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1.
Life (Basel) ; 14(5)2024 Apr 26.
Article in English | MEDLINE | ID: mdl-38792585

ABSTRACT

A novel aerotolerant anaerobic bacterium (strain M4AhT) was isolated from a terrestrial mud volcano (Taman Peninsula, Russia). Cells were small, cell-wall-less, non-motile cocci, 0.32-0.65 µm in diameter. The isolate was a mesophilic, neutrophilic chemoorganoheterotroph, growing on carbohydrates (D-glucose, D-trehalose, D-ribose, D-mannose, D-xylose, D-maltose, D-lactose, D-cellobiose, D-galactose, D-fructose, and D-sucrose), proteinaceous compounds (yeast extract, tryptone), and pyruvate. Strain M4AhT tolerated 2% oxygen in the gas phase, was catalase-positive, and showed sustainable growth under microaerobic conditions. The dominant cellular fatty acids of strain M4AhT were C16:0 and C18:0. The G+C content of the genomic DNA was 32.42%. The closest phylogenetic relative of strain M4AhT was Mariniplasma anaerobium from the family Acholeplasmataceae (order Acholeplasmatales, class Mollicutes). Based on the polyphasic characterization of the isolate, strain M4AhT is considered to represent a novel species of a new genus, for which the name Peloplasma aerotolerans gen. nov., sp. nov. is proposed. The type strain of Peloplasma aerotolerans is M4AhT (=DSM 112561T = VKM B-3485T = UQM 41475T). This is the first representative of the order Acholeplasmatales, isolated from a mud volcano.

2.
Syst Appl Microbiol ; 46(4): 126438, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37263084

ABSTRACT

A novel facultatively anaerobic moderately thermophilic bacterium, strain B-154 T, was isolated from a terrestrial hot spring in the Baikal lake region (Russian Federation). Gram-negative, motile, spherical cells were present singly, in pairs, or aggregates, and reproduced by binary fission. The strain grew at 30-57 °C and within a pH range of 5.1-8.4 with the optimum at 50 °C and pH 6.8-7.1. Strain B-154 T was a chemoorganoheterotroph, growing on mono-, di- and polysaccharides (xylan, starch, galactan, galactomannan, glucomannan, xyloglucan, pullulan, arabinan, lichenan, beta-glucan, pachyman, locust bean gum, xanthan gum). It did not require sodium chloride or yeast extract for growth. Major cellular fatty acids were anteiso-C15:0, iso-C16:0 and iso-C14:0. The respiratory quinone was MK-7. The complete genome of strain B-154 T was 4.73 Mbp in size; its G + C content was 61%. According to the phylogenomic analysis strain B-154 T forms a separate family-level phylogenetic lineage. Moreover, together with Limisphaera ngatamarikiensis and "Pedosphaera parvula" this strain forms a separate order-level phylogenetic lineage within Verrucomicrobiae class. Hence, we propose a novel order, Limisphaerales ord. nov., with two families Limisphaeraceae fam. nov. and Fontisphaeraceae fam. nov., and a novel genus and species Fontisphaera persica gen. nov., sp. nov. with type strain B-154 T. Ecogenomic analysis showed that representatives of the Limisphaerales are widespread in various environments. Although some of them were detected in hot springs the majority of Limisphaerales (54% of the studied metagenome-assembled genomes) were found in marine habitats. This study allowed a better understanding of physiology and ecology of Verrucomicrobiota - a rather understudied bacterial phylum.


Subject(s)
Hot Springs , Humans , Hot Springs/microbiology , Phylogeny , Lakes/microbiology , RNA, Ribosomal, 16S/genetics , Fatty Acids/chemistry , Bacteria, Anaerobic , DNA, Bacterial/genetics , Sequence Analysis, DNA , Bacterial Typing Techniques
3.
Front Microbiol ; 14: 1185739, 2023.
Article in English | MEDLINE | ID: mdl-37250036

ABSTRACT

One of the important current issues of bioenergetics is the establishment of the thermodynamic limits of life. There is still no final understanding of what is the minimum value of the energy yield of a reaction that is sufficient to be used by an organism (the so-called "biological quantum of energy"). A reasonable model for determination of the minimal energy yield would be microorganisms capable of living on low-energy substrates, such as acetogenic prokaryotes. The most prominent metabolic feature of acetogens is autotrophic growth with molecular hydrogen and carbon dioxide as the substrates, which is hardly competitive in environments. Most probably, that is why only facultative autotrophic acetogens have been known so far. Here, we describe the first obligately autotrophic acetogenic bacterium Aceticella autotrophica gen. nov., sp. nov., strain 3443-3AcT. Phylogenetically, the new genus falls into a monophyletic group of heterotrophic bacteria of the genera Thermoanaerobacterium, Thermoanaerobacter, and Caldanaerobacter (hereinafter referred to as TTC group), where the sole acetogenic representative has so far been the facultatively autotrophic Thermoanaerobacter kivui. A. autotrophica and T. kivui both are acetogens employing energy-converting hydrogenase (Ech-acetogens) that are likely to have inherited the acetogenesis capacity vertically from common ancestor. However, their acetogenic machineries have undergone different adjustments by gene replacements due to horizontal gene transfers from different donors. Obligate autotrophy of A. autotrophica is associated with the lack of many sugar transport systems and carbohydrate catabolism enzymes that are present in other TTC group representatives, including T. kivui.

4.
Adv Mater ; 35(31): e2300403, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37161663

ABSTRACT

Electron transport layers (ETLs) with pronounced electron conducting capability are essential for high performance planar perovskite photovoltaics, with the great challenge being that the most widely used metal oxide ETLs unfortunately have intrinsically low carrier mobility. Herein is demonstrated that by simply addressing the carrier loss at particle boundaries of TiO2 ETLs, through embedding in ETL p-n heterointerfaces, the electron mobility of the ETLs can be boosted by three orders of magnitude. Such embedding is encouragingly favorable for both inhibiting the formation of rutile phase TiO2 in ETL, and initiating the growth of high-quality perovskite films with less defect states. By virtue of these merits, creation of formamidinium lead iodide perovskite solar cells (PSCs) with a champion efficiency of 25.05% is achieved, setting a new benchmark for planar PSCs employing TiO2 ETLs. Unencapsulated PSCs deliver much-improved environmental stability, i.e., more than 80% of their initial efficiency after 9000 h of air storage under RH of 40%, and over 90% of their initial efficiency at maximum power point under continuous illumination for 500 h. Further work exploring other p-type nanocrystals for embedding warrants the proposed strategy as a universal alternative for addressing the low-carrier mobility of metal oxide based ETLs.

5.
Syst Appl Microbiol ; 45(6): 126375, 2022 Nov.
Article in English | MEDLINE | ID: mdl-36356531

ABSTRACT

A novel facultatively anaerobic moderately thermophilic bacterium, strain B-254T, was isolated from a terrestrial hot spring near the town of Goryachinsk in the Baikal lake region (Russian Federation). Motile spherical cells of the strain were present as single cocci, in pairs, or aggregates. The cells had a Gram negative cell wall and reproduced by binary fission. The isolate grew at 30-57 °C (opt. 50-54 °C) and at pH 5.1-8.4 (opt. 6.6-7.1). Strain B-254T was a chemoorganoheterotroph, growing on mono-, di- and polysaccharides (xylan, starch, galactan, galactomannan, xyloglucan, arabinan, curdlan, beta-glucan, locust bean gum, xanthan gum). Sodium chloride or yeast extract were not required for growth. Major cellular fatty acids were iso-C16:0, anteiso-C17:0, and C20:0; major polar lipid was phosphatidylethanolamine. The complete genome of strain B-254T was 5.54 Mb; its GC content was 64 %. According to the results of 16S rRNA gene sequence-based phylogenetic analysis and the conserved proteins sequences-based phylogenomic analysis strain B-254T was on a separate lineage within the order Tepidisphaerales (Phycisphaerae, Planctomycetes). Based on phylogenetic and phylogenomic analyses of Phycisphaerae, whole genome comparisons of Tepidisphaerales as well as distinctive phenotypic features of the strain, it was assigned to a novel genus and species for which the name Fontivita pretiosa gen. nov. sp. nov. is proposed. Strain B-254T = KCTC 82380T = VKM B-3507T.


Subject(s)
Hot Springs , Hot Springs/microbiology , RNA, Ribosomal, 16S/genetics , Lakes , Phylogeny , DNA, Bacterial/genetics , Bacterial Typing Techniques , Sequence Analysis, DNA , Bacteria, Anaerobic , Fatty Acids/analysis , Planctomycetes
6.
Front Microbiol ; 13: 1003942, 2022.
Article in English | MEDLINE | ID: mdl-36204611

ABSTRACT

The importance of the impact of human hormones on commensal microbiota and microbial biofilms is established in lots of studies. In the present investigation, we continued and extended the research of epinephrine effects on the skin commensal Micrococcus luteus C01 and its biofilms, and also the matrix changes during the biofilm growth. Epinephrine in concentration 4.9 × 10-9 M which is close to normal blood plasma level increased the amount of polysaccharides and extracellular DNA in the matrix, changed extensively its protein, lipid and polysaccharide composition. The Ef-Tu factor was one of the most abundant proteins in the matrix and its amount increased in the presence of the hormone. One of the glucose-mannose polysaccharide was absent in the matrix in presence of epinephrine after 24 h of incubation. The matrix phospholipids were also eradicated by the addition of the hormone. Hence, epinephrine has a great impact on the M. luteus biofilms and their matrix composition, and this fact opens wide perspectives for the future research.

7.
Adv Mater ; 34(19): e2201140, 2022 May.
Article in English | MEDLINE | ID: mdl-35244311

ABSTRACT

The semiconductor-liquid junction (SCLJ), the dominant place in photoelectrochemical (PEC) catalysis, determines the interfacial activity and stability of photoelectrodes, whcih directly affects the viability of PEC hydrogen generation. Though efforts dedicated in past decades, a challenge remains regarding creating a synchronously active and stable SCLJ, owing to the technical hurdles of simultaneously overlaying the two advantages. The present work demonstrates that creating an SCLJ with a unique configuration of the dual interfacial layers can yield BiVO4 photoanodes with synchronously boosted photoelectrochemical activity and operational stability, with values located at the top in the records of such photoelectrodes. The bespoke dual interfacial layers, accessed via grafting laser-generated carbon dots with phenolic hydroxyl groups (LGCDs-PHGs), are experimentally verified effective, not only in generating the uniform layer of LGCDs with covalent anchoring for inhibited photocorrosion, but also in activating, respectively, the charge separation and transfer in each layer for boosted charge-carrier kinetics, resulting in FeNiOOH-LGCDs-PHGs-MBVO photoanodes with a dual configuration with the photocurrent density of 6.08 mA cm-2 @ 1.23 VRHE , and operational stability up to 120 h @ 1.23 VRHE . Further work exploring LGCDs-PHGs from catecholic molecules warrants the proposed strategy as being a universal alternative for addressing the interfacial charge-carrier kinetics and operational stability of semiconductor photoelectrodes.

8.
ACS Omega ; 7(8): 6728-6736, 2022 Mar 01.
Article in English | MEDLINE | ID: mdl-35252668

ABSTRACT

The problem of microbial growth on various surfaces has increased concern in society in the context of antibiotic misuse and the spreading of hospital infections. Thus, the development of new, antibiotic-free antibacterial strategies is required to combat bacteria resistant to usual antibiotic treatments. This work reports a new method for producing an antibiotic-free antibacterial halloysite-based nanocomposite with silver nanoparticles and phosphomolybdic acid as biocides, which can be used as components of smart antimicrobial coatings. The composite was characterized by using energy-dispersive X-ray fluorescence spectroscopy and transmission electron microscopy. The release of phosphomolybdic acid from the nanocomposite was studied by using UV-vis spectroscopy. It was shown that the antibiotic-free nanocomposite consisting of halloysite nanotubes decorated with silver nanoparticles loaded with phosphomolybdic acid and treated with calcium chloride possesses broad antibacterial properties, including the complete growth inhibition of Staphylococcus aureus and Pseudomonas aeruginosa bacteria at a 0.5 g × L-1 concentration and Acinetobacter baumannii at a 0.25 g × L-1 concentration.

9.
Data Brief ; 39: 107532, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34805462

ABSTRACT

Two-phase samples containing water, 2-butoxyethanol, and toluene in the different mass ratios were gravimetrically prepared in the jacketed cells at T=293.15 K and p=0.100 MPa and equilibrated for 24 h. The samples were volumetrically titrated until homogeneous. Then new samples were prepared in the two-phase region with compositions in the immediate proximity to the expected separation boundary and titrated until homogeneous. The critical point was located, keeping the phase ratio of 1:1 during the titration. The density of homogeneous samples obtained during titration was measured using the density meter. These data were used to construct an interpolation of the density along the separation boundary. New two-phase samples were prepared; the interfacial tension, density, and viscosity were measured. Thus, interfacial tension isotherm and viscosity isotherm were obtained using density interpolation to determine the composition of the equilibrated phases. The obtained data can be used to prepare the two-phase samples with desired properties, design the oil-water separation processes, and develop new oil spill dispersants containing 2-butoxyethanol. This article is a co-submission with a paper [1].

10.
Syst Appl Microbiol ; 44(4): 126230, 2021 Jul.
Article in English | MEDLINE | ID: mdl-34293647

ABSTRACT

A novel hyperthermophilic crenarchaeon, strain 3507LTT, was isolated from a terrestrial hot spring near Tinguiririca volcano, Chile. Cells were non-motile thin, slightly curved filamentous rods. It grew at 73-93 °C and pH range of 5 to 7.5 with an optimum at 85 °C and pH 6.0-6.7. The presence of culture broth filtrate of another hyperthemophilic archaeon as well as yeast extract was obligatory for growth of the novel isolate. Strain 3507LTT is an anaerobic chemoorganoheterotroph, fermenting monosaccharides, disaccharides and polysaccharides (lichenan, starch, xanthan gum, xyloglucan, alpha-cellulose and amorphous cellulose). No growth stimulation was detected when nitrate, thiosulfate, selenate or elemental sulfur were added as the electron acceptors. The complete genome of strain 3507LTT consisted of a single circular chromosome with size of 1.63 Mbp. The DNA G+C content was 53.9%. According to the 16S rRNA gene sequence as well as conserved protein sequences phylogenetic analyses, strain 3507LTT together with Thermofilum uzonense formed a separate cluster within a Thermofilaceae family (Thermoproteales/Thermoprotei/Crenarchaeota). Based on phenotypic characteristics, phylogeny as well as AAI comparisons, a novel genus and species Infirmifilum lucidum strain 3507LTT (=VKM B-3376T = KCTC 15797T) gen. nov. sp. nov. was proposed. Its closest relative, Thermofilum uzonense strain 1807-2T should be reclassified as Infirmifilum uzonense strain 1807-2T comb. nov. Finally, based on phylogenomic and comparative genome analyses of representatives of Thermofilaceae family and other representatives of Thermoproteales order, a proposal of transfer of the family Thermofilaceae into a separate order Thermofilales ord. nov. was made.


Subject(s)
Hot Springs/microbiology , Phylogeny , Thermofilaceae , Bacterial Typing Techniques , Base Composition , Chile , DNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Thermofilaceae/classification , Thermofilaceae/isolation & purification
11.
Biochem Biophys Res Commun ; 546: 145-149, 2021 03 26.
Article in English | MEDLINE | ID: mdl-33582557

ABSTRACT

In times of widespread multiple antibiotic resistance, the bacterial colonization of crucial medical surfaces should be detected as fast as possible. In this work, we present the non-destructive SERS method for the detection of bacterial colonization. SERS is an excellent tool for the monitoring of suitable substances in low concentrations. The SERS substrate was prepared by the aggregation of citrate-stabilized gold nanoparticles and the adsorption of the reporters (crystal violet, thiamine, and adenine). We have tested the substrate for the detection of clinically relevant S. aureus and P. aeruginosa bacteria. The SERS spectra before and after the substrate incubation revealed the degradation of the reporter by the growing bacteria. The growth of P. aeruginosa was detected using the substrates with preadsorbed crystal violet or adenine. The suitable reporter for the detection of S. aureus remains to be discovered. The selection of the reporters resistant to exposure but easily degraded by bacteria will open the way for the in situ monitoring of bacterial colonization, thus complementing the arsenal of methods in the battle against hospital infections.


Subject(s)
Adenine/chemistry , Gentian Violet/chemistry , Pseudomonas aeruginosa/growth & development , Pseudomonas aeruginosa/isolation & purification , Spectrum Analysis, Raman/methods , Citric Acid/chemistry , Gold/chemistry , Metal Nanoparticles/analysis , Metal Nanoparticles/chemistry , Molecular Probes/analysis , Molecular Probes/chemistry , Staphylococcus aureus , Thiamine/chemistry
12.
Syst Appl Microbiol ; 44(1): 126157, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33220635

ABSTRACT

A novel aerobic moderately thermophilic bacterium, designated strain 2918T, was isolated from a terrestrial hot spring of Kamchatka, Russian Federation. Gram-negative, motile, spherical cells were present singly, in pairs, or aggregates, and reproduced by budding. The strain grew at 25-60°C and within a pH range of 5.0-8.0 with an optimum at 54-60°C and pH 7.5. Strain 2918T did not require sodium chloride or yeast extract for growth. It was a chemoorganoheterotroph, growing on mono-, di- and polysaccharides (starch, lichenan, galactan, arabinan, xanthan gum, beta-glucan). No growth was observed under anaerobic conditions neither in the presence of sulfur, nitrate, or thiosulfate nor without adding any electron acceptor. Major cellular fatty acids were C18:0 and C20:0. The respiratory quinone was MK-6. The size of the genome of strain 2918T was 4.81 Mb. Genomic DNA G+C content was 60.4mol%. According to the 16S rRNA gene sequence and conserved protein sequences phylogenies, strain 2918T represented a distinct lineage of the order Gemmatales within Planctomycetes. Based on phylogenetic analysis and phenotypic features, the novel isolate was assigned to a novel genus in the Gemmatales for which the name Thermogemmata gen. nov. is proposed. Strain 2918T (=KCTC 72012T =VKM B-3161T) represents its first species Thermogemmata fonticola sp. nov.


Subject(s)
Bacteria/classification , Hot Springs/microbiology , Phylogeny , Bacteria/isolation & purification , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , RNA, Ribosomal, 16S/genetics , Russia , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistry
13.
Syst Appl Microbiol ; 43(5): 126126, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32847792

ABSTRACT

A novel anaerobic moderately thermophilic bacterium, designated strain 38H-strT, was isolated from a 12m deep hot spring of the Kunashir Island shore. Gram-negative cells were non-spore-forming, motile, straight or curved filamentous rods, occasionally forming loops and knots. The strain grew at 20-65°C and pH range of 4.0-9.0 with an optimum at 50°C and pH 6.5-7.0. Strain 38H-strT required 0.5-2.5% NaCl (1.5% is an optimum) for growth. It was a chemoorganoheterotroph, growing on carbohydrates (starch, pullulan, alginate, laminarin, beta-glucan) or peptide mixtures and proteins (peptone, tryptone, gelatin, and α- or ß- keratins). Major products of glucose fermentation were acetate, hydrogen, and carbon dioxide. Major cellular fatty acids were iso- and anteiso-C15:0. Phosphatidylethanolamine, an unidentified phospholipid, and three unidentified polar lipids were detected in cellular lipids fractions. The quinone was MK-7. The size of complete genome of strain 38H-strT was 3.2 Mb; DNA G+C content was 38.3mol%. According to 16S rRNA gene sequence and conserved protein sequences phylogenies, strain 38H-strT represented a deeply branched lineage near the root of the class Bacteroidia. Based on phylogenetic analysis and phenotypic features the novel isolate was assigned to a novel family within the order Bacteroidales for which the name Tenuifilaceae fam. nov. is proposed. Strain 38H-strT (=DSM 100343T =VKM B-2964T) represents the first genus and species Tenuifilum thalassicum gen. nov., sp. nov.


Subject(s)
Bacteroidetes/classification , Bacteroidetes/isolation & purification , Hot Springs/microbiology , Anaerobiosis , Bacteroidetes/genetics , Bacteroidetes/physiology , Base Composition , Carbohydrate Metabolism , Carbohydrates , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Fatty Acids/analysis , Fermentation , Genes, Bacterial , Genes, rRNA , Genome, Bacterial , Hot Temperature , Lipids/analysis , Peptides/metabolism , Phenotype , Phylogeny , Proteins/metabolism , RNA, Ribosomal, 16S/genetics , Russia , Sequence Analysis, DNA
14.
ACS Nano ; 14(7): 8894-8901, 2020 Jul 28.
Article in English | MEDLINE | ID: mdl-32539347

ABSTRACT

Phase change materials (PCMs) store latent heat energy as they melt and release it upon freezing. However, they suffer from chemical instability and poor thermal conductivity, which can be improved by encapsulation. Here, we encapsulated a salt hydrate PCM (Mg(NO3)2·6H2O) within all-silica nanocapsules using a Pickering emulsion template. Electron microscopy analysis demonstrated robust silica-silica (RSS) shell formed inner silica layer of approximately 45 nm thickness, with silica Pickering emulsifiers anchored to the surface. The RSS nanostructured capsules are 300-1000 nm in size and have far superior thermal and chemical stability compared with that of the bulk salt hydrate. Differential scanning calorimetry showed encapsulated PCMs were stable over 500+ melt/freeze cycles (equivalent to 500+ day/night temperature difference) with a latent heat of 112.8 J·g-1. Thermogravimetric analysis displayed their impressive thermal stability, with as little as 37.2% mass loss at 800 °C. Raman spectroscopy proved the presence of salt hydrate within RSS capsules and illustrated the improved chemical stability compared to non-encapsulated Mg(NO3)2·6H2O. Energy capsule behavior compared with the bulk material was also observed at the macroscale with thermal imaging, showing that the melting/freezing behavior of the PCM is confined to the nanocapsule core. The thermal conductivity of the silica shell measured by laser flash thermal conductivity method is 1.4 ± 0.2 W·(m·K)-1, which is around 7 times more than the thermal conductivity of the polymer shell (0.2 W·(m·K)-1). RSS capsules containing PCMs have improved thermal stability and conductivity compared to polymer-based capsules and have good potential for thermoregulation or energy storage applications.

15.
Int J Syst Evol Microbiol ; 70(4): 2726-2731, 2020 Apr.
Article in English | MEDLINE | ID: mdl-32176605

ABSTRACT

A moderately thermophilic, neutrophilic, aerobic, Gram-negative bacterium, strain 3729kT, was isolated from a thermal spring of the Chukotka Peninsula, Arctic region, Russia. It grew chemoorganoheterotrophically, utilizing proteinaceous substrates, including highly rigid keratins as well as various polysaccharides (glucomannan, locust bean gum, gum guar and xanthan gum). The major fatty acids of strain 3729kT were iso-C15 : 0 (60.9%), iso-C17 : 0 (12.0%), C16 : 0 (9.9%) and iso-C16 : 0 (7.4%). Isoprenoid quinones were Q-8 (95%) and Q-9 (5%). The major polar lipids were phosphatidylglycerol, phosphatidylethanolamine, phosphatidylmethylethanolamine and three unidentified polar lipids. Strain 3729kT was inhibited by chloramphenicol, neomycin, novobiocin, kanamycin, tetracycline, ampicillin and polymyxin B, but resistant to rifampicin, vancomycin and streptomycin. At the same time, strain 3729kT inhibited growth of Micrococcus luteus and its genome possessed genes for antimicrobial activity against Gram-positive bacteria (a single putative bacteriocin and several secreted lysozymes and peptidoglycan lytic transglycosylases). The DNA G+C content was 69.8 mol%. 16S rRNA gene sequence-based phylogenetic analysis placed strain 3729kT into a distinct species/genus-level branch within the family Xanthomonadaceae (Proteobacteria). Phylogenetic analysis of 120 conservative protein sequences of all Xanthomonadaceae with validly published names and publicly available genomic sequences supported a species-level position of strain 3729kT within the genus Arenimonas. Pairwise ANI values between strain 3729kT and other Arenimonas species were of 75-80 %, supporting the proposal of a novel species. Accordingly, Arenimonas fontis sp. nov., with the type strain 3729kT (=VMK В-3232Т=DSM 105847T), was proposed.


Subject(s)
Hot Springs/microbiology , Phylogeny , Xanthomonadaceae/classification , Arctic Regions , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Russia , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistry , Xanthomonadaceae/isolation & purification
16.
Appl Spectrosc ; 74(12): 1496-1504, 2020 Dec.
Article in English | MEDLINE | ID: mdl-32162524

ABSTRACT

The low accessibility of natural gas fields and transporting pipelines requires portable online analyzers of the composition of natural gas, ensuring nearly chromatographic precision and capable of in situ analysis of a wide range of gases, including infrared-inactive ones (hydrogen, oxygen, nitrogen, chlorine). We have developed an express method of gas analysis meeting all the requirements for analysis of natural gas and its derivative mixtures using a portable 532 nm Raman spectrometer rigidly connected to a hollow-core crystal photonic fiber.

17.
Int J Syst Evol Microbiol ; 70(2): 1192-1202, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31769750

ABSTRACT

A novel aerobic moderately thermophilic bacterium, strain 3753OT, was isolated from a Chukotka hot spring (Arctic, Russia) using the newly developed technology of laser engineering of microbial systems. Сells were regular short rods, 0.4×0.8-2.0 µm in size, with a monoderm-type envelope and a single flagellum. The temperature and pH ranges for growth were 42-60 °C and pH 6.5-8.5, the optima being 50-54 °C and pH 7.3. Strain 3753OT grew chemoorganoheterotrophically on a number of carbohydrates or peptidic substrates and volatile fatty acids, and chemolithoautotrophically with siderite (FeCO3) as the electron donor. The major cellular fatty acid was branched C19 : 0. Phosphatidylethanolamine, phosphatidylglycerol and two unidentified phospholipids as well as two yellow carotenoid-type pigments were detected in the polar lipid extract. Strain 3753OT was inhibited by chloramphenicol, polymyxin B, vancomycin, streptomycin, neomycin and kanamycin, but resistant to the action of novobiocin and ampicillin. The DNA G+C content was 69.9 mol%. The 16S rRNA gene as well as 51 conservative protein sequence-based phylogenetic analyses placed strain 3753OT within the previously uncultivated lineage OLB14 in the phylum Chloroflexi. Taking into account the phylogenetic position as well as phenotypic properties of the novel isolate, the novel genus and species Tepidiforma bonchosmolovskayae gen. nov., sp. nov., within the Tepidiformaceae fam. nov., the Tepidiformales ord. nov. and the Tepidiformia classis nov. are proposed. The type strain of Tepidiforma bonchosmolovskayae is 3753OT (=VKM B-3389T=KTCT 72284T).


Subject(s)
Chloroflexi/classification , Hot Springs/microbiology , Phylogeny , Arctic Regions , Bacterial Typing Techniques , Base Composition , Carotenoids/chemistry , DNA, Bacterial/genetics , Fatty Acids/chemistry , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Russia , Sequence Analysis, DNA
18.
Langmuir ; 35(41): 13480-13487, 2019 Oct 15.
Article in English | MEDLINE | ID: mdl-31545051

ABSTRACT

Nonionic hydrotropes (low-molecular-weight amphiphiles) demonstrate striking dual actions in bulk solutions and interfaces, exhibiting both surfactant-like and co-solvent properties. We report on peculiar, strongly affected by this duality, liquid-liquid and air-liquid-liquid interfacial behavior in aqueous ternary systems, containing hydrotropes and hydrocarbons, in a broad range of compositions and at various temperatures. Phase diagrams of the studied systems, containing tertiary butanol (TBA), as a hydrotrope, are of Type 1: the hydrotrope, at the experimental conditions, is completely miscible with water and with all investigated hydrocarbons [cyclohexane (CHX), toluene (TOL), and n-decane (DEC)], whereas the ternary mixtures exhibit liquid-liquid phase separation terminated at corresponding critical points. The shape and location of the phase separation boundary are only weakly dependent on temperature and the hydrocarbon's nature; however, the critical point in the water-TBA-DEC system is significantly shifted toward a higher TBA concentration. For the experimentally studied systems and for available data reported in the literature, we confirmed an apparently generic (for nonionic hydrotropes) phenomenon of a dual action at water-oil interfaces (earlier found in water-TBA-CHX [J. Phys. Chem. C 2017, 121, 16423]): at low concentrations, hydrotropes saturate the water-oil interface like a surfactant, whereas at higher concentrations they act as co-solvents, resulting in vanishing interfacial tension at the liquid-liquid critical point. We suggest a universal crossover function that accurately interpolates the two theoretically based limits of interfacial behavior. This crossover function also accounts for earlier deviations from Langmuir-von Szyszkowski limiting behavior in the water-TBA-DEC system, caused by lower solubility (relative to other studied hydrocarbons) of DEC in water. An intriguing correlation between the dual action of hydrotropes at the water-oil interface and the behavior of the liquid-air interfaces is also discussed.

19.
Int J Syst Evol Microbiol ; 69(8): 2299-2304, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31125304

ABSTRACT

A novel aerobic bacterium, designated as strain GM2012T, was isolated from a microbial mat proliferating under the flow of thermal water dissipating from the wall of a 4000 m deep mine in South Africa. The cells were non-motile cocci, capable of budding, occurred in single or gathered in aggregates. The organism is a strictly aerobic chemoorganoheterotroph, preferring simple sugars and polysaccharides as growth substrates. The optimal growth occurred at 42 °C and pH 7.5-7.7. The predominant fatty acids were palmitate, stearate and oleate. The G+C content of the DNA was 70.1 mol%. The 16S rRNA gene sequence analysis placed strain GM2012T within the family Isosphaeraceae of the order Planctomycetales with 88-89 % sequence identity to Isosphaera pallida, Aquisphaeragiovannonii, Singulisphaera acidiphila, Paludisphaera borealis and Tundrisphaera lichenicola type strains. Based on the genotypic and phenotypic distinctive features of the new strain, we propose a novel genus and species Tautonia sociabilis gen. nov., sp. nov. with the type strain GM2012T (=VKM B-2860,=KCTC 72013).


Subject(s)
Groundwater/microbiology , Phylogeny , Planctomycetales/classification , Water Microbiology , Bacterial Typing Techniques , Base Composition , DNA, Bacterial/genetics , Fatty Acids/chemistry , Mining , Planctomycetales/isolation & purification , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , South Africa
20.
Nanomaterials (Basel) ; 8(6)2018 May 31.
Article in English | MEDLINE | ID: mdl-29857546

ABSTRACT

Quantum dots (QD) are widely used for cellular labeling due to enhanced brightness, resistance to photobleaching, and multicolor light emissions. CdS and CdxZn1-xS nanoparticles with sizes of 6⁻8 nm were synthesized via a ligand assisted technique inside and outside of 50 nm diameter halloysite clay nanotubes (QD were immobilized on the tube's surface). The halloysite⁻QD composites were tested by labeling human skin fibroblasts and prostate cancer cells. In human cell cultures, halloysite⁻QD systems were internalized by living cells, and demonstrated intense and stable fluorescence combined with pronounced nanotube light scattering. The best signal stability was observed for QD that were synthesized externally on the amino-grafted halloysite. The best cell viability was observed for CdxZn1-xS QD immobilized onto the azine-grafted halloysite. The possibility to use QD clay nanotube core-shell nanoarchitectures for the intracellular labeling was demonstrated. A pronounced scattering and fluorescence by halloysite⁻QD systems allows for their promising usage as markers for biomedical applications.

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