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1.
Development ; 143(1): 113-22, 2016 Jan 01.
Article in English | MEDLINE | ID: mdl-26732840

ABSTRACT

The vertebrate heart forms through successive phases of cardiomyocyte differentiation. Initially, cardiomyocytes derived from first heart field (FHF) progenitors assemble the linear heart tube. Thereafter, second heart field (SHF) progenitors differentiate into cardiomyocytes that are accreted to the poles of the heart tube over a well-defined developmental window. Although heart tube elongation deficiencies lead to life-threatening congenital heart defects, the variables controlling the initiation, rate and duration of myocardial accretion remain obscure. Here, we demonstrate that the AP-1 transcription factor, Fos-like antigen 2 (Fosl2), potentiates the rate of myocardial accretion from the zebrafish SHF. fosl2 mutants initiate accretion appropriately, but cardiomyocyte production is sluggish, resulting in a ventricular deficit coupled with an accumulation of SHF progenitors. Surprisingly, mutant embryos eventually correct the myocardial deficit by extending the accretion window. Overexpression of Fosl2 also compromises production of SHF-derived ventricular cardiomyocytes, a phenotype that is consistent with precocious depletion of the progenitor pool. Our data implicate Fosl2 in promoting the progenitor to cardiomyocyte transition and uncover the existence of regulatory mechanisms to ensure appropriate SHF-mediated cardiomyocyte contribution irrespective of embryonic stage.


Subject(s)
Cell Differentiation/physiology , Fos-Related Antigen-2/metabolism , Heart/embryology , Myocytes, Cardiac/cytology , Transcription Factor AP-1/metabolism , Zebrafish/embryology , Amino Acid Sequence , Animals , Animals, Genetically Modified , Cell Proliferation/genetics , Fos-Related Antigen-2/biosynthesis , Fos-Related Antigen-2/genetics , Gene Expression Regulation, Developmental , Gene Knockout Techniques , Heart Defects, Congenital/genetics , Myocardium/cytology , Sequence Analysis, Protein , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism
2.
Nat Commun ; 6: 8146, 2015 Aug 26.
Article in English | MEDLINE | ID: mdl-26306682

ABSTRACT

The vertebrate heart muscle (myocardium) develops from the first heart field (FHF) and expands by adding second heart field (SHF) cells. While both lineages exist already in teleosts, the primordial contributions of FHF and SHF to heart structure and function remain incompletely understood. Here we delineate the functional contribution of the FHF and SHF to the zebrafish heart using the cis-regulatory elements of the draculin (drl) gene. The drl reporters initially delineate the lateral plate mesoderm, including heart progenitors. Subsequent myocardial drl reporter expression restricts to FHF descendants. We harnessed this unique feature to uncover that loss of tbx5a and pitx2 affect relative FHF versus SHF contributions to the heart. High-resolution physiology reveals distinctive electrical properties of each heart field territory that define a functional boundary within the single zebrafish ventricle. Our data establish that the transcriptional program driving cardiac septation regulates physiologic ventricle partitioning, which successively provides mechanical advantages of sequential contraction.


Subject(s)
Heart Atria/embryology , Heart Ventricles/embryology , Myocardium/metabolism , Myocytes, Cardiac/metabolism , Zebrafish Proteins/genetics , Animals , Animals, Genetically Modified , Cadherins/genetics , Cadherins/metabolism , Embryo, Nonmammalian , Gene Expression Regulation, Developmental , Heart/embryology , Heart Atria/metabolism , Heart Ventricles/metabolism , LIM Domain Proteins/genetics , LIM Domain Proteins/metabolism , Latent TGF-beta Binding Proteins/genetics , Latent TGF-beta Binding Proteins/metabolism , Mesoderm/embryology , Mesoderm/metabolism , Myosin Light Chains/genetics , Myosin Light Chains/metabolism , Regulatory Elements, Transcriptional/genetics , Salivary Proteins and Peptides/genetics , Salivary Proteins and Peptides/metabolism , T-Box Domain Proteins/genetics , T-Box Domain Proteins/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Zebrafish , Zebrafish Proteins/metabolism
3.
Nat Cell Biol ; 15(11): 1362-9, 2013 Nov.
Article in English | MEDLINE | ID: mdl-24161929

ABSTRACT

The pharyngeal arch arteries (PAAs) are transient embryonic blood vessels that make indispensable contributions to the carotid arteries and great vessels of the heart, including the aorta and pulmonary arteries. During embryogenesis, the PAAs appear in a craniocaudal sequence to connect pre-existing segments of the primitive circulation after de novo vasculogenic assembly from angioblast precursors. Despite the unique spatiotemporal characteristics of PAA development, the embryonic origins of PAA angioblasts and the genetic factors regulating their emergence remain unknown. Here, we identify the embryonic source of PAA endothelium as nkx2.5(+) progenitors in lateral plate mesoderm long considered to adopt cell fates within the heart exclusively. Further, we report that PAA endothelial differentiation relies on Nkx2.5, a canonical cardiac transcription factor not previously implicated in blood vessel formation. Together, these studies reveal the heart field origin of PAA endothelium and attribute a new vasculogenic function to the cardiac transcription factor Nkx2.5 during great vessel precursor development.


Subject(s)
Blood Vessels/embryology , Gene Expression Regulation, Developmental , Heart/embryology , Transcription Factors/genetics , Zebrafish Proteins/genetics , Zebrafish/embryology , Animals , Homeobox Protein Nkx-2.5
4.
Development ; 140(6): 1353-63, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23444361

ABSTRACT

Second heart field (SHF) progenitors perform essential functions during mammalian cardiogenesis. We recently identified a population of cardiac progenitor cells (CPCs) in zebrafish expressing latent TGFß-binding protein 3 (ltbp3) that exhibits several defining characteristics of the anterior SHF in mammals. However, ltbp3 transcripts are conspicuously absent in anterior lateral plate mesoderm (ALPM), where SHF progenitors are specified in higher vertebrates. Instead, ltbp3 expression initiates at the arterial pole of the developing heart tube. Because the mechanisms of cardiac development are conserved evolutionarily, we hypothesized that zebrafish SHF specification also occurs in the ALPM. To test this hypothesis, we Cre/loxP lineage traced gata4(+) and nkx2.5(+) ALPM populations predicted to contain SHF progenitors, based on evolutionary conservation of ALPM patterning. Traced cells were identified in SHF-derived distal ventricular myocardium and in three lineages in the outflow tract (OFT). We confirmed the extent of contributions made by ALPM nkx2.5(+) cells using Kaede photoconversion. Taken together, these data demonstrate that, as in higher vertebrates, zebrafish SHF progenitors are specified within the ALPM and express nkx2.5. Furthermore, we tested the hypothesis that Nkx2.5 plays a conserved and essential role during zebrafish SHF development. Embryos injected with an nkx2.5 morpholino exhibited SHF phenotypes caused by compromised progenitor cell proliferation. Co-injecting low doses of nkx2.5 and ltbp3 morpholinos revealed a genetic interaction between these factors. Taken together, our data highlight two conserved features of zebrafish SHF development, reveal a novel genetic relationship between nkx2.5 and ltbp3, and underscore the utility of this model organism for deciphering SHF biology.


Subject(s)
Cell Differentiation , Heart Ventricles/embryology , Mesoderm/embryology , Stem Cells/physiology , Transcription Factors/physiology , Zebrafish Proteins/physiology , Zebrafish/embryology , Animals , Animals, Genetically Modified , Body Patterning/genetics , Body Patterning/physiology , Cell Differentiation/genetics , Cell Lineage/genetics , Cell Lineage/physiology , Embryo, Nonmammalian , Epistasis, Genetic/physiology , Gene Expression Regulation, Developmental/physiology , Heart/embryology , Heart/physiology , Heart Ventricles/metabolism , Homeobox Protein Nkx-2.5 , Latent TGF-beta Binding Proteins/genetics , Latent TGF-beta Binding Proteins/metabolism , Latent TGF-beta Binding Proteins/physiology , Mesoderm/metabolism , Mesoderm/physiology , Organ Specificity/genetics , Stem Cells/metabolism , Transcription Factors/genetics , Transcription Factors/metabolism , Zebrafish/genetics , Zebrafish/metabolism , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism
5.
Dev Dyn ; 242(5): 550-9, 2013 May.
Article in English | MEDLINE | ID: mdl-23335360

ABSTRACT

BACKGROUND: The mammalian outflow tract (OFT) and primitive right ventricle arise by accretion of newly differentiated cells to the arterial pole of the heart tube from multi-potent progenitor cells of the second heart field (SHF). While mounting evidence suggests that the genetic pathways regulating SHF development are highly conserved in zebrafish, this topic remains an active area of investigation. RESULTS: Here, we extend previous observations demonstrating that zebrafish tbx1 (van gogh, vgo) mutants show ventricular and OFT defects consistent with a conserved role in SHF-mediated cardiogenesis. Surprisingly, we reveal through double in situ analyses that tbx1 transcripts are excluded from cardiac progenitor cells and differentiated cardiomyocytes, suggesting a non-autonomous role in SHF development. Further, we find that the diminutive ventricle in vgo animals results from a 25% decrease in cardiomyocyte number that occurs subsequent to heart tube stages. Lastly, we report that although SHF progenitors are specified in the absence of Tbx1, they fail to be maintained due to compromised SHF progenitor cell proliferation. CONCLUSIONS: These studies highlight conservation of Tbx1 function in zebrafish SHF biology.


Subject(s)
Cell Proliferation , Heart/embryology , T-Box Domain Proteins/physiology , Zebrafish , Animals , Animals, Genetically Modified , Cell Differentiation/genetics , Embryo, Nonmammalian , Gene Expression Regulation, Developmental , Heart/physiology , Heart Ventricles/cytology , Heart Ventricles/embryology , Myocytes, Cardiac/cytology , Myocytes, Cardiac/metabolism , Myocytes, Cardiac/physiology , Stem Cells/metabolism , Stem Cells/physiology , T-Box Domain Proteins/genetics , T-Box Domain Proteins/metabolism , Zebrafish/embryology , Zebrafish/genetics , Zebrafish/metabolism , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism , Zebrafish Proteins/physiology
6.
Nat Cell Biol ; 14(6): 593-603, 2012 May 13.
Article in English | MEDLINE | ID: mdl-22581055

ABSTRACT

Cdt1, a protein critical for replication origin licensing in G1 phase, is degraded during S phase but re-accumulates in G2 phase. We now demonstrate that human Cdt1 has a separable essential mitotic function. Cdt1 localizes to kinetochores during mitosis through interaction with the Hec1 component of the Ndc80 complex. G2-specific depletion of Cdt1 arrests cells in late prometaphase owing to abnormally unstable kinetochore-microtubule (kMT) attachments and Mad1-dependent spindle-assembly-checkpoint activity. Cdt1 binds a unique loop extending from the rod domain of Hec1 that we show is also required for kMT attachment. Mutation of the loop domain prevents Cdt1 kinetochore localization and arrests cells in prometaphase. Super-resolution fluorescence microscopy indicates that Cdt1 binding to the Hec1 loop domain promotes a microtubule-dependent conformational change in the Ndc80 complex in vivo. These results support the conclusion that Cdt1 binding to Hec1 is essential for an extended Ndc80 configuration and stable kMT attachment.


Subject(s)
Cell Cycle Proteins/metabolism , Kinetochores/metabolism , Microtubules/metabolism , Nuclear Proteins/metabolism , Amino Acid Sequence , Cell Cycle Checkpoints , Cell Cycle Proteins/genetics , Cytoskeletal Proteins , HeLa Cells , Humans , Kinetochores/chemistry , Microtubules/chemistry , Mitosis , Molecular Sequence Data , Nuclear Proteins/chemistry , Nuclear Proteins/genetics
7.
Nature ; 474(7353): 645-8, 2011 May 29.
Article in English | MEDLINE | ID: mdl-21623370

ABSTRACT

The four-chambered mammalian heart develops from two fields of cardiac progenitor cells distinguished by their spatiotemporal patterns of differentiation and contributions to the definitive heart. The first heart field differentiates earlier in lateral plate mesoderm, generates the linear heart tube and ultimately gives rise to the left ventricle. The second heart field (SHF) differentiates later in pharyngeal mesoderm, elongates the heart tube, and gives rise to the outflow tract and much of the right ventricle. Because hearts in lower vertebrates contain a rudimentary outflow tract but not a right ventricle, the existence and function of SHF-like cells in these species has remained a topic of speculation. Here we provide direct evidence from Cre/Lox-mediated lineage tracing and loss-of-function studies in zebrafish, a lower vertebrate with a single ventricle, that latent TGF-ß binding protein 3 (ltbp3) transcripts mark a field of cardiac progenitor cells with defining characteristics of the anterior SHF in mammals. Specifically, ltbp3(+) cells differentiate in pharyngeal mesoderm after formation of the heart tube, elongate the heart tube at the outflow pole, and give rise to three cardiovascular lineages in the outflow tract and myocardium in the distal ventricle. In addition to expressing Ltbp3, a protein that regulates the bioavailability of TGF-ß ligands, zebrafish SHF cells co-express nkx2.5, an evolutionarily conserved marker of cardiac progenitor cells in both fields. Embryos devoid of ltbp3 lack the same cardiac structures derived from ltbp3(+) cells due to compromised progenitor proliferation. Furthermore, small-molecule inhibition of TGF-ß signalling phenocopies the ltbp3-morphant phenotype whereas expression of a constitutively active TGF-ß type I receptor rescues it. Taken together, our findings uncover a requirement for ltbp3-TGF-ß signalling during zebrafish SHF development, a process that serves to enlarge the single ventricular chamber in this species.


Subject(s)
Heart/embryology , Latent TGF-beta Binding Proteins/metabolism , Myocardium/metabolism , Zebrafish/embryology , Animals , Cardiovascular Abnormalities/embryology , Cell Lineage , Gene Knockdown Techniques , Homeobox Protein Nkx-2.5 , Molecular Sequence Data , Myocardium/cytology , Phenotype , Signal Transduction , Transcription Factors/metabolism , Zebrafish/genetics , Zebrafish Proteins/metabolism
8.
Blood ; 116(16): 3108-17, 2010 Oct 21.
Article in English | MEDLINE | ID: mdl-20664058

ABSTRACT

Regulated vascular endothelial growth factor (VEGF) signaling is required for proper angiogenesis, and excess VEGF signaling results in aberrantly formed vessels that do not function properly. Tumor endothelial cells have excess centrosomes and are aneuploid, properties that probably contribute to the morphologic and functional abnormalities of tumor vessels. We hypothesized that endothelial cell centrosome number is regulated by signaling via angiogenic factors, such as VEGF. We found that endothelial cells in developing vessels exposed to elevated VEGF signaling display centrosome overduplication. Signaling from VEGF, through either MEK/ERK or AKT to cyclin E/Cdk2, is amplified in association with centrosome overduplication, and blockade of relevant pathway components rescued the centrosome overduplication defect. Endothelial cells exposed to elevated FGF also had excess centrosomes, suggesting that multiple angiogenic factors regulate centrosome number. Endothelial cells with excess centrosomes survived and formed aberrant spindles at mitosis. Developing vessels exposed to elevated VEGF signaling also exhibited increased aneuploidy of endothelial cells, which is associated with cellular dysfunction. These results provide the first link between VEGF signaling and regulation of the centrosome duplication cycle, and suggest that endothelial cell centrosome overduplication contributes to aberrant angiogenesis in developing vessel networks exposed to excess angiogenic factors.


Subject(s)
Angiogenesis Inducing Agents/metabolism , Blood Vessels/growth & development , Centrosome/metabolism , Endothelial Cells/metabolism , Signal Transduction , Vascular Endothelial Growth Factor A/metabolism , Aneuploidy , Animals , Blood Vessels/metabolism , Cell Line , Cell Proliferation , Cells, Cultured , Cyclin E/metabolism , Cyclin-Dependent Kinase 2/metabolism , Endothelial Cells/cytology , Humans , Mice , Mitogen-Activated Protein Kinase Kinases/metabolism , Proto-Oncogene Proteins c-akt/metabolism , Yolk Sac/cytology
9.
Development ; 137(11): 1887-96, 2010 Jun.
Article in English | MEDLINE | ID: mdl-20460367

ABSTRACT

Discovering the genetic and cellular mechanisms that drive cardiac morphogenesis remains a fundamental goal, as three-dimensional architecture greatly impacts functional capacity. During development, accurately contoured chambers balloon from a primitive tube in a process characterized by regional changes in myocardial cell size and shape. How these localized changes are achieved remains elusive. Here, we show in zebrafish that microRNA-143 (miR-143) is required for chamber morphogenesis through direct repression of adducin3 (add3), which encodes an F-actin capping protein. Knockdown of miR-143 or disruption of the miR-143-add3 interaction inhibits ventricular cardiomyocyte F-actin remodeling, which blocks their normal growth and elongation and leads to ventricular collapse and decreased contractility. Using mosaic analyses, we find that miR-143 and add3 act cell-autonomously to control F-actin dynamics and cell morphology. As proper chamber emergence relies on precise control of cytoskeletal polymerization, Add3 represents an attractive target to be fine-tuned by both uniform signals, such as miR-143, and undiscovered localized signals. Together, our data uncover the miR-143-add3 genetic pathway as essential for cardiac chamber formation and function through active adjustment of myocardial cell morphology.


Subject(s)
Calmodulin-Binding Proteins/genetics , Heart/embryology , MicroRNAs/genetics , Zebrafish Proteins/genetics , Zebrafish/embryology , Zebrafish/genetics , 3' Untranslated Regions , Actins/metabolism , Animals , Base Sequence , Calmodulin-Binding Proteins/physiology , Gene Expression Regulation, Developmental , In Situ Hybridization , Myocytes, Cardiac/cytology , Myocytes, Cardiac/physiology , Oligodeoxyribonucleotides, Antisense/genetics , Sequence Homology, Nucleic Acid , Zebrafish/physiology , Zebrafish Proteins/physiology
10.
Cell Cycle ; 8(12): 1952-63, 2009 Jun 15.
Article in English | MEDLINE | ID: mdl-19440053

ABSTRACT

Origins of DNA replication are licensed through the assembly of a chromatin-bound prereplication complex. Multiple regulatory mechanisms block new prereplication complex assembly after the G(1)/S transition to prevent rereplication. The strict inhibition of licensing after the G(1)/S transition means that all origins used in S phase must have been licensed in the preceding G(1). Nevertheless mechanisms that coordinate S phase entry with the completion of origin licensing are still poorly understood. We demonstrate that depletion of either of two essential licensing factors, Cdc6 or Cdt1, in normal human fibroblasts induces a G(1) arrest accompanied by inhibition of cyclin E/Cdk2 activity and hypophosphorylation of Rb. The Cdk2 inhibition is attributed to a reduction in the essential activating phosphorylation of T160 and an associated delay in Cdk2 nuclear accumulation. In contrast, licensing inhibition in the HeLa or U2OS cancer cell lines failed to regulate Cdk2 or Rb phosphorylation, and these cells died by apoptosis. Co-depletion of Cdc6 and p53 in normal cells restored Cdk2 activation and Rb phosphorylation, permitting them to enter S phase with a reduced rate of replication and also to accumulate markers of DNA damage. These results demonstrate dependence on origin licensing for multiple events required for G(1) progression, and suggest a mechanism to prevent premature S phase entry that functions in normal cells but not in p53-deficient cells.


Subject(s)
Cell Cycle Proteins/metabolism , Cyclin-Dependent Kinase 2/metabolism , DNA Replication , Nuclear Proteins/metabolism , Origin Recognition Complex/metabolism , Replication Origin , Tumor Suppressor Protein p53/metabolism , Cell Cycle Proteins/genetics , Cell Line, Tumor , Fibroblasts/metabolism , G1 Phase/physiology , HeLa Cells , Humans , Nuclear Proteins/genetics , Origin Recognition Complex/genetics , Phosphorylation , Retinoblastoma Protein/metabolism , S Phase/physiology , Tumor Suppressor Protein p53/genetics
11.
Cell Cycle ; 8(1): 125-36, 2009 Jan 01.
Article in English | MEDLINE | ID: mdl-19106611

ABSTRACT

Defects in DNA replication are implicated as early and causal events in malignancy. However, the immediate effects of impaired DNA replication licensing on cell cycle progression of non-malignant human cells are unknown. Therefore, we have investigated the acute effects of Mcm7 ablation using synchronized cultures of untransformed Human Dermal Fibroblasts (HDF). Mcm7 ablation elicited a G(1) delay associated with impaired activation of CDK4 and CDK2 and reduced Rb phosphorylation. The cell cycle delay of Mcm7-ablated cells was not associated with a DNA damage response. However, levels of cyclin D1 mRNA were specifically reduced and binding of RNA Polymerase II to the CYCD1 promoter was decreased in Mcm7-depleted cells. Similar to Mcm7-deficiency, Mcm2- or Cdc6-depletion led to impaired cyclin D expression. Ectopic overexpression of Cdc6 in quiescent cells promoted cyclin D1 expression, CDK4 activation and G(1) progression. Therefore timely and efficient expression of cyclin D1 during G(1) phase requires replication licensing. Reconstitution of cyclin D1 expression was insufficient to correct the G(1) delay of Mcm7-depleted cells, indicating that additional cell cycle events during G(1) are dependent on replication licensing. However, ectopic expression of the HPV-E7 oncoprotein, and the resulting bypass of the requirement for cyclin D1-Rb signaling enabled Mcm7-depleted cells to enter S-phase. HPV-E7-induced S-phase entry of Mcm7-depleted cells led to a DNA damage response, a hallmark of pre-malignancy. Taken together, our results suggest the existence of a 'replication licensing restriction point' that couples pre-RC assembly with G(1) progression in normal cells to minimize replication stress, DNA damage and tumorigenesis.


Subject(s)
Cyclin D1/metabolism , DNA Replication , Fibroblasts/cytology , Fibroblasts/metabolism , G1 Phase , Cell Cycle Proteins/metabolism , Cells, Cultured , Cyclin-Dependent Kinase Inhibitor p27/metabolism , DNA Damage , DNA-Binding Proteins/deficiency , DNA-Binding Proteins/metabolism , Dermis/cytology , Down-Regulation , Humans , Minichromosome Maintenance Complex Component 7 , Models, Biological , Nuclear Proteins/deficiency , Nuclear Proteins/metabolism , Papillomavirus E7 Proteins/metabolism , Retinoblastoma Protein/metabolism , S Phase
12.
Biochemistry ; 47(13): 4141-50, 2008 Apr 01.
Article in English | MEDLINE | ID: mdl-18321066

ABSTRACT

This study investigated the requirement for ubiquitylation of PCNA at lysine 164 during polymerase eta-dependent translesion synthesis (TLS) of site-specific cis-syn cyclobutane thymine dimers (T (wedge)T). The in vitro assay recapitulated origin-dependent initiation, fork assembly, and semiconservative, bidirectional replication of double-stranded circular DNA substrates. A phosphocellulose column was used to fractionate HeLa cell extracts into two fractions; flow-through column fraction I (CFI) contained endogenous PCNA, RPA, ubiquitin-activating enzyme E1, and ubiquitin conjugase Rad6, and eluted column fraction II (CFII) included pol delta, pol eta, and RFC. CFII supplemented with purified recombinant RPA and PCNA (wild type or K164R, in which lysine was replaced with arginine) was competent for DNA replication and TLS. K164R-PCNA complemented CFII for these activities to the same extent and efficiency as wild-type PCNA. CFII mixed with CFI (endogenous PCNA, E1, Rad6) exhibited enhanced DNA replication activity, but the same TLS efficiency determined with the purified proteins. These results demonstrate that PCNA ubiquitylation at K164 of PCNA is not required in vitro for pol eta to gain access to replication complexes at forks stalled by T (wedge)T and to catalyze TLS across this dimer.


Subject(s)
DNA-Directed DNA Polymerase/metabolism , Proliferating Cell Nuclear Antigen/metabolism , Ubiquitin/metabolism , Base Sequence , DNA Primers , DNA Replication , Dimerization , Electrophoresis, Agar Gel/methods , HeLa Cells , Humans , Thymidine/metabolism
13.
J Invest Dermatol ; 128(1): 175-87, 2008 Jan.
Article in English | MEDLINE | ID: mdl-17597816

ABSTRACT

Defects in DNA damage responses may underlie genetic instability and malignant progression in melanoma. Cultures of normal human melanocytes (NHMs) and melanoma lines were analyzed to determine whether global patterns of gene expression could predict the efficacy of DNA damage cell cycle checkpoints that arrest growth and suppress genetic instability. NHMs displayed effective G1 and G2 checkpoint responses to ionizing radiation-induced DNA damage. A majority of melanoma cell lines (11/16) displayed significant quantitative defects in one or both checkpoints. Melanomas with B-RAF mutations as a class displayed a significant defect in DNA damage G2 checkpoint function. In contrast the epithelial-like subtype of melanomas with wild-type N-RAS and B-RAF alleles displayed an effective G2 checkpoint but a significant defect in G1 checkpoint function. RNA expression profiling revealed that melanoma lines with defects in the DNA damage G1 checkpoint displayed reduced expression of p53 transcriptional targets, such as CDKN1A and DDB2, and enhanced expression of proliferation-associated genes, such as CDC7 and GEMININ. A Bayesian analysis tool was more accurate than significance analysis of microarrays for predicting checkpoint function using a leave-one-out method. The results suggest that defects in DNA damage checkpoints may be recognized in melanomas through analysis of gene expression.


Subject(s)
DNA Damage , G1 Phase/physiology , G2 Phase/physiology , Gene Expression Profiling , Melanoma/pathology , Cell Cycle Proteins/genetics , Cell Line, Tumor , Cells, Cultured , Chromosomal Instability , Cyclin-Dependent Kinase Inhibitor p21/genetics , DNA Breaks, Double-Stranded , DNA-Binding Proteins/genetics , Geminin , Humans , Melanocytes/cytology , Melanoma/genetics , Melanoma/metabolism , Mutation , Phosphorylation , Protein Serine-Threonine Kinases/genetics , Proto-Oncogene Proteins B-raf/genetics , Tumor Suppressor Protein p53/physiology
14.
Mol Biol Cell ; 18(9): 3340-50, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17567951

ABSTRACT

The Cdc6 protein is an essential component of pre-replication complexes (preRCs), which assemble at origins of DNA replication during the G1 phase of the cell cycle. Previous studies have demonstrated that, in response to ionizing radiation, Cdc6 is ubiquitinated by the anaphase promoting complex (APC(Cdh1)) in a p53-dependent manner. We find, however, that DNA damage caused by UV irradiation or DNA alkylation by methyl methane sulfonate (MMS) induces Cdc6 degradation independently of p53. We further demonstrate that Cdc6 degradation after these forms of DNA damage is also independent of cell cycle phase, Cdc6 phosphorylation of the known Cdk target residues, or the Cul4/DDB1 and APC(Cdh1) ubiquitin E3 ligases. Instead Cdc6 directly binds a HECT-family ubiquitin E3 ligase, Huwe1 (also known as Mule, UreB1, ARF-BP1, Lasu1, and HectH9), and Huwe1 polyubiquitinates Cdc6 in vitro. Degradation of Cdc6 in UV-irradiated cells or in cells treated with MMS requires Huwe1 and is associated with release of Cdc6 from chromatin. Furthermore, yeast cells lacking the Huwe1 ortholog, Tom1, have a similar defect in Cdc6 degradation. Together, these findings demonstrate an important and conserved role for Huwe1 in regulating Cdc6 abundance after DNA damage.


Subject(s)
Cell Cycle Proteins/metabolism , DNA Damage , Nuclear Proteins/metabolism , Ubiquitin-Protein Ligases/metabolism , Anaphase-Promoting Complex-Cyclosome , Catalysis , Cell Cycle , Cyclin-Dependent Kinases/metabolism , HeLa Cells , Humans , Phosphorylation , Polyubiquitin/metabolism , Protein Binding , Protein Processing, Post-Translational , Tumor Suppressor Proteins , Ubiquitin-Protein Ligase Complexes/metabolism , Ubiquitin-Protein Ligases/chemistry
15.
Cell Cycle ; 5(18): 2160-7, 2006 Sep.
Article in English | MEDLINE | ID: mdl-16969085

ABSTRACT

At any moment during S phase, regions of genomic DNA are in various stages of replication (i.e., initiation, chain elongation, and termination). These stages may be differentially inhibited after treatment with various carcinogens that damage DNA such as UV. We used visualization of active replication units in combed DNA fibers, in combination with quantitative analyses of the size distributions of nascent DNA, to evaluate the role of S-checkpoint proteins in UV-induced inhibition of DNA replication. When HeLa cells were exposed to a low fluence (1 J/m(2)) of 254 nm UV light (UVC), new initiation events were severely inhibited (5-6-fold reduction). A larger fluence of UVC (10 J/m(2)) resulted in stronger inhibition of the overall rate of DNA synthesis without decreasing further the frequency of replicon initiation events. Incubation of HeLa cells with caffeine and knockdown of ATR or Chk1 kinases reversed the UVC-induced inhibition of initiation of new replicons. These findings illustrate the concordance of data derived from different experimental approaches, thus strengthening the evidence that the activation of the intra-S checkpoint by UVC is dependent on the ATR and Chk1 kinases.


Subject(s)
DNA Damage/genetics , DNA Replication/genetics , Epithelial Cells/metabolism , Genes, cdc/physiology , S Phase/genetics , Ultraviolet Rays , Ataxia Telangiectasia Mutated Proteins , Caffeine/pharmacology , Cell Cycle Proteins/genetics , Checkpoint Kinase 1 , DNA/biosynthesis , DNA/genetics , DNA/radiation effects , DNA Damage/radiation effects , DNA Replication/radiation effects , Dose-Response Relationship, Radiation , Down-Regulation/genetics , Epithelial Cells/radiation effects , Genes, cdc/radiation effects , HeLa Cells , Humans , Protein Kinases/genetics , Protein Serine-Threonine Kinases/genetics , S Phase/radiation effects
16.
J Vet Diagn Invest ; 16(2): 145-9, 2004 Mar.
Article in English | MEDLINE | ID: mdl-15053366

ABSTRACT

On June 25, 2002, aquarium veterinarians treated a 5-year-old, male little blue penguin (Eudyptula minor) that was acutely recumbent and dull, with inappetence of 24-hour duration. The penguin died within 10 minutes of presentation despite emergency resuscitation efforts. Gross pathologic findings consisted of pulmonary congestion and intestinal hemorrhage. Histopathologic findings included necrosis of tips of intestinal villi, increased numbers of mononuclear cells in pulmonary interstitium and hepatic sinusoids, and gram-positive bacteria in systemic microvasculature. Transmission electron microscopic examination revealed short gram-positive bacilli located in lumina of glomerular capillaries and in cytoplasm of mononuclear phagocytic cells in the lung and liver. Erysipelothrix rhusiopathiae was recovered from the lung, liver, and intestine by bacteriologic culture. Amplicons from polymerase chain reaction (PCR) tests using Erysipelothrix genus-specific primers and total genomic DNA extracted from formalin-fixed, paraffin-embedded tissue sections of lung and intestine demonstrated 99% nucleotide sequence identity with 16S small-subunit ribosomal DNA of E. rhusiopathiae and E. tonsillarum. The source of infection was speculated to be fish in the diet; however, repeated attempts to detect Erysipelothrix spp. from the mucous layer of food fish using bacteriologic culture and PCR were unsuccessful. This is the first report of erysipelas in a captive aquatic bird. Details of the isolation of E. rhusiopathiae and the application of molecular testing to identify Erysipelothrix DNA in formalin-fixed, paraffin-embedded tissue sections are given.


Subject(s)
Bacteremia/veterinary , Bird Diseases/microbiology , Erysipelothrix Infections/microbiology , Erysipelothrix/growth & development , Animals , Bacteremia/microbiology , Bacteremia/pathology , Bird Diseases/pathology , Birds , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Erysipelothrix/genetics , Erysipelothrix Infections/pathology , Fatal Outcome , Intestines/microbiology , Intestines/pathology , Lung/microbiology , Lung/pathology , Male , Microscopy, Electron/veterinary , Polymerase Chain Reaction/veterinary , RNA, Ribosomal, 16S/chemistry , RNA, Ribosomal, 16S/genetics
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