crystallin is more prone to succinylation than αA-crystallin. Mass spectrometric analyses showed succinylation at K72, K90, K92, K166, K175, and potentially K174 in human lens αB-crystallin. We detected succinylation at K72, K82, K90, K92, K103, K121, K150, K166, K175, and potentially K174 by mass spectrometry in mildly succinylated αB-crystallin. Mild succinylation improved the chaperone activity of αB-crystallin along with minor perturbation in tertiary and quaternary structure of the protein. These observations imply that succinylation is beneficial to αB-crystallin by improving its chaperone activity with only mild conformational alterations.


Subject(s)
Lens, Crystalline/metabolism , Lysine/analysis , Lysine/metabolism , alpha-Crystallin B Chain/metabolism , Adult , Age Factors , Aged , Chromatography, Liquid , Circular Dichroism , Crystallins/metabolism , Gain of Function Mutation , Humans , Lens, Crystalline/chemistry , Middle Aged , Molecular Chaperones/chemistry , Molecular Chaperones/genetics , Molecular Chaperones/metabolism , Protein Conformation , Succinates/metabolism , Tandem Mass Spectrometry , alpha-Crystallin B Chain/chemistry , alpha-Crystallin B Chain/genetics
15.
J Inorg Biochem ; 188: 62-75, 2018 11.
Article in English | MEDLINE | ID: mdl-30121399

ABSTRACT

Mycobacterium leprae uptakes various bivalent metal ions via different transporters in host species. Uptake of Cu2+ and Zn2+ are essential for generation of superoxide dismutases and catalases, which provide defense against reactive oxygen species mediated death of this pathogen in macrophages. Furthermore, it has also been noticed that levels of different bivalent metal ions (Ca2+, Mg2+, Cu2+ and Zn2+) in blood serum are altered in leprotic patients. Mycobacterium leprae HSP18 is an immunodominant antigen which helps in growth and survival of Mycobacterium leprae in host species. A possible link can exist between HSP18 and aberration of bivalent metal ion homeostasis. Therefore, we investigated the interaction of these four bivalent metal ions with HSP18 and found that the protein only interacts with Zn2+ and Cu2+. Such association process is reversible and moderately high affinity in nature with unit binding stoichiometry. Theoretical studies revealed that the most probable site for Zn2+-binding lies in the N-terminal domain; While, the same for Cu2+-binding lies in the "α-crystallin domain" of HSP18. Binding of Zn2+/Cu2+ to HSP18 brings about subtle changes in the secondary and tertiary structure of HSP18 but are distinctly opposite in nature. While Zn2+ causes oligomeric association, Cu2+ leads to oligomeric dissociation of HSP18. Structural stability, surface hydrophobicity and chaperone activity of HSP18 are enhanced on Zn2+ binding, while all of them are reduced upon Cu2+ binding. Altogether, metal ions binding to HSP18 regulate its function which may have far reaching effect on the survival and pathogenicity of Mycobacterium leprae in host species.


Subject(s)
Bacterial Proteins/chemistry , Copper/chemistry , Heat-Shock Proteins/chemistry , Mycobacterium leprae/chemistry , Zinc/chemistry , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Cations, Divalent/chemistry , Cations, Divalent/metabolism , Copper/metabolism , Heat-Shock Proteins/genetics , Heat-Shock Proteins/metabolism , Humans , Mycobacterium leprae/genetics , Mycobacterium leprae/metabolism , Protein Binding , Zinc/metabolism
16.
Int J Biol Macromol ; 119: 604-616, 2018 Nov.
Article in English | MEDLINE | ID: mdl-30055280

ABSTRACT

Ultraviolet radiation, an effective sterilizing source, rapidly kills the causative organism (Mycobacterium leprae) of leprosy. But, the reasons behind this quick death are not clearly understood. Also, the impact of UV radiation on the antigen(s) which is/are responsible for the survival of this pathogen is still unknown. Many reports have revealed that M. leprae secrets a major immunodominant antigen, namely HSP18, whose chaperone function plays an important role in the growth and survival of this pathogen under various environmental insults. However, the effect of UV radiation on its structure and chaperone function is still unclear. Therefore, we have taken a thorough attempt to understand these two aspects of HSP18 under different UV radiations (UVA/UVB/UVC; doses: 1-50 J/cm2). Our study revealed that its chaperone function is decreased significantly with increasing doses of various UV radiations. These different UV irradiations perturb only its tertiary structure and induce tryptophan and tyrosine photo-oxidation to N-formyl kynurenine, kynurenine and dityrosine. Such photo-oxidation promotes the subunit cross-linking within a HSP18 oligomer, lowers the surface hydrophobicity and thermostability of the protein. All these factors together damage/reduce the chaperone function of HSP18 which may be an important factor behind the rapid death of M. leprae under UV exposure.


Subject(s)
Bacterial Proteins/chemistry , Bacterial Proteins/metabolism , Heat-Shock Proteins/chemistry , Heat-Shock Proteins/metabolism , Mycobacterium leprae/metabolism , Mycobacterium leprae/radiation effects , Ultraviolet Rays , Amino Acid Sequence , Dose-Response Relationship, Radiation , Microbial Viability/radiation effects , Mycobacterium leprae/physiology , Structure-Activity Relationship
17.
Spectrochim Acta A Mol Biomol Spectrosc ; 173: 196-200, 2017 Feb 15.
Article in English | MEDLINE | ID: mdl-27661666

ABSTRACT

Combination of pyridine, antipyrine and indole in a single molecule (L2) allows selective recognition of Fe3+ colorimetrically in CH3CN. The structure of L2 is confirmed from single crystal X-ray diffraction analysis. The probe displays two different visible bands at 541nm and 715nm in the presence of Fe3+, associated with two different colors, viz. green and pink-violet allowing determination of unknown Fe3+ concentration. Interestingly, removal of 2-picolyl group from indole N-center of L2 generates L3 that behaves similarly at low Fe3+ concentration (>0 to 1.1mM) but differently at higher Fe3+ concentration (>1.1mM), indicating involvement of pyridyl-N donor towards Fe3+, and hence different coordination environment around Fe3+ at higher concentration.

18.
FEBS J ; 284(2): 277-300, 2017 01.
Article in English | MEDLINE | ID: mdl-27885799

ABSTRACT

Mycobacterium tuberculosis is a human pathogen that secretes a major immunodominant antigen, namely Hsp16.3, throughout the course of infection. Hsp16.3 belongs to the small heat shock protein family and exhibits a molecular chaperone function that is important for the growth and survival of M. tuberculosis in host cell macrophages. The importance of the N-terminal region for the structure and chaperone function of Hsp16.3 is well understood. However, the effect of the C-terminal region on these properties is far from clear. Therefore, we cloned, over-expressed and purified wild-type and seven C-terminal-truncated mutant proteins of Hsp16.3. Mutants with deletions of one and two C-terminal extension (CTE) residues had a structure and chaperone function similar to wild-type protein. Intriguingly, deletion of three residues from the CTE triggered perturbation of the tertiary structure, dissociation of the oligomeric assembly (dodecamer to octamer and dimer), enhancement of subunit exchange dynamics and improvement in the chaperone function of Hsp16.3. Interestingly, these structural modulations (except oligomeric dissociation) as well as chaperoning strength reached their apex upon truncation of the entire CTE (141 RSTN144 ). Further deletions from the C-terminal region beyond the CTE increased only the degree of oligomeric dissociation, and the complete removal of this region made the protein into a dimer. Overall, our study suggests a 'new structural element' in the C-terminal region, i.e. the C-terminal extension, which plays an important role in the oligomerization, subunit exchange dynamics and chaperone function of Hsp16.3.


Subject(s)
Bacterial Proteins/metabolism , Chaperonins/metabolism , Mycobacterium tuberculosis/chemistry , Protein Subunits/metabolism , Amino Acid Motifs , Bacterial Proteins/genetics , Chaperonins/genetics , Cloning, Molecular , Escherichia coli/genetics , Escherichia coli/metabolism , Gene Expression , Mutation , Mycobacterium tuberculosis/metabolism , Protein Domains , Protein Multimerization , Protein Subunits/genetics , Recombinant Proteins/genetics , Recombinant Proteins/metabolism
19.
J Mol Recognit ; 29(7): 303-7, 2016 07.
Article in English | MEDLINE | ID: mdl-26792561

ABSTRACT

Naphthalene has emission in the ultraviolet (UV) region, limiting its trace level determination in biological and environmental samples due to detrimental effect of UV light on the living cell and interference from other substances having emission in the UV region. Fluorescence resonance energy transfer strategy is adopted for determination of traces naphthalene in the visible region. Significant improvement of lowest detection limit of naphthalene has been achieved through tuning of fluorescence resonance energy transfer efficiency. Anthranilic acid pyrene (ANP) conjugate provides lowest detection limit for naphthalene among three probes studied, viz. ANB, aniline- pyrene conjugate (APA) and ANP. ANP efficiently measures naphthalene content in river water. Copyright © 2016 John Wiley & Sons, Ltd.


Subject(s)
Fluorescence Resonance Energy Transfer/methods , Naphthalenes/analysis , Water Pollutants, Chemical/analysis , Environmental Monitoring , Fluorescent Dyes/chemistry , Limit of Detection , Pyrenes/chemistry , Rivers
20.
Biochim Biophys Acta ; 1860(1 Pt B): 199-210, 2016 Jan.
Article in English | MEDLINE | ID: mdl-26080000

ABSTRACT

BACKGROUND: α-Crystallin is a major protein of the eye lens in vertebrates. It is composed of two subunits, αA- and αB-crystallin. α-Crystallin is an oligomeric protein having these two subunits in 3:1 ratio. It belongs to small heat shock protein family and exhibits molecular chaperone function, which plays an important role in maintaining the lens transparency. Apart from chaperone function, both subunits also exhibit anti-apoptotic property. Comparison of their primary sequences reveals that αA- and αB-crystallin posses 13 and 14 arginine residues, respectively. Several of them undergo mutations which eventually lead to various eye diseases such as congenital cataract, juvenile cataract, and retinal degeneration. Interestingly, many arginine residues of these subunits are modified during glycation and even some are truncated during aging. All these facts indicate the importance of arginine residues in α-crystallin. SCOPE OF REVIEW: In this review, we will emphasize the recent in vitro and in vivo findings related to congenital cataract causing arginine mutations in α-crystallin. MAJOR CONCLUSIONS: Congenital cataract causing arginine mutations alters the structure and decreases the chaperone function of α-crystallin. These mutations also affect the lens morphology and phenotypes. Interestingly, non-natural arginine mutations (generated for mimicking the glycation and truncation environment) improve the chaperone function of α-crystallin which may play an important role in maintaining the eye lens transparency during aging. GENERAL SIGNIFICANCE: The neutralization of positive charge on the guanidino group of arginine residues is not always detrimental to the functionality of α-crystallin. This article is part of a Special Issue entitled Crystallin Biochemistry in Health and Disease.


Subject(s)
Arginine/chemistry , Arginine/genetics , Cataract/genetics , Crystallins/genetics , Lens, Crystalline/metabolism , Mutation , alpha-Crystallin B Chain/genetics , Amino Acid Sequence , Animals , Base Sequence , Cataract/metabolism , Crystallins/chemistry , Crystallins/physiology , Humans , Lens, Crystalline/chemistry , Molecular Sequence Data , Mutagenesis, Site-Directed , Structure-Activity Relationship , alpha-Crystallin B Chain/chemistry , alpha-Crystallin B Chain/physiology , alpha-Crystallins/chemistry , alpha-Crystallins/genetics , alpha-Crystallins/physiology
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