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1.
Euro Surveill ; 28(42)2023 10.
Article in English | MEDLINE | ID: mdl-37855903

ABSTRACT

BackgroundTick-borne encephalitis (TBE) is a disease which can lead to severe neurological symptoms, caused by the TBE virus (TBEV). The natural transmission cycle occurs in foci and involves ticks as vectors and several key hosts that act as reservoirs and amplifiers of the infection spread. Recently, the incidence of TBE in Europe has been rising in both endemic and new regions.AimIn this study we want to provide comprehensive understanding of the main ecological and environmental factors that affect TBE spread across Europe.MethodsWe searched available literature on covariates linked with the circulation of TBEV in Europe. We then assessed the best predictors for TBE incidence in 11 European countries by means of statistical regression, using data on human infections provided by the European Surveillance System (TESSy), averaged between 2017 and 2021.ResultsWe retrieved data from 62 full-text articles and identified 31 different covariates associated with TBE occurrence. Finally, we selected eight variables from the best model, including factors linked to vegetation cover, climate, and the presence of tick hosts.DiscussionThe existing literature is heterogeneous, both in study design and covariate types. Here, we summarised and statistically validated the covariates affecting the variability of TBEV across Europe. The analysis of the factors enhancing disease emergence is a fundamental step towards the identification of potential hotspots of viral circulation. Hence, our results can support modelling efforts to estimate the risk of TBEV infections and help decision-makers implement surveillance and prevention campaigns.


Subject(s)
Encephalitis Viruses, Tick-Borne , Encephalitis, Tick-Borne , Ixodes , Ticks , Animals , Humans , Encephalitis, Tick-Borne/prevention & control , Europe/epidemiology , Climate
2.
Commun Biol ; 4(1): 1141, 2021 09 30.
Article in English | MEDLINE | ID: mdl-34593969

ABSTRACT

Tropical fruit flies are considered among the most economically important invasive species detected in temperate areas of the United States and the European Union. Detections often trigger quarantine and eradication programs that are conducted without a holistic understanding of the threat posed. Weather-driven physiologically-based demographic models are used to estimate the geographic range, relative abundance, and threat posed by four tropical tephritid fruit flies (Mediterranean fruit fly, melon fly, oriental fruit fly, and Mexican fruit fly) in North and Central America, and the European-Mediterranean region under extant and climate change weather (RCP8.5 and A1B scenarios). Most temperate areas under tropical fruit fly propagule pressure have not been suitable for establishment, but suitability is predicted to increase in some areas with climate change. To meet this ongoing challenge, investments are needed to collect sound biological data to develop mechanistic models to predict the geographic range and relative abundance of these and other invasive species, and to put eradication policies on a scientific basis.


Subject(s)
Animal Distribution , Climate Change , Introduced Species , Tephritidae , Animals , Central America , Mediterranean Region , North America , Species Specificity , United States
3.
Article in English | MEDLINE | ID: mdl-29649132

ABSTRACT

The incidence of tick-borne diseases caused by Borrelia burgdorferi sensu lato, Anaplasma phagocytophilum and Rickettsia spp. has been rising in Europe in recent decades. Early pre-assessment of acarological hazard still represents a complex challenge. The aim of this study was to model Ixodes ricinus questing nymph density and its infection rate with B. burgdorferi s.l., A. phagocytophilum and Rickettsia spp. in five European countries (Italy, Germany, Czech Republic, Slovakia, Hungary) in various land cover types differing in use and anthropisation (agricultural, urban and natural) with climatic and environmental factors (Normalized Difference Vegetation Index (NDVI), Normalized Difference Water Index (NDWI), Land Surface Temperature (LST) and precipitation). We show that the relative abundance of questing nymphs was significantly associated with climatic conditions, such as higher values of NDVI recorded in the sampling period, while no differences were observed among land use categories. However, the density of infected nymphs (DIN) also depended on the pathogen considered and land use. These results contribute to a better understanding of the variation in acarological hazard for Ixodes ricinus transmitted pathogens in Central Europe and provide the basis for more focused ecological studies aimed at assessing the effect of land use in different sites on tick-host pathogens interaction.


Subject(s)
Climate , Gram-Negative Bacteria/growth & development , Ixodes/microbiology , Spatio-Temporal Analysis , Anaplasma phagocytophilum/growth & development , Animals , Borrelia burgdorferi/growth & development , Europe/epidemiology , Nymph , Rickettsia/growth & development
4.
Sci Total Environ ; 578: 417-426, 2017 Feb 01.
Article in English | MEDLINE | ID: mdl-27839756

ABSTRACT

The availability of more than thirty years of historical satellite data is a valuable source which could be used as an alternative to the sparse in-situ data. We developed a new homogenised time series of daily day time Lake Surface Water Temperature (LSWT) over the last thirty years (1986-2015) at a spatial resolution of 1km from thirteen polar orbiting satellites. The new homogenisation procedure implemented in this study corrects for the different acquisition times of the satellites standardizing the derived LSWT to 12:00 UTC. In this study, we developed new time series of LSWT for five large lakes in Italy and evaluated the product with in-situ data from the respective lakes. Furthermore, we estimated the long-term annual and summer trends, the temporal coherence of mean LSWT between the lakes, and studied the intra-annual variations and long-term trends from the newly developed LSWT time series. We found a regional warming trend at a rate of 0.017°Cyr-1 annually and 0.032°Cyr-1 during summer. Mean annual and summer LSWT temporal patterns in these lakes were found to be highly coherent. Amidst the reported rapid warming of lakes globally, it is important to understand the long-term variations of surface temperature at a regional scale. This study contributes a new method to derive long-term accurate LSWT for lakes with sparse in-situ data thereby facilitating understanding of regional level changes in lake's surface temperature.

5.
Sci Rep ; 6: 31251, 2016 08 09.
Article in English | MEDLINE | ID: mdl-27502177

ABSTRACT

Availability of remotely sensed multi-spectral images since the 1980's, which cover three decades of voluminous data could help researchers to study the changing dynamics of bio-physical characteristics of land and water. In this study, we introduce a new methodology to develop homogenised Lake Surface Water Temperature (LSWT) from multiple polar orbiting satellites. Precisely, we developed homogenised 1 km daily LSWT maps covering the last 30 years (1986 to 2015) combining data from 13 satellites. We used a split-window technique to derive LSWT from brightness temperatures and a modified diurnal temperature cycle model to homogenise data which were acquired between 8:00 to 17:00 UTC. Gaps in the temporal LSWT data due to the presence of clouds were filled by applying Harmonic ANalysis of Time Series (HANTS). The satellite derived LSWT maps were validated based on long-term monthly in-situ bulk temperature measurements in Lake Garda, the largest lake in Italy. We found the satellite derived homogenised LSWT being significantly correlated to in-situ data. The new LSWT time series showed a significant annual rate of increase of 0.020 °C yr(-1) (*P < 0.05), and of 0.036 °C yr(-1) (***P < 0.001) during summer.

6.
PLoS Negl Trop Dis ; 10(6): e0004758, 2016 06.
Article in English | MEDLINE | ID: mdl-27333276

ABSTRACT

Aedes albopictus is a tropical invasive species which in the last decades spread worldwide, also colonizing temperate regions of Europe and US, where it has become a public health concern due to its ability to transmit exotic arboviruses, as well as severe nuisance problems due to its aggressive daytime outdoor biting behaviour. While several studies have been carried out in order to predict the potential limits of the species expansions based on eco-climatic parameters, few studies have so far focused on the specific effects of these variables in shaping its micro-geographic abundance and dynamics. The present study investigated eco-climatic factors affecting Ae. albopictus abundance and dynamics in metropolitan and sub-urban/rural sites in Rome (Italy), which was colonized in 1997 and is nowadays one of the most infested metropolitan areas in Southern Europe. To this aim, longitudinal adult monitoring was carried out along a 70 km-transect across and beyond the most urbanized and densely populated metropolitan area. Two fine scale spatiotemporal datasets (one with reference to a 20m circular buffer around sticky traps used to collect mosquitoes and the second to a 300m circular buffer within each sampling site) were exploited to analyze the effect of climatic and socio-environmental variables on Ae. albopictus abundance and dynamics along the transect. Results showed an association between highly anthropized habitats and high adult abundance both in metropolitan and sub-urban/rural areas, with "small green islands" corresponding to hot spots of abundance in the metropolitan areas only, and a bimodal seasonal dynamics with a second peak of abundance in autumn, due to heavy rains occurring in the preceding weeks in association with permissive temperatures. The results provide useful indications to prioritize public mosquito control measures in temperate urban areas where nuisance, human-mosquito contact and risk of local arbovirus transmission are likely higher, and highlight potential public health risks also after the summer months typically associated with high mosquito densities.


Subject(s)
Aedes/physiology , Animal Distribution/physiology , Cities , Animals , Environment , Female , Male , Population Density , Rome , Seasons , Species Specificity , Time Factors
7.
Parasit Vectors ; 9: 63, 2016 Feb 03.
Article in English | MEDLINE | ID: mdl-26842546

ABSTRACT

BACKGROUND: Invasive alien species represent a growing threat for natural systems, economy and human health. Active surveillance and responses that readily suppress newly established colonies are effective actions to mitigate the noxious consequences of biological invasions. However, when an exotic species establishes a viable population in a new area, predicting its potential spread is the most effective way to implement adequate control actions. Emerging invasive species, despite monitoring efforts, are poorly known in terms of behaviour and capacity to adapt to the new invaded range. Therefore, tools that provide information on their spread by maximising the available data, are critical. METHODS: We apply three different approaches to model the potential distribution of an emerging invasive mosquito, Aedes koreicus, in Northeast Italy: 1) an automatic statistical approach based on information theory, 2) a statistical approach integrated with prior knowledge, and 3) a GIS physiology-based approach. Each approach possessed benefits and limitations, and the required ecological information increases on a scale from 1 to 3. We validated the model outputs using the only other known invaded area in Europe. Finally, we applied a road network analysis to the suitability surface with the highest prediction power to highlight those areas with the highest likelihood of invasion. RESULTS: The GIS physiological-based model had the highest prediction power. It showed that localities currently occupied by Aedes koreicus represent only a small fraction of the potentially suitable area. Furthermore, the modelled niche included areas as high as 1500 m a.s.l., only partially overlapping with Aedes albopictus distribution. CONCLUSIONS: The simulated spread indicated that all of the suitable portion of the study area is at risk of invasion in a relatively short period of time if no control policies are implemented. Stochastic events may further boost the invasion process, whereas competition with Aedes albopictus may limit it. According to our analysis, some of the major cities in the study area may have already been invaded. Further monitoring is needed to confirm this finding. The developed models and maps represent valuable tools to inform policies aimed at eradicating or mitigating Aedes koreicus invasion in Northeast Italy and Central Europe.


Subject(s)
Aedes/growth & development , Phylogeography , Animals , Cities , Entomology , Italy , Models, Statistical
8.
PLoS One ; 10(5): e0125199, 2015.
Article in English | MEDLINE | ID: mdl-25933225

ABSTRACT

Species evolution depends on numerous and distinct forces, including demography and natural selection. For example, local adaptation and population structure affect the evolutionary history of species living along environmental clines. This is particularly relevant in plants, which are often characterized by limited dispersal ability and the need to respond to abiotic and biotic stress factors specific to the local environment. Here we study the demographic history and the possible existence of local adaptation in two related species of Brassicaceae, Cardamine impatiens and Cardamine resedifolia, which occupy separate habitats along the elevation gradient. Previous genome-wide analyses revealed the occurrence of distinct selective pressures in the two species, with genes involved in cold response evolving particularly fast in C. resedifolia. In this study we surveyed patterns of molecular evolution and genetic variability in a set of 19 genes, including neutral and candidate genes involved in cold response, across 10 populations each of C. resedifolia and C. impatiens from the Italian Alps (Trentino). We inferred the population structure and demographic history of the two species, and tested the occurrence of signatures of local adaptation in these genes. The results indicate that, despite a slightly higher population differentiation in C. resedifolia than in C. impatiens, both species are only weakly structured and that populations sampled at high altitude experience less gene flow than low-altitude ones. None of the genes showed signatures of positive selection, suggesting that they do not seem to play relevant roles in the current evolutionary processes of adaptation to alpine environments of these species.


Subject(s)
Adaptation, Physiological , Cardamine/physiology , Ecosystem , Bayes Theorem , Cardamine/genetics , Climate , Gene Amplification , Genes, Plant , Genetics, Population , Italy , Models, Biological , Molecular Sequence Data , Nucleotides/genetics , Polymorphism, Genetic , Population Dynamics
9.
PLoS One ; 10(3): e0121158, 2015.
Article in English | MEDLINE | ID: mdl-25803814

ABSTRACT

West Nile Virus (WNV) is a globally important mosquito borne virus, with significant implications for human and animal health. The emergence and spread of new lineages, and increased pathogenicity, is the cause of escalating public health concern. Pinpointing the environmental conditions that favour WNV circulation and transmission to humans is challenging, due both to the complexity of its biological cycle, and the under-diagnosis and reporting of epidemiological data. Here, we used remote sensing and GIS to enable collation of multiple types of environmental data over a continental spatial scale, in order to model annual West Nile Fever (WNF) incidence across Europe and neighbouring countries. Multi-model selection and inference were used to gain a consensus from multiple linear mixed models. Climate and landscape were key predictors of WNF outbreaks (specifically, high precipitation in late winter/early spring, high summer temperatures, summer drought, occurrence of irrigated croplands and highly fragmented forests). Identification of the environmental conditions associated with WNF outbreaks is key to enabling public health bodies to properly focus surveillance and mitigation of West Nile virus impact, but more work needs to be done to enable accurate predictions of WNF risk.


Subject(s)
Disease Outbreaks/statistics & numerical data , Environment , West Nile Fever/epidemiology , West Nile virus/genetics , Europe/epidemiology , Geographic Information Systems , Humans , Linear Models , Population Dynamics , Remote Sensing Technology/methods , Species Specificity
10.
Anal Chim Acta ; 853: 384-390, 2015 Jan 01.
Article in English | MEDLINE | ID: mdl-25467483

ABSTRACT

In this study, we investigated the relationship between (D/H)1, (D/H)2 and δ(13)C of ethanol and δ(18)O of water in wine, and variables describing the climate and the geography of the production area, using exploratory visualisation tools, regression analysis and linear modelling. For the first time, a large amount of data (around 4000 wine samples collected over 11 years in Italy) and all the official isotopic parameters, as well as a large number of significant climatic and geographical descriptors (date of harvest, latitude, longitude, elevation, distance from the sea, amount of precipitation, maximum daily temperature, minimum daily temperature, mean daily temperature, δ(18)O and δ(2)H of precipitation) were considered. δ(18)O, followed by (D/H)1, was shown to have the strongest relationship with climate and location. The dominant variables were latitude, with a negative relationship, δ(18)O and δ(2)H of precipitation and temperature, both with positive relationships. The identified correlations and models could be used to predict the isotopic composition of authentic wines, offering increased possibilities for detecting fraud and mislabelling.

11.
Parasit Vectors ; 7: 269, 2014 Jun 12.
Article in English | MEDLINE | ID: mdl-24924622

ABSTRACT

BACKGROUND: West Nile Virus (WNV) is an emerging global health threat. Transmission risk is strongly related to the abundance of mosquito vectors, typically Culex pipiens in Europe. Early-warning predictors of mosquito population dynamics would therefore help guide entomological surveillance and thereby facilitate early warnings of transmission risk. METHODS: We analysed an 11-year time series (2001 to 2011) of Cx. pipiens mosquito captures from the Piedmont region of north-western Italy to determine the principal drivers of mosquito population dynamics. Linear mixed models were implemented to examine the relationship between Cx. pipiens population dynamics and environmental predictors including temperature, precipitation, Normalized Difference Water Index (NDWI) and the proximity of mosquito traps to urban areas and rice fields. RESULTS: Warm temperatures early in the year were associated with an earlier start to the mosquito season and increased season length, and later in the year, with decreased abundance. Early precipitation delayed the start and shortened the length of the mosquito season, but increased total abundance. Conversely, precipitation later in the year was associated with a longer season. Finally, higher NDWI early in the year was associated with an earlier start to the season and increased season length, but was not associated with abundance. Proximity to rice fields predicted higher total abundance when included in some models, but was not a significant predictor of phenology. Proximity to urban areas was not a significant predictor in any of our models. Predicted variations in start of the season and season length ranged from one to three weeks, across the measured range of variables. Predicted mosquito abundance was highly variable, with numbers in excess of 1000 per trap per year when late season temperatures were low (average 21°C) to only 150 when late season temperatures were high (average 30°C). CONCLUSIONS: Climate data collected early in the year, in conjunction with local land use, can be used to provide early warning of both the timing and magnitude of mosquito outbreaks. This potentially allows targeted mosquito control measures to be implemented, with implications for prevention and control of West Nile Virus and other mosquito borne diseases.


Subject(s)
Culex/physiology , Culex/virology , Insect Vectors/physiology , West Nile virus/physiology , Agriculture , Animals , Climate , Humans , Italy , Population Density , Seasons , Temperature , Time Factors
12.
Viruses ; 6(1): 201-22, 2014 Jan 14.
Article in English | MEDLINE | ID: mdl-24424500

ABSTRACT

We use a Species Distribution Modeling (SDM) approach along with Geographic Information Systems (GIS) techniques to examine the potential distribution of hantavirus pulmonary syndrome (HPS) caused by Andes virus (ANDV) in southern Argentina and, more precisely, define and estimate the area with the highest infection probability for humans, through the combination with the distribution map for the competent rodent host (Oligoryzomys longicaudatus). Sites with confirmed cases of HPS in the period 1995-2009 were mostly concentrated in a narrow strip (~90 km × 900 km) along the Andes range from northern Neuquén to central Chubut province. This area is characterized by high mean annual precipitation (~1,000 mm on average), but dry summers (less than 100 mm), very low percentages of bare soil (~10% on average) and low temperatures in the coldest month (minimum average temperature -1.5 °C), as compared to the HPS-free areas, features that coincide with sub-Antarctic forests and shrublands (especially those dominated by the invasive plant Rosa rubiginosa), where rodent host abundances and ANDV prevalences are known to be the highest. Through the combination of predictive distribution maps of the reservoir host and disease cases, we found that the area with the highest probability for HPS to occur overlaps only 28% with the most suitable habitat for O. longicaudatus. With this approach, we made a step forward in the understanding of the risk factors that need to be considered in the forecasting and mapping of risk at the regional/national scale. We propose the implementation and use of thematic maps, such as the one built here, as a basic tool allowing public health authorities to focus surveillance efforts and normally scarce resources for prevention and control actions in vast areas like southern Argentina.


Subject(s)
Hantavirus Pulmonary Syndrome/epidemiology , Orthohantavirus/isolation & purification , Zoonoses/epidemiology , Animals , Argentina/epidemiology , Disease Reservoirs , Geographic Information Systems , Hantavirus Pulmonary Syndrome/transmission , Hantavirus Pulmonary Syndrome/virology , Humans , Risk Assessment , Sigmodontinae/growth & development , Topography, Medical , Zoonoses/transmission , Zoonoses/virology
13.
PLoS One ; 8(12): e82090, 2013.
Article in English | MEDLINE | ID: mdl-24349190

ABSTRACT

BACKGROUND: Over the last 30 years, the Asian tiger mosquito, Aedes albopictus, has rapidly spread around the world. The European distribution comprises the Mediterranean basin with a first appearance in Switzerland in 2003. Early identification of the most suitable areas in Switzerland allowing progressive invasion by this species is considered crucial to suggest adequate surveillance and control plans. METHODOLOGY/PRINCIPAL FINDINGS: We identified the most suitable areas for invasion and establishment of Ae. albopictus in Switzerland. The potential distribution areas linked to the current climatic suitability were assessed using remotely sensed land surface temperature data recorded by the MODIS satellite sensors. Suitable areas for adult survival and overwintering of diapausing eggs were also identified for future climatic conditions, considering two different climate change scenarios (A1B, A2) for the periods 2020-2049 and 2045-2074. At present, the areas around Lake Geneva in western Switzerland provide suitable climatic conditions for Ae. albopictus. In northern Switzerland, parts of the Rhine valley, around Lake Constance, as well as the surroundings of Lake Neuchâtel, appear to be suitable for the survival at least of adult Ae. albopictus. However, these areas are characterized by winters currently being too cold for survival and development of diapausing eggs. In southern Switzerland, Ae. albopictus is already well-established, especially in the Canton of Ticino. For the years 2020-2049, the predicted possible spread of the tiger mosquito does not differ significantly from its potential current distribution. However, important expansions are obtained if the period is extended to the years 2045-2074, when Ae. albopictus may invade large new areas. CONCLUSIONS/SIGNIFICANCE: Several parts of Switzerland provide suitable climatic conditions for invasion and establishment of Ae. albopictus. The current distribution and rapid spread in other European countries suggest that the tiger mosquito will colonize new areas in Switzerland in the near future.


Subject(s)
Aedes/physiology , Introduced Species , Aedes/growth & development , Animals , Ecosystem , Geography , Models, Theoretical , Seasons , Switzerland , Temperature
15.
Int J Health Geogr ; 10: 49, 2011 Aug 03.
Article in English | MEDLINE | ID: mdl-21812983

ABSTRACT

BACKGROUND: The continuing spread of the Asian tiger mosquito Aedes albopictus in Europe is of increasing public health concern due to the potential risk of new outbreaks of exotic vector-borne diseases that this species can transmit as competent vector. We predicted the most favorable areas for a short term invasion of Ae. albopictus in north-eastern Italy using reconstructed daily satellite data time series (MODIS Land Surface Temperature maps, LST). We reconstructed more than 11,000 daily MODIS LST maps for the period 2001-09 (i.e. performed spatial and temporal gap-filling) in an Open Source GIS framework. We aggregated these LST maps over time and identified the potential distribution areas of Ae. albopictus by adapting published temperature threshold values using three variables as predictors (0°C for mean January temperatures, 11°C for annual mean temperatures and 1350 growing degree days filtered for areas with autumnal mean temperatures > 11°C). The resulting maps were integrated into the final potential distribution map and this was compared with the known current distribution of Ae. albopictus in north-eastern Italy. RESULTS: LST maps show the microclimatic characteristics peculiar to complex terrains, which would not be visible in maps commonly derived from interpolated meteorological station data. The patterns of the three indicator variables partially differ from each other, while winter temperature is the determining limiting factor for the distribution of Ae. albopictus. All three variables show a similar spatial pattern with some local differences, in particular in the northern part of the study area (upper Adige valley). CONCLUSIONS: Reconstructed daily land surface temperature data from satellites can be used to predict areas of short term invasion of the tiger mosquito with sufficient accuracy (200 m pixel resolution size). Furthermore, they may be applied to other species of arthropod of medical interest for which temperature is a relevant limiting factor. The results indicate that, during the next few years, the tiger mosquito will probably spread toward northern latitudes and higher altitudes in north-eastern Italy, which will considerably expand the range of the current distribution of this species.


Subject(s)
Aedes , Animal Migration , Culicidae , Introduced Species , Spacecraft , Animals , Forecasting , Introduced Species/statistics & numerical data , Italy , Population Dynamics , Temperature
16.
PLoS One ; 6(4): e14800, 2011 Apr 15.
Article in English | MEDLINE | ID: mdl-21525991

ABSTRACT

BACKGROUND: The tiger mosquito (Aedes albopictus), vector of several emerging diseases, is expanding into more northerly latitudes as well as into higher altitudes in northern Italy. Changes in the pattern of distribution of the tiger mosquito may affect the potential spread of infectious diseases transmitted by this species in Europe. Therefore, predicting suitable areas of future establishment and spread is essential for planning early prevention and control strategies. METHODOLOGY/PRINCIPAL FINDINGS: To identify the areas currently most suitable for the occurrence of the tiger mosquito in the Province of Trento, we combined field entomological observations with analyses of satellite temperature data (MODIS Land Surface Temperature: LST) and human population data. We determine threshold conditions for the survival of overwintering eggs and for adult survival using both January mean temperatures and annual mean temperatures. We show that the 0°C LST threshold for January mean temperatures and the 11°C threshold for annual mean temperatures provide the best predictors for identifying the areas that could potentially support populations of this mosquito. In fact, human population density and distance to human settlements appear to be less important variables affecting mosquito distribution in this area. Finally, we evaluated the future establishment and spread of this species in relation to predicted climate warming by considering the A2 scenario for 2050 statistically downscaled at regional level in which winter and annual temperatures increase by 1.5 and 1°C, respectively. CONCLUSIONS/SIGNIFICANCE: MODIS satellite LST data are useful for accurately predicting potential areas of tiger mosquito distribution and for revealing the range limits of this species in mountainous areas, predictions which could be extended to an European scale. We show that the observed trend of increasing temperatures due to climate change could facilitate further invasion of Ae. albopictus into new areas.


Subject(s)
Aedes/physiology , Climate , Ecosystem , Introduced Species/statistics & numerical data , Animals , Binomial Distribution , Geography , Humans , Italy , Linear Models , Logistic Models , Population Density , Temperature
17.
Philos Trans R Soc Lond B Biol Sci ; 365(1550): 2177-85, 2010 Jul 27.
Article in English | MEDLINE | ID: mdl-20566495

ABSTRACT

To date, the processing of wildlife location data has relied on a diversity of software and file formats. Data management and the following spatial and statistical analyses were undertaken in multiple steps, involving many time-consuming importing/exporting phases. Recent technological advancements in tracking systems have made large, continuous, high-frequency datasets of wildlife behavioural data available, such as those derived from the global positioning system (GPS) and other animal-attached sensor devices. These data can be further complemented by a wide range of other information about the animals' environment. Management of these large and diverse datasets for modelling animal behaviour and ecology can prove challenging, slowing down analysis and increasing the probability of mistakes in data handling. We address these issues by critically evaluating the requirements for good management of GPS data for wildlife biology. We highlight that dedicated data management tools and expertise are needed. We explore current research in wildlife data management. We suggest a general direction of development, based on a modular software architecture with a spatial database at its core, where interoperability, data model design and integration with remote-sensing data sources play an important role in successful GPS data handling.


Subject(s)
Animals, Wild , Behavior, Animal , Database Management Systems/instrumentation , Ecology/methods , Geographic Information Systems/instrumentation , Information Storage and Retrieval/methods , Animals , Ecology/instrumentation , Models, Theoretical
18.
J Environ Monit ; 12(4): 825-31, 2010 Apr.
Article in English | MEDLINE | ID: mdl-20383362

ABSTRACT

Few studies exist that explicitly analyse the effect of grain, i.e. the sampling unit dimension, on vascular plant species turnover (beta-diversity) among sites. While high beta-diversity is often a result of high environmental heterogeneity, remotely sensed spectral distances among sampling units may be used as a proxy of environmental gradients which spatially shape the patterns of species turnover. In this communication, we aimed to (i) test the potential relation between spectral variation and species beta-diversity in a savanna environment and to (ii) investigate the effect of grain on the achieved patterns. Field data gathered by the BIOTA Southern Africa biodiversity monitoring programme were used to model the relation between spectral variation and species turnover at different spatial grains (10 m x 10 m and 20 m x 50 m). Our results indicate that the overall fit was greater at the larger grain size, confirming the theoretical assumption that using a lower grain size would generally lead to a higher noise in the calculation of species turnover. This communication represents one of the first attempts at relating beta-diversity to spectral variation, while incorporating the effects of grain size in the study. The results of this study could have significant implications for biodiversity research and conservation planning at a regional or even larger spatial scale.


Subject(s)
Biodiversity , Geography/methods , Plants , Environmental Monitoring , Namibia
19.
PLoS One ; 4(2): e4336, 2009.
Article in English | MEDLINE | ID: mdl-19183811

ABSTRACT

BACKGROUND: The Western Tick-borne encephalitis (TBE) virus often causes devastating or lethal disease. In Europe, the number of human TBE cases has increased dramatically over the last decade, risk areas are expanding and new foci are being discovered every year. The early localisation of new TBE foci and the identification of the main risk factors associated with disease emergence represent a priority for the public health community. Although a number of socio-economic parameters have been suggested to explain TBE upsurges in eastern Europe, the principal driving factors in relatively stable western European countries have not been identified. METHODOLOGY/PRINCIPAL FINDINGS: In this paper, we analyse the correlation between the upsurge of TBE in 17 alpine provinces in northern Italy from 1992 to 2006 with climatic variables, forest structure (as a proxy for small mammal reservoir host abundance), and abundance of the principal large vertebrate tick host (roe deer), using datasets available for the last 40 years. No significant differences between the pattern of changes in climatic variables in provinces where TBE has emerged compared to provinces were no clinical TBE cases have been observed to date. Instead, the best model for explaining the increase in TBE incidence in humans in this area include changes in forest structure, in particular the ratio of coppice to high stand forest, and the density of roe deer. CONCLUSION/SIGNIFICANCE: Substantial changes in vegetation structure that improve habitat suitability for the main TBE reservoir hosts (small mammals), as well as an increase in roe deer abundance due to changes in land and wildlife management practices, are likely to be among the most crucial factors affecting the circulation potential of Western TBE virus and, consequently, the risk of TBE emergence in humans in western Europe. We believe our approach will be useful in predicting TBE risk on a wider scale.


Subject(s)
Deer/parasitology , Encephalitis, Tick-Borne/epidemiology , Animals , Encephalitis Viruses, Tick-Borne/pathogenicity , Humans , Incidence , Italy/epidemiology , Risk Factors , Tick Infestations/transmission , Tick Infestations/veterinary , Trees
20.
Geospat Health ; 1(2): 169-76, 2007 May.
Article in English | MEDLINE | ID: mdl-18686242

ABSTRACT

New human cases of tick-borne encephalitis (TBE) have recently been recorded outside the recognised foci of this disease, i.e. in the province of Trento in northern Italy. In order to predict the highest risk areas for increased TBE virus activity, we have combined cross-sectional serological data, obtained from 459 domestic goats, with analysis of the autumnal cooling rate based on Moderate Resolution Imaging Spectroradiometer (MODIS) land surface temperature (LST) data. A significant relationship between finding antibodies against the virus in serum (seroprevalence) in goats and the autumnal cooling rate was detected, indicating that the transmission intensity of the virus does not only vary spatially, but also in relation to climatic factors. Virus seroprevalence in goats was correlated with the occurrence of TBE in humans and also with the average number of forestry workers' tick bites, demonstrating that serological screening of domestic animals, combined with an analysis of the autumnal cooling rate, can be used as early-warning predictors of TBE risk in humans.


Subject(s)
Encephalitis Viruses, Tick-Borne/isolation & purification , Encephalitis, Tick-Borne/epidemiology , Animals , Animals, Domestic , Antibodies/analysis , Climate , Encephalitis Viruses, Tick-Borne/immunology , Encephalitis, Tick-Borne/immunology , Encephalitis, Tick-Borne/parasitology , Geographic Information Systems , Goats/immunology , Humans , Italy/epidemiology , Risk Assessment , Seasons , Seroepidemiologic Studies
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