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1.
medRxiv ; 2024 Aug 16.
Article in English | MEDLINE | ID: mdl-39185539

ABSTRACT

Higher-order cognitive and affective functions are supported by large-scale networks in the brain. Dysfunction in different networks is proposed to associate with distinct symptoms in neuro-psychiatric disorders. However, the specific networks targeted by current clinical transcranial magnetic stimulation (TMS) approaches are unclear. While standard-of-care TMS relies on scalp-based landmarks, recent FDA-approved TMS protocols use individualized functional connectivity with the subgenual anterior cingulate cortex (sgACC) to optimize TMS targeting. Leveraging previous work on precision network estimation and recent advances in network-level TMS targeting, we demonstrate that clinical TMS approaches target different functional networks between individuals. Homotopic scalp positions (left F3 and right F4) target different networks within and across individuals, and right F4 generally favors a right-lateralized control network. We also modeled the impact of targeting the dorsolateral prefrontal cortex (dlPFC) zone anticorrelated with the sgACC and found that the individual-specific anticorrelated region variably targets a network coupled to reward circuitry. Combining individualized, precision network mapping and electric field (E-field) modeling, we further illustrate how modeling can be deployed to prospectively target distinct closely localized association networks in the dlPFC with meaningful spatial selectivity and E-field intensity. Lastly, our findings emphasize differences between selectivity and maximal intensity, highlighting the need to consider both metrics in precision TMS efforts.

2.
Brain Stimul ; 17(4): 958-969, 2024.
Article in English | MEDLINE | ID: mdl-39094682

ABSTRACT

BACKGROUND: Transcranial focused ultrasound (tFUS) neuromodulation has shown promise in animals but is challenging to translate to humans because of the thicker skull that heavily scatters ultrasound waves. OBJECTIVE: We develop and disseminate a model-based navigation (MBN) tool for acoustic dose delivery in the presence of skull aberrations that is easy to use by non-specialists. METHODS: We pre-compute acoustic beams for thousands of virtual transducer locations on the scalp of the subject under study. We use the hybrid angular spectrum solver mSOUND, which runs in ∼4 s per solve per CPU yielding pre-computation times under 1 h for scalp meshes with up to 4000 faces and a parallelization factor of 5. We combine this pre-computed set of beam solutions with optical tracking, thus allowing real-time display of the tFUS beam as the operator freely navigates the transducer around the subject' scalp. We assess the impact of MBN versus line-of-sight targeting (LOST) positioning in simulations of 13 subjects. RESULTS: Our navigation tool has a display refresh rate of ∼10 Hz. In our simulations, MBN increased the acoustic dose in the thalamus and amygdala by 8-67 % compared to LOST and avoided complete target misses that affected 10-20 % of LOST cases. MBN also yielded a lower variability of the deposited dose across subjects than LOST. CONCLUSIONS: MBN may yield greater and more consistent (less variable) ultrasound dose deposition than transducer placement with line-of-sight targeting, and thus could become a helpful tool to improve the efficacy of tFUS neuromodulation.


Subject(s)
Amygdala , Thalamus , Humans , Thalamus/physiology , Thalamus/diagnostic imaging , Amygdala/physiology , Amygdala/diagnostic imaging , Computer Simulation
3.
bioRxiv ; 2024 Jun 09.
Article in English | MEDLINE | ID: mdl-38645100

ABSTRACT

Across all domains of brain stimulation (neuromodulation), conventional analysis of neuron activation involves two discrete steps: i) prediction of macroscopic electric field, ignoring presence of cells and; ii) prediction of cell activation from tissue electric fields. The first step assumes that current flow is not distorted by the dense tortuous network of cell structures. The deficiencies of this assumption have long been recognized, but - except for trivial geometries - ignored, because it presented intractable computation hurdles. This study introduces a novel approach for analyzing electric fields within a microscopically realistic brain volume. Our pipeline overcomes the technical intractability that prevented such analysis while also showing significant implications for brain stimulation. Contrary to the standard finite element method (FEM), we suggest using a nested iterative boundary element method (BEM) coupled with the fast multipole method (FMM). This approach allows for solving problems with multiple length scales more efficiently. A target application is a subvolume of the L2/3 P36 mouse primary visual cortex containing approximately 400 detailed densely packed neuronal cells at a resolution of 100 nm, which is obtained from scanning electron microscopy data. Our immediate result is a reduction of the stimulation field strength necessary for neuron activation by a factor of 0.85-0.55 (by 15%-45%) as compared to macroscopic predictions. This is in line with modern experimental data stating that existing macroscopic theories substantially overestimate electric field levels necessary for brain stimulation.

5.
Phys Med Biol ; 69(5)2024 Feb 28.
Article in English | MEDLINE | ID: mdl-38316038

ABSTRACT

Objective.In our recent work pertinent to modeling of brain stimulation and neurophysiological recordings, substantial modeling errors in the computed electric field and potential have sometimes been observed for standard multi-compartment head models. The goal of this study is to quantify those errors and, further, eliminate them through an adaptive mesh refinement (AMR) algorithm. The study concentrates on transcranial magnetic stimulation (TMS), transcranial electrical stimulation (TES), and electroencephalography (EEG) forward problems.Approach.We propose, describe, and systematically investigate an AMR method using the boundary element method with fast multipole acceleration (BEM-FMM) as the base numerical solver. The goal is to efficiently allocate additional unknowns to critical areas of the model, where they will best improve solution accuracy. The implemented AMR method's accuracy improvement is measured on head models constructed from 16 Human Connectome Project subjects under problem classes of TES, TMS, and EEG. Errors are computed between three solutions: an initial non-adaptive solution, a solution found after applying AMR with a conservative refinement rate, and a 'silver-standard' solution found by subsequent 4:1 global refinement of the adaptively-refined model.Main results.Excellent agreement is shown between the adaptively-refined and silver-standard solutions for standard head models. AMR is found to be vital for accurate modeling of TES and EEG forward problems for standard models: an increase of less than 25% (on average) in number of mesh elements for these problems, efficiently allocated by AMR, exposes electric field/potential errors exceeding 60% (on average) in the solution for the unrefined models.Significance.This error has especially important implications for TES dosing prediction-where the stimulation strength plays a central role-and for EEG lead fields. Though the specific form of the AMR method described here is implemented for the BEM-FMM, we expect that AMR is applicable and even required for accurate electromagnetic simulations by other numerical modeling packages as well.


Subject(s)
Head , Silver , Humans , Head/physiology , Transcranial Magnetic Stimulation/methods , Electroencephalography/methods , Electromagnetic Phenomena , Brain/physiology
7.
IEEE Trans Biomed Eng ; 71(1): 307-317, 2024 Jan.
Article in English | MEDLINE | ID: mdl-37535481

ABSTRACT

OBJECTIVE: Biophysical models of neural stimulation are a valuable approach to explaining the mechanisms of neuronal recruitment via applied extracellular electric fields. Typically, the applied electric field is estimated via a macroscopic finite element method solution and then applied to cable models as an extracellular voltage source. However, the field resolution is limited by the finite element size (typically 10's-100's of times greater than average neuronal cross-section). As a result, induced charges deposited onto anatomically realistic curved membrane interfaces are not taken into consideration. However, these details may alter estimates of the applied electric field and predictions of neural tissue activation. METHODS: To estimate microscopic variations of the electric field, data for intra-axonal space segmented from 3D scanning electron microscopy of the mouse brain genu of corpus callosum were used. The boundary element fast multipole method was applied to accurately compute the extracellular solution. Neuronal recruitment was then estimated via an activating function. RESULTS: Taking the physical structure of the arbor into account generally predicts higher values of the activating function. The relative integral 2-norm difference is 90% on average when the entire axonal arbor is present. A large fraction of this difference might be due to the axonal body itself. When an isolated physical axon is considered with all other axons removed, the relative integral 2-norm difference between the single-axon solution and the complete solution is 25% on average. CONCLUSION: Our result may provide an explanation as to why Deep Brain Stimulation experiments typically predict lower activation thresholds than commonly used FEM/Cable model approaches to predicting neuronal responses to extracellular electrical stimulation. SIGNIFICANCE: These results may change methods for bi-domain neural modeling and neural excitation.


Subject(s)
Axons , Neurons , Animals , Mice , Axons/physiology , Neurons/physiology , Electric Stimulation/methods , Models, Neurological
8.
Biomed Phys Eng Express ; 10(1)2023 11 30.
Article in English | MEDLINE | ID: mdl-37983756

ABSTRACT

Transcranial magnetic stimulation (TMS) studies with small animals can provide useful knowledge of activating regions and mechanisms. Along with this, functional magnetic resonance imaging (fMRI) in mice and rats is increasingly often used to draw important conclusions about brain connectivity and functionality. For cases of both low- and high-frequency TMS studies, a high-quality computational surface-based rodent model may be useful as a tool for performing supporting modeling and optimization tasks. This work presents the development and usage of an accurate CAD model of a mouse that has been optimized for use in computational electromagnetic modeling in any frequency range. It is based on the labeled atlas data of the Digimouse archive. The model includes a relatively accurate four-compartment brain representation (the 'whole brain' according to the original terminology, external cerebrum, cerebellum, and striatum [9]) and contains 21 distinct compartments in total. Four examples of low- and high frequency modeling have been considered to demonstrate the utility and applicability of the model.


Subject(s)
Brain Mapping , Brain , Mice , Rats , Animals , Brain Mapping/methods , Brain/diagnostic imaging , Brain/physiology , Transcranial Magnetic Stimulation/methods , Head , Electromagnetic Phenomena , Disease Models, Animal
9.
Nat Ment Health ; 1(5): 346-360, 2023 May.
Article in English | MEDLINE | ID: mdl-37982031

ABSTRACT

Repetitive transcranial magnetic stimulation (TMS), when applied to the dorsolateral prefrontal cortex (dlPFC), treats depression. Therapeutic effects are hypothesized to arise from propagation of local dlPFC stimulation effects across distributed networks; however, the mechanisms of this remain unresolved. dlPFC contains representations of different networks. As such, dlPFC TMS may exert different effects depending on the network being stimulated. Here, to test this, we applied high-frequency TMS to two nearby dlPFC targets functionally embedded in distinct anti-correlated networks-the default and salience networks- in the same individuals in separate sessions. Local and distributed TMS effects were measured with combined 18fluorodeoxyglucose positron emission tomography and functional magnetic resonance imaging. Identical TMS patterns caused opposing effects on local glucose metabolism: metabolism increased at the salience target following salience TMS but decreased at the default target following default TMS. At the distributed level, both conditions increased functional connectivity between the default and salience networks, with this effect being dramatically larger following default TMS. Metabolic and haemodynamic effects were also linked: across subjects, the magnitude of local metabolic changes correlated with the degree of functional connectivity changes. These results suggest that TMS effects upon dlPFC are network specific. They also invoke putative antidepressant mechanisms of TMS: network de-coupling.

10.
Cereb Cortex ; 33(24): 11517-11525, 2023 12 09.
Article in English | MEDLINE | ID: mdl-37851854

ABSTRACT

Speech and language processing involve complex interactions between cortical areas necessary for articulatory movements and auditory perception and a range of areas through which these are connected and interact. Despite their fundamental importance, the precise mechanisms underlying these processes are not fully elucidated. We measured BOLD signals from normal hearing participants using high-field 7 Tesla fMRI with 1-mm isotropic voxel resolution. The subjects performed 2 speech perception tasks (discrimination and classification) and a speech production task during the scan. By employing univariate and multivariate pattern analyses, we identified the neural signatures associated with speech production and perception. The left precentral, premotor, and inferior frontal cortex regions showed significant activations that correlated with phoneme category variability during perceptual discrimination tasks. In addition, the perceived sound categories could be decoded from signals in a region of interest defined based on activation related to production task. The results support the hypothesis that articulatory motor networks in the left hemisphere, typically associated with speech production, may also play a critical role in the perceptual categorization of syllables. The study provides valuable insights into the intricate neural mechanisms that underlie speech processing.


Subject(s)
Speech Perception , Speech , Humans , Speech/physiology , Magnetic Resonance Imaging/methods , Brain Mapping/methods , Auditory Perception/physiology , Speech Perception/physiology
11.
bioRxiv ; 2023 Aug 21.
Article in English | MEDLINE | ID: mdl-37662227

ABSTRACT

Objective: This study aims to describe a MATLAB software package for transcranial magnetic stimulation (TMS) coil analysis and design. Approach: Electric and magnetic fields of the coils as well as their self- and mutual (for coil arrays) inductances are computed, with or without a magnetic core. Solid and stranded (Litz wire) conductors are also taken into consideration. The starting point is the centerline of a coil conductor(s), which is a 3D curve defined by the user. Then, a wire mesh and a computer aided design (CAD) mesh for the volume conductor of a given cross-section (circular, elliptical, or rectangular) are automatically generated. Self- and mutual inductances of the coil(s) are computed. Given the conductor current and its time derivative, electric and magnetic fields of the coil(s) are determined anywhere in space.Computations are performed with the fast multipole method (FMM), which is the most efficient way to evaluate the fields of many elementary current elements (current dipoles) comprising the current carrying conductor at a large number of observation points. This is the major underlying mathematical operation behind both inductance and field calculations. Main Results: The wire-based approach enables precise replication of even the most complex physical conductor geometries, while the FMM acceleration quickly evaluates large quantities of elementary current filaments. Agreement to within 0.74% was obtained between the inductances computed by the FMM method and ANSYS Maxwell 3D for the same coil model. Although not provided in this study, it is possible to evaluate non-linear magnetic cores in addition to the linear core exemplified. An experimental comparison was carried out against a physical MagVenture C-B60 coil; the measured and simulated inductances differed by only 1.25%, and nearly perfect correlation was found between the measured and computed E-field values at each observation point. Significance: The developed software package is applicable to any quasistatic inductor design, not necessarily to the TMS coils only.

12.
bioRxiv ; 2023 Aug 15.
Article in English | MEDLINE | ID: mdl-37645957

ABSTRACT

Objective: In our recent work pertinent to modeling of brain stimulation and neurophysiological recordings, substantial modeling errors in the computed electric field and potential have sometimes been observed for standard multi-compartment head models. The goal of this study is to quantify those errors and, further, eliminate them through an adaptive mesh refinement (AMR) algorithm. The study concentrates on transcranial magnetic stimulation (TMS), transcranial electrical stimulation (TES), and electroencephalography (EEG) forward problems. Approach: We propose, describe, and systematically investigate an AMR method using the Boundary Element Method with Fast Multipole Acceleration (BEM-FMM) as the base numerical solver. The goal is to efficiently allocate additional unknowns to critical areas of the model, where they will best improve solution accuracy.The implemented AMR method's accuracy improvement is measured on head models constructed from 16 Human Connectome Project subjects under problem classes of TES, TMS, and EEG. Errors are computed between three solutions: an initial non-adaptive solution, a solution found after applying AMR with a conservative refinement rate, and a "silver-standard" solution found by subsequent 4:1 global refinement of the adaptively-refined model. Main Results: Excellent agreement is shown between the adaptively-refined and silver-standard solutions for standard head models. AMR is found to be vital for accurate modeling of TES and EEG forward problems for standard models: an increase of less than 25% (on average) in number of mesh elements for these problems, efficiently allocated by AMR, exposes electric field/potential errors exceeding 60% (on average) in the solution for the unrefined models. Significance: This error has especially important implications for TES dosing prediction - where the stimulation strength plays a central role - and for EEG lead fields. Though the specific form of the AMR method described here is implemented for the BEM-FMM, we expect that AMR is applicable and even required for accurate electromagnetic simulations by other numerical modeling packages as well.

13.
bioRxiv ; 2023 Jul 03.
Article in English | MEDLINE | ID: mdl-37461673

ABSTRACT

BACKGROUND: The association between brain regions involved in speech production and those that play a role in speech perception is not yet fully understood. We compared speech production related brain activity with activations resulting from perceptual categorization of syllables using high field 7 Tesla functional magnetic resonance imaging (fMRI) at 1-mm isotropic voxel resolution, enabling high localization accuracy compared to previous studies. METHODS: Blood oxygenation level dependent (BOLD) signals were obtained in 20 normal hearing subjects using a simultaneous multi-slice (SMS) 7T echo-planar imaging (EPI) acquisition with whole-head coverage and 1 mm isotropic resolution. In a speech production localizer task, subjects were asked to produce a silent lip-round vowel /u/ in response to the visual cue "U" or purse their lips when they saw the cue "P". In a phoneme discrimination task, subjects were presented with pairs of syllables, which were equiprobably identical or different along an 8-step continuum between the prototypic /ba/ and /da/ sounds. After the presentation of each stimulus pair, the subjects were asked to indicate whether the two syllables they heard were identical or different by pressing one of two buttons. In a phoneme classification task, the subjects heard only one syllable and asked to indicate whether it was /ba/ or /da/. RESULTS: Univariate fMRI analyses using a parametric modulation approach suggested that left motor, premotor, and frontal cortex BOLD activations correlate with phoneme category variability in the /ba/-/da/ discrimination task. In contrast, the variability related to acoustic features of the phonemes were the highest in the right primary auditory cortex. Our multivariate pattern analysis (MVPA) suggested that left precentral/inferior frontal cortex areas, which were associated with speech production according to the localizer task, play a role also in perceptual categorization of the syllables. CONCLUSIONS: The results support the hypothesis that articulatory motor networks in the left hemisphere that are activated during speech production could also have a role in perceptual categorization of syllables. Importantly, high voxel-resolution combined with advanced coil technology allowed us to pinpoint the exact brain regions involved in both perception and production tasks.

14.
J Neural Eng ; 20(4)2023 07 19.
Article in English | MEDLINE | ID: mdl-37429285

ABSTRACT

Objective.The motor hyperdirect pathway (HDP) is a key target in the treatment of Parkinson's disease with deep brain stimulation (DBS). Biophysical models of HDP DBS have been used to explore the mechanisms of stimulation. Built upon finite element method volume conductor solutions, such models are limited by a resolution mismatch, where the volume conductor is modeled at the macro scale, while the neural elements are at the micro scale. New techniques are needed to better integrate volume conductor models with neuron models.Approach.We simulated subthalamic DBS of the human HDP using finely meshed axon models to calculate surface charge deposition on insulting membranes of nonmyelinated axons. We converted the corresponding double layer extracellular problem to a single layer problem and applied the well-conditioned charge-based boundary element fast multipole method (BEM-FMM) with unconstrained numerical spatial resolution. Commonly used simplified estimations of membrane depolarization were compared with more realistic solutions.Main result.Neither centerline potential nor estimates of axon recruitment were impacted by the estimation method used except at axon bifurcations and hemispherical terminations. Local estimates of axon polarization were often much higher at bifurcations and terminations than at any other place along the axon and terminal arbor. Local average estimates of terminal electric field are higher by 10%-20%.Significance. Biophysical models of action potential initiation in the HDP suggest that axon terminations are often the lowest threshold elements for activation. The results of this study reinforce that hypothesis and suggest that this phenomenon is even more pronounced than previously realized.


Subject(s)
Deep Brain Stimulation , Parkinson Disease , Subthalamic Nucleus , Humans , Subthalamic Nucleus/physiology , Deep Brain Stimulation/methods , Axons/physiology , Neurons/physiology , Parkinson Disease/therapy
15.
Brain Stimul ; 16(4): 1021-1031, 2023.
Article in English | MEDLINE | ID: mdl-37307872

ABSTRACT

PURPOSE: Multichannel Transcranial Magnetic Stimulation (mTMS) [1] is a novel non-invasive brain stimulation technique allowing multiple sites to be stimulated simultaneously or sequentially under electronic control without movement of the coils. To enable simultaneous mTMS and MR imaging, we have designed and constructed a whole-head 28-channel receive-only RF coil at 3T. METHODS: A helmet-shaped structure was designed considering a specific layout for a mTMS system with holes for positioning the TMS units next to the scalp. Diameter of the TMS units defined the diameter of RF loops. The placement of the preamplifiers was designed to minimize possible interactions and to allow straightforward positioning of the mTMS units around the RF coil. Interactions between TMS-MRI were analyzed for the whole-head system extending the results presented in previous publications [2]. Both SNR- and g-factors maps were obtained to compare the imaging performance of the coil with commercial head coils. RESULTS: Sensitivity losses for the RF elements containing TMS units show a well-defined spatial pattern. Simulations indicate that the losses are predominantly caused by eddy currents on the coil wire windings. The average SNR performance of the TMSMR 28-channel coil is about 66% and 86% of the SNR of the 32/20-channel head coil respectively. The g-factor values of the TMSMR 28-channel coil are similar to the 32-channel coil and significantly better than the 20-channel coil. CONCLUSION: We present the TMSMR 28-channel coil, a head RF coil array to be integrated with a multichannel 3-axisTMS coil system, a novel tool that will enable causal mapping of human brain function.


Subject(s)
Brain , Transcranial Magnetic Stimulation , Humans , Brain/diagnostic imaging , Transcranial Magnetic Stimulation/methods , Magnetic Resonance Imaging/methods , Stereotaxic Techniques , Scalp , Phantoms, Imaging , Equipment Design
16.
Commun Biol ; 6(1): 294, 2023 03 20.
Article in English | MEDLINE | ID: mdl-36941477

ABSTRACT

Recent research suggests that working memory (WM), the mental sketchpad underlying thinking and communication, is maintained by multiple regions throughout the brain. Whether parts of a stable WM representation could be distributed across these brain regions is, however, an open question. We addressed this question by examining the content-specificity of connectivity-pattern matrices between subparts of cortical regions-of-interest (ROI). These connectivity patterns were calculated from functional MRI obtained during a ripple-sound auditory WM task. Statistical significance was assessed by comparing the decoding results to a null distribution derived from a permutation test considering all comparable two- to four-ROI connectivity patterns. Maintained WM items could be decoded from connectivity patterns across ROIs in frontal, parietal, and superior temporal cortices. All functional connectivity patterns that were specific to maintained sound content extended from early auditory to frontoparietal cortices. Our results demonstrate that WM maintenance is supported by content-specific patterns of functional connectivity across different levels of cortical hierarchy.


Subject(s)
Brain Mapping , Memory, Short-Term , Humans , Brain Mapping/methods , Brain/diagnostic imaging , Magnetic Resonance Imaging/methods , Sound
17.
Sci Transl Med ; 15(677): eabq6885, 2023 01 04.
Article in English | MEDLINE | ID: mdl-36599003

ABSTRACT

Facilitating axon regeneration in the injured central nervous system remains a challenging task. RAF-MAP2K signaling plays a key role in axon elongation during nervous system development. Here, we show that conditional expression of a constitutively kinase-activated BRAF in mature corticospinal neurons elicited the expression of a set of transcription factors previously implicated in the regeneration of zebrafish retinal ganglion cell axons and promoted regeneration and sprouting of corticospinal tract (CST) axons after spinal cord injury in mice. Newly sprouting axon collaterals formed synaptic connections with spinal interneurons, resulting in improved recovery of motor function. Noninvasive suprathreshold high-frequency repetitive transcranial magnetic stimulation (HF-rTMS) activated the BRAF canonical downstream effectors MAP2K1/2 and modulated the expression of a set of regeneration-related transcription factors in a pattern consistent with that induced by BRAF activation. HF-rTMS enabled CST axon regeneration and sprouting, which was abolished in MAP2K1/2 conditional null mice. These data collectively demonstrate a central role of MAP2K signaling in augmenting the growth capacity of mature corticospinal neurons and suggest that HF-rTMS might have potential for treating spinal cord injury by modulating MAP2K signaling.


Subject(s)
Axons , Spinal Cord Injuries , Animals , Mice , Axons/physiology , Genetic Engineering , Nerve Regeneration/physiology , Proto-Oncogene Proteins B-raf/metabolism , Pyramidal Tracts/metabolism , Recovery of Function/physiology , Spinal Cord Injuries/genetics , Spinal Cord Injuries/therapy , Spinal Cord Injuries/metabolism , Transcranial Magnetic Stimulation , Transcription Factors/metabolism , Zebrafish
18.
Hum Brain Mapp ; 44(4): 1496-1514, 2023 03.
Article in English | MEDLINE | ID: mdl-36477997

ABSTRACT

Diffusion-weighted magnetic resonance imaging (DW-MRI) has evolved to provide increasingly sophisticated investigations of the human brain's structural connectome in vivo. Restriction spectrum imaging (RSI) is a method that reconstructs the orientation distribution of diffusion within tissues over a range of length scales. In its original formulation, RSI represented the signal as consisting of a spectrum of Gaussian diffusion response functions. Recent technological advances have enabled the use of ultra-high b-values on human MRI scanners, providing higher sensitivity to intracellular water diffusion in the living human brain. To capture the complex diffusion time dependence of the signal within restricted water compartments, we expand upon the RSI approach to represent restricted water compartments with non-Gaussian response functions, in an extended analysis framework called linear multi-scale modeling (LMM). The LMM approach is designed to resolve length scale and orientation-specific information with greater specificity to tissue microstructure in the restricted and hindered compartments, while retaining the advantages of the RSI approach in its implementation as a linear inverse problem. Using multi-shell, multi-diffusion time DW-MRI data acquired with a state-of-the-art 3 T MRI scanner equipped with 300 mT/m gradients, we demonstrate the ability of the LMM approach to distinguish different anatomical structures in the human brain and the potential to advance mapping of the human connectome through joint estimation of the fiber orientation distributions and compartment size characteristics.


Subject(s)
Connectome , Diffusion Magnetic Resonance Imaging , Humans , Diffusion Magnetic Resonance Imaging/methods , Brain/diagnostic imaging , Brain/physiology , Algorithms , Water
19.
J Neural Eng ; 20(1)2023 01 25.
Article in English | MEDLINE | ID: mdl-36548994

ABSTRACT

Objective.Accurate modeling of transcranial magnetic stimulation (TMS) coils with the magnetic core is largely an open problem since commercial (quasi) magnetostatic solvers do not output specific field characteristics (e.g. induced electric field) and have difficulties when incorporating realistic head models. Many open-source TMS softwares do not include magnetic cores into consideration. This present study reports an algorithm for modeling TMS coils with a (nonlinear) magnetic core and validates the algorithm through comparison with finite-element method simulations and experiments.Approach.The algorithm uses the boundary element fast multipole method applied to all facets of a tetrahedral core mesh for a single-state solution and the successive substitution method for nonlinear convergence of the subsequent core states. The algorithm also outputs coil inductances, with or without magnetic cores. The coil-core combination is solved only once i.e. before incorporating the head model. The resulting primary TMS electric field is proportional to the total vector potential in the quasistatic approximation; it therefore also employs the precomputed core magnetization.Main results.The solver demonstrates excellent convergence for typical TMS field strengths and for analyticalB-Happroximations of experimental magnetization curves such as Froelich's equation or an arctangent equation. Typical execution times are 1-3 min on a common multicore workstation. For a simple test case of a cylindrical core within a one-turn coil, our solver computed the small-signal inductance nearly identical to that from ANSYS Maxwell. For a multiturn rodent TMS coil with a core, the modeled inductance matched the experimental measured value to within 5%.Significance.Incorporating magnetic core in TMS coil design has advantages of field shaping and energy efficiency. Our software package can facilitate model-informed design of more efficiency TMS systems and guide selection of core material. These models can also inform dosing with existing clinical TMS systems that use magnetic cores.


Subject(s)
Software , Transcranial Magnetic Stimulation , Transcranial Magnetic Stimulation/methods , Finite Element Analysis , Algorithms , Magnetic Phenomena , Brain/physiology
20.
Brain Struct Funct ; 227(9): 2909-2922, 2022 Dec.
Article in English | MEDLINE | ID: mdl-35536387

ABSTRACT

Axonal damage in the corpus callosum is prevalent in multiple sclerosis (MS). Although callosal damage is associated with disrupted functional connectivity between hemispheres, it is unclear how this relates to cognitive and physical disability. We investigated this phenomenon using advanced measures of microstructural integrity in the corpus callosum and surface-based homologous inter-hemispheric connectivity (sHIC) in the cortex. We found that sHIC was significantly decreased in primary motor, somatosensory, visual, and temporal cortical areas in a group of 36 participants with MS (29 relapsing-remitting, 4 secondary progressive MS, and 3 primary-progressive MS) compared with 42 healthy controls (cluster level, p < 0.05). In participants with MS, global sHIC correlated with fractional anisotropy and restricted volume fraction in the posterior segment of the corpus callosum (r = 0.426, p = 0.013; r = 0.399, p = 0.020, respectively). Lower sHIC, particularly in somatomotor and posterior cortical areas, was associated with cognitive impairment and higher disability scores on the Expanded Disability Status Scale (EDSS). We demonstrated that higher levels of sHIC attenuated the effects of posterior callosal damage on physical disability and cognitive dysfunction, as measured by the EDSS and Brief Visuospatial Memory Test-Revised (interaction effect, p < 0.05). We also observed a positive association between global sHIC and years of education (r = 0.402, p = 0.018), supporting the phenomenon of "brain reserve" in MS. Our data suggest that preserved sHIC helps prevent cognitive and physical decline in MS.


Subject(s)
Cognitive Dysfunction , Multiple Sclerosis, Relapsing-Remitting , Multiple Sclerosis , Humans , Corpus Callosum/diagnostic imaging , Disability Evaluation , Magnetic Resonance Imaging
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