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1.
Nat Commun ; 12(1): 2173, 2021 04 12.
Article in English | MEDLINE | ID: mdl-33846289

ABSTRACT

The closely related inhibitory killer-cell immunoglobulin-like receptors (KIR), KIR2DL2 and KIR2DL3, regulate the activation of natural killer cells (NK) by interacting with the human leukocyte antigen-C1 (HLA-C1) group of molecules. KIR2DL2, KIR2DL3 and HLA-C1 are highly polymorphic, with this variation being associated with differences in the onset and progression of some human diseases. However, the molecular bases underlying these associations remain unresolved. Here, we determined the crystal structures of KIR2DL2 and KIR2DL3 in complex with HLA-C*07:02 presenting a self-epitope. KIR2DL2 differed from KIR2DL3 in docking modality over HLA-C*07:02 that correlates with variabilty of recognition of HLA-C1 allotypes. Mutagenesis assays indicated differences in the mechanism of HLA-C1 allotype recognition by KIR2DL2 and KIR2DL3. Similarly, HLA-C1 allotypes differed markedly in their capacity to inhibit activation of primary NK cells. These functional differences derive, in part, from KIR2DS2 suggesting KIR2DL2 and KIR2DL3 binding geometries combine with other factors to distinguish HLA-C1 functional recognition.


Subject(s)
HLA-C Antigens/metabolism , Molecular Docking Simulation , Receptors, KIR2DL2/chemistry , Receptors, KIR2DL2/metabolism , Receptors, KIR2DL3/chemistry , Receptors, KIR2DL3/metabolism , HEK293 Cells , Humans , Killer Cells, Natural/immunology , Ligands , Mutant Proteins/chemistry , Mutant Proteins/metabolism , Peptides/chemistry , Protein Binding , Protein Interaction Mapping
2.
Nat Struct Mol Biol ; 24(4): 387-394, 2017 04.
Article in English | MEDLINE | ID: mdl-28218747

ABSTRACT

Major histocompatibility complex class I (MHC-I) molecules play a crucial role in immunity by capturing peptides for presentation to T cells and natural killer (NK) cells. The peptide termini are tethered within the MHC-I antigen-binding groove, but it is unknown whether other presentation modes occur. Here we show that 20% of the HLA-B*57:01 peptide repertoire comprises N-terminally extended sets characterized by a common motif at position 1 (P1) to P2. Structures of HLA-B*57:01 presenting N-terminally extended peptides, including the immunodominant HIV-1 Gag epitope TW10 (TSTLQEQIGW), showed that the N terminus protrudes from the peptide-binding groove. The common escape mutant TSNLQEQIGW bound HLA-B*57:01 canonically, adopting a dramatically different conformation than the TW10 peptide. This affected recognition by killer cell immunoglobulin-like receptor (KIR) 3DL1 expressed on NK cells. We thus define a previously uncharacterized feature of the human leukocyte antigen class I (HLA-I) immunopeptidome that has implications for viral immune escape. We further suggest that recognition of the HLA-B*57:01-TW10 epitope is governed by a 'molecular tension' between the adaptive and innate immune systems.


Subject(s)
HIV-1/metabolism , Histocompatibility Antigens Class I/chemistry , Immune Evasion , Peptides/chemistry , Amino Acid Sequence , Crystallography, X-Ray , Epitopes/chemistry , HEK293 Cells , Humans , Metabolome , Mutant Proteins/chemistry , Mutation/genetics , Peptides/metabolism , Protein Binding , Protein Structure, Quaternary , Receptors, KIR3DL1/metabolism , Surface Plasmon Resonance , gag Gene Products, Human Immunodeficiency Virus/chemistry , gag Gene Products, Human Immunodeficiency Virus/metabolism
3.
Springerplus ; 5(1): 815, 2016.
Article in English | MEDLINE | ID: mdl-27390655

ABSTRACT

ß-Glucan is a polysaccharide that can be extracted from fungal cell walls. Wellmune WGP(®), a preparation of ß-1,3/1,6-glucans, is a dietary supplement that has immunomodulating properties. Here we investigated the effect WGP had on a mouse model of asthma. OVA-induced asthma in mice is characterized by infiltration of eosinophils into the lung, production of Th2 cytokines and IgE. Daily oral administration of WGP (400 µg) significantly reduced the influx of eosinophils into the lungs of OVA-challenged mice compared to control mice. In addition, WGP inhibited pulmonary production of Th2 cytokines (IL-4, IL-5, IL-13), however serum IgE levels were unaffected by WGP treatment. These data indicate that WGP could potentially be useful as an oral supplement for some asthma patients, however, it would need to be combined with therapies that target other aspects of the disease such as IgE levels. As such, further studies that examine the potential of WGP in combination with other therapies should be explored.

4.
J Exp Med ; 213(5): 791-807, 2016 05 02.
Article in English | MEDLINE | ID: mdl-27045007

ABSTRACT

Natural killer (NK) cells play a key role in immunity, but how HLA class I (HLA-I) and killer cell immunoglobulin-like receptor 3DL1 (KIR3DL1) polymorphism impacts disease outcome remains unclear. KIR3DL1 (*001/*005/*015) tetramers were screened for reactivity against a panel of HLA-I molecules. This revealed different and distinct hierarchies of specificity for each KIR3DL1 allotype, with KIR3DL1*005 recognizing the widest array of HLA-I ligands. These differences were further reflected in functional studies using NK clones expressing these specific KIR3DL1 allotypes. Unexpectedly, the Ile/Thr80 dimorphism in the Bw4-motif did not categorically define strong/weak KIR3DL1 recognition. Although the KIR3DL1*001, *005, and *015 polymorphisms are remote from the KIR3DL1-HLA-I interface, the structures of these three KIR3DL1-HLA-I complexes showed that the broader HLA-I specificity of KIR3DL1*005 correlated with an altered KIR3DL1*005 interdomain positioning and increased mobility within its ligand-binding site. Collectively, we provide a generic framework for understanding the impact of KIR3DL1 polymorphism on the recognition of HLA-I allomorphs.


Subject(s)
Histocompatibility Antigens Class I/genetics , Histocompatibility Antigens Class I/immunology , Polymorphism, Genetic , Receptors, KIR3DL1/genetics , Receptors, KIR3DL1/immunology , Amino Acid Motifs , Cell Line , Female , Histocompatibility Antigens Class I/chemistry , Humans , Killer Cells, Natural/chemistry , Killer Cells, Natural/immunology , Male , Receptors, KIR3DL1/chemistry
5.
Immunol Rev ; 267(1): 148-66, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26284476

ABSTRACT

The surveillance of target cells by natural killer (NK) cells utilizes an ensemble of inhibitory and activating receptors, many of which interact with major histocompatibility complex (MHC) class I molecules. NK cell recognition of MHC class I proteins is important developmentally for the acquisition of full NK cell effector capacity and during target cell recognition, where the engagement of inhibitory receptors and MHC class I molecules attenuates NK cell activation. Human NK cells have evolved two broad strategies for recognition of human leukocyte antigen (HLA) class I molecules: (i) direct recognition of polymorphic classical HLA class I proteins by diverse receptor families such as the killer cell immunoglobulin-like receptors (KIRs), and (ii) indirect recognition of conserved sets of HLA class I-derived peptides displayed on the non-classical HLA-E for recognition by CD94-NKG2 receptors. In this review, we assess the structural basis for the interaction between these NK receptors and their HLA class I ligands and, using the suite of published KIR and CD94-NKG2 ternary complexes, highlight the features that allow NK cells to orchestrate the recognition of a range of different HLA class I proteins.


Subject(s)
HLA Antigens/immunology , Histocompatibility Antigens Class I/immunology , Killer Cells, Natural/immunology , Receptors, Natural Killer Cell/immunology , Animals , HLA Antigens/chemistry , HLA Antigens/metabolism , Histocompatibility Antigens Class I/chemistry , Histocompatibility Antigens Class I/metabolism , Humans , Killer Cells, Natural/metabolism , Ligands , Models, Molecular , Protein Binding , Protein Structure, Tertiary , Receptors, Natural Killer Cell/chemistry , Receptors, Natural Killer Cell/metabolism
7.
Eur J Immunol ; 45(7): 2052-60, 2015 Jul.
Article in English | MEDLINE | ID: mdl-25867094

ABSTRACT

Although HLA-A3 and A11 have been reported to be ligands for KIR3DL2, evidence for any in vivo relevance of this interaction is still missing. To explore the functional importance of KIR3DL2 allelic variation, we analyzed the autoimmune disease pemphigus foliaceus, previously associated (lower risk) with activating KIR genes. KIR3DL2*001 was increased in patients (odds ratio (OR) = 2.04; p = 0.007). The risk was higher for the presence of both KIR3DL2*001 and HLA-A3 or A11 (OR = 3.76, p = 0.013), providing the first evidence that HLA-A3 and A11 may interact with KIR3DL2 in vivo. The nonsynonymous single nucleotide polymorphism 1190T (rs3745902) was associated with protection (OR = 0.52, p = 0.018). This SNP results in a threonine-to-methionine substitution. Individuals who have methionine in this position exhibit a lower percentage of KIR3DL2-positive natural killer (NK) cells and also lower intensity of KIR3DL2 on expressing natural killer cells; additionally, we show that the expression of KIR3DL2 is independent of other killer cell immunoglobulin-like receptors. Pemphigus foliaceus is a very unique complex disease strongly associated with immune-related genes. It is the only autoimmune disease known to be endemic, showing a strong correlation with environmental factors. Our data demonstrate that this relatively unknown autoimmune disease may facilitate understanding of the molecular mechanisms of KIR3DL2 ligand recognition.


Subject(s)
Genetic Predisposition to Disease/genetics , HLA-A11 Antigen/genetics , HLA-A11 Antigen/metabolism , HLA-A3 Antigen/genetics , Pemphigus/genetics , Receptors, KIR3DL2/genetics , Flow Cytometry , Genotype , Humans , Polymorphism, Single Nucleotide , Protein Binding
8.
J Virol ; 89(10): 5213-21, 2015 May.
Article in English | MEDLINE | ID: mdl-25740999

ABSTRACT

UNLABELLED: Killer cell immunoglobulin-like receptors (KIRs) play an important role in the activation of natural killer (NK) cells, which in turn contribute to the effective immune control of many viral infections. In the context of HIV infection, the closely related KIR3DL1 and KIR3DS1 molecules, in particular, have been associated with disease outcome. Inhibitory signals via KIR3DL1 are disrupted by downregulation of HLA class I ligands on the infected cell surface and can also be impacted by changes in the presented peptide repertoire. In contrast, the activatory ligands for KIR3DS1 remain obscure. We used a structure-driven approach to define the characteristics of HLA class I-restricted peptides that interact with KIR3DL1 and KIR3DS1. In the case of HLA-B*57:01, we used this knowledge to identify bona fide HIV-derived peptide epitopes with similar properties. Two such peptides facilitated productive interactions between HLA-B*57:01 and KIR3DS1. These data reveal the presence of KIR3DS1 ligands within the HIV-specific peptide repertoire presented by a protective HLA class I allotype, thereby enhancing our mechanistic understanding of the processes that enable NK cells to impact disease outcome. IMPORTANCE: Natural killer (NK) cells are implicated as determinants of immune control in many viral infections, but the precise molecular mechanisms that initiate and control these responses are unclear. The activating receptor KIR3DS1 in combination with HLA-Bw4 has been associated with better outcomes in HIV infection. However, evidence of a direct interaction between these molecules is lacking. In this study, we demonstrate that KIR3DS1 recognition of HLA-Bw4 is peptide dependent. We also identify HIV-derived peptide epitopes presented by the protective HLA-B*57:01 allotype that facilitate productive interactions with KIR3DS1. Collectively, these findings suggest a mechanism whereby changes in the peptide repertoire associated with viral infection provide a trigger for KIR3DS1 engagement and NK cell activation.


Subject(s)
HLA-B Antigens/immunology , Receptors, KIR3DS1/immunology , Amino Acid Sequence , HEK293 Cells , HIV/genetics , HIV/immunology , HIV Infections/genetics , HIV Infections/immunology , HIV Infections/virology , HLA-B Antigens/chemistry , HLA-B Antigens/genetics , Host-Pathogen Interactions/genetics , Host-Pathogen Interactions/immunology , Human Immunodeficiency Virus Proteins/chemistry , Human Immunodeficiency Virus Proteins/genetics , Human Immunodeficiency Virus Proteins/immunology , Humans , Killer Cells, Natural/immunology , Models, Molecular , Mutagenesis, Site-Directed , Oligopeptides/genetics , Oligopeptides/immunology , Protein Interaction Domains and Motifs , Receptors, KIR3DL1/chemistry , Receptors, KIR3DL1/genetics , Receptors, KIR3DL1/immunology , Receptors, KIR3DS1/chemistry , Receptors, KIR3DS1/genetics
9.
J Immunol ; 194(2): 781-789, 2015 Jan 15.
Article in English | MEDLINE | ID: mdl-25480565

ABSTRACT

The killer cell Ig-like receptor 3DL1 (KIR3DL1) inhibits activation of NK cells upon interaction with HLA class I molecules such as HLA-B*57:01, which contains the Bw4 epitope spanning residues 77-83 (e.g., NLRIALR), and not with HLA allomorphs that possess the Bw6 motif (e.g., HLA-B*08:01), which differ at residues 77, 80, 81, 82, and 83. Although Bw4 residues Ile(80) and Arg(83) directly interact with KIR3DL1*001, their precise role in determining KIR3DL1-HLA-Bw4 specificity remains unclear. Recognition of HLA-B*57:01 by either KIR3DL1(+) NK cells or the NK cell line YTS transfected with KIR3DL1*001 was impaired by mutation of residues 80 and 83 of HLA-B*57:01 to the corresponding amino acids within the Bw6 motif. Conversely, the simultaneous introduction of three Bw4 residues at positions 80, 82, and 83 into HLA-B*08:01 conferred an interaction with KIR3DL1*001. Structural analysis of HLA-B*57:01, HLA-B*08:01, and mutants of each bearing substitutions at positions 80 and 83 revealed that Ile(80) and Arg(83) within the Bw4 motif constrain the conformation of Glu(76), primarily through a salt bridge between Arg(83) and Glu(76). This salt bridge was absent in HLA-Bw6 molecules as well as position 83 mutants of HLA-B*57:01. Mutation of the Bw4 residue Ile(80) also disrupted this salt bridge, providing further insight into the role that position 80 plays in mediating KIR3DL1 recognition. Thus, the strict conformation of HLA-Bw4 allotypes, held in place by the Glu(76)-Arg(83) interaction, facilitates KIR3DL1 binding, whereas Bw6 allotypes present a platform on the α1 helix that is less permissive for KIR3DL1 binding.


Subject(s)
Epitopes , HLA-B Antigens , HLA-B8 Antigen , Receptors, KIR3DL1 , Amino Acid Motifs , Cell Line , Epitopes/genetics , Epitopes/immunology , HLA-B Antigens/genetics , HLA-B Antigens/immunology , HLA-B8 Antigen/genetics , HLA-B8 Antigen/immunology , Humans , Killer Cells, Natural/cytology , Killer Cells, Natural/immunology , Mutation , Receptors, KIR3DL1/genetics , Receptors, KIR3DL1/immunology
10.
J Immunol ; 192(6): 2875-84, 2014 Mar 15.
Article in English | MEDLINE | ID: mdl-24563253

ABSTRACT

Killer Ig-like receptors (KIRs) control the activation of human NK cells via interactions with peptide-laden HLAs. KIR3DL1 is a highly polymorphic inhibitory receptor that recognizes a diverse array of HLA molecules expressing the Bw4 epitope, a group with multiple polymorphisms incorporating variants within the Bw4 motif. Genetic studies suggest that KIR3DL1 variation has functional significance in several disease states, including HIV infection. However, owing to differences across KIR3DL1 allotypes, HLA-Bw4, and associated peptides, the mechanistic link with biological outcome remains unclear. In this study, we elucidated the impact of KIR3DL1 polymorphism on peptide-laden HLA recognition. Mutational analysis revealed that KIR residues involved in water-mediated contacts with the HLA-presented peptide influence peptide binding specificity. In particular, residue 282 (glutamate) in the D2 domain underpins the lack of tolerance of negatively charged C-terminal peptide residues. Allotypic KIR3DL1 variants, defined by neighboring residue 283, displayed differential sensitivities to HLA-bound peptide, including the variable HLA-B*57:01-restricted HIV-1 Gag-derived epitope TW10. Residue 283, which has undergone positive selection during the evolution of human KIRs, also played a central role in Bw4 subtype recognition by KIR3DL1. Collectively, our findings uncover a common molecular regulator that controls HLA and peptide discrimination without participating directly in peptide-laden HLA interactions. Furthermore, they provide insight into the mechanics of interaction and generate simple, easily assessed criteria for the definition of KIR3DL1 functional groupings that will be relevant in many clinical applications, including bone marrow transplantation.


Subject(s)
HLA-B Antigens/immunology , Peptides/immunology , Receptors, KIR3DL1/immunology , Amino Acid Sequence , Binding Sites/genetics , Binding Sites/immunology , Epitopes/genetics , Epitopes/immunology , HEK293 Cells , HLA-B Antigens/chemistry , HLA-B Antigens/genetics , Human Immunodeficiency Virus Proteins/genetics , Human Immunodeficiency Virus Proteins/immunology , Humans , Jurkat Cells , Killer Cells, Natural/immunology , Killer Cells, Natural/metabolism , Models, Molecular , Mutation , Peptides/chemistry , Peptides/genetics , Polymorphism, Genetic , Protein Binding/immunology , Protein Multimerization , Protein Structure, Tertiary , Receptors, KIR3DL1/chemistry , Receptors, KIR3DL1/genetics
11.
Science ; 341(6142): 186-91, 2013 Jul 12.
Article in English | MEDLINE | ID: mdl-23846901

ABSTRACT

The magnesium transporter 1 (MAGT1) is a critical regulator of basal intracellular free magnesium (Mg(2+)) concentrations. Individuals with genetic deficiencies in MAGT1 have high levels of Epstein-Barr virus (EBV) and a predisposition to lymphoma. We show that decreased intracellular free Mg(2+) causes defective expression of the natural killer activating receptor NKG2D in natural killer (NK) and CD8(+) T cells and impairs cytolytic responses against EBV. Notably, magnesium supplementation in MAGT1-deficient patients restores intracellular free Mg(2+) and NKG2D while concurrently reducing EBV-infected cells in vivo, demonstrating a link between NKG2D cytolytic activity and EBV antiviral immunity in humans. Moreover, these findings reveal a specific molecular function of free basal intracellular Mg(2+) in eukaryotic cells.


Subject(s)
CD8-Positive T-Lymphocytes/immunology , Cytotoxicity, Immunologic , Epstein-Barr Virus Infections/immunology , Killer Cells, Natural/immunology , Magnesium Deficiency/immunology , Magnesium/immunology , NK Cell Lectin-Like Receptor Subfamily K/metabolism , Cation Transport Proteins/genetics , Cation Transport Proteins/metabolism , Humans , NK Cell Lectin-Like Receptor Subfamily K/genetics , X-Linked Combined Immunodeficiency Diseases/immunology
12.
Crit Rev Immunol ; 33(3): 203-18, 2013.
Article in English | MEDLINE | ID: mdl-23756244

ABSTRACT

Killer Immunoglobulin-like Receptors (KIR) are a family of receptors expressed on natural killer (NK) and T-cell subsets. KIR3DL1 is a highly polymorphic receptor that binds to groups of HLAA and HLA-B allotypes that express the Bw4 epitope. The variation in KIR3DL1 allotypes manifests at a number of levels. Most dramatically, a common allelic variant encodes an activating rather than an inhibitory receptor (KIR3DS1). In addition, sequence variants can affect both the frequency of expression within the NK cell population and the intensity of expression on a given cell. KIR3DL1 polymorphism also influences the interaction with HLA-Bw4 molecules, due to contacts with the HLA molecule itself and sensitivity to the presented peptide. A body of evidence from genetic association studies supports the biological significance not only of the interaction of KIR3DL1 with HLA-Bw4 but also the functional variation seen with different KIR3DL1 and HLA allotypes. In this review, we discuss our current understanding of KIR3DL1 function and our recent insights from the structure of the KIR3DL1 in complex with HLA. In addition, we will summarize our current understanding of KIR3DS1, including its ligand specificity and its role in immune responses.


Subject(s)
Receptors, KIR3DL1/immunology , Gene Expression Regulation , Histocompatibility Antigens Class I/immunology , Humans , Ligands , Polymorphism, Genetic , Protein Binding , Receptors, KIR3DL1/chemistry , Receptors, KIR3DL1/genetics
13.
PLoS Pathog ; 9(5): e1003357, 2013 May.
Article in English | MEDLINE | ID: mdl-23675302

ABSTRACT

Fungal pathogens elicit cytokine responses downstream of immunoreceptor tyrosine-based activation motif (ITAM)-coupled or hemiITAM-containing receptors and TLRs. The Linker for Activation of B cells/Non-T cell Activating Linker (LAB/NTAL) encoded by Lat2, is a known regulator of ITAM-coupled receptors and TLR-associated cytokine responses. Here we demonstrate that LAB is involved in anti-fungal immunity. We show that Lat2-/- mice are more susceptible to C. albicans infection than wild type (WT) mice. Dendritic cells (DCs) express LAB and we show that it is basally phosphorylated by the growth factor M-CSF or following engagement of Dectin-2, but not Dectin-1. Our data revealed a unique mechanism whereby LAB controls basal and fungal/pathogen-associated molecular patterns (PAMP)-induced nuclear ß-catenin levels. This in turn is important for controlling fungal/PAMP-induced cytokine production in DCs. C. albicans- and LPS-induced IL-12 and IL-23 production was blunted in Lat2-/- DCs. Accordingly, Lat2-/- DCs directed reduced Th1 polarization in vitro and Lat2-/- mice displayed reduced Natural Killer (NK) and T cell-mediated IFN-γ production in vivo/ex vivo. Thus our data define a novel link between LAB and ß-catenin nuclear accumulation in DCs that facilitates IFN-γ responses during anti-fungal immunity. In addition, these findings are likely to be relevant to other infectious diseases that require IL-12 family cytokines and an IFN-γ response for pathogen clearance.


Subject(s)
Amino Acid Transport System y+/immunology , Candidiasis/immunology , Dendritic Cells/immunology , Fusion Regulatory Protein 1, Light Chains/immunology , Lectins, C-Type/immunology , beta Catenin/immunology , Amino Acid Transport System y+/metabolism , Animals , Candidiasis/metabolism , Dendritic Cells/metabolism , Disease Models, Animal , Female , Fusion Regulatory Protein 1, Light Chains/metabolism , Interferon-gamma/biosynthesis , Interferon-gamma/immunology , Interleukin-12/biosynthesis , Interleukin-12/immunology , Lectins, C-Type/metabolism , Male , Mice , Mice, Inbred C57BL , Mice, Knockout , Reverse Transcriptase Polymerase Chain Reaction , Signal Transduction/immunology , beta Catenin/metabolism
14.
Hum Immunol ; 73(8): 783-7, 2012 Aug.
Article in English | MEDLINE | ID: mdl-22609443

ABSTRACT

While most carriers of human T-cell leukemia virus type 1 (HTLV-1) remain asymptomatic throughout their lifetime, infection is associated with the development of adult T-cell leukemia (ATL) and HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP). The exact parameters that determine these outcomes are unknown but are believed to include host genetic factors that control the immune response to infection. Host response to fellow retroviridae member HIV is influenced by the expression of members of the Killer Immunoglobulin Receptor (KIR) family including KIR3DS1. In this study we examined the association of KIR3DS1 with the outcome of HTLV-1 infection in three geographically distinct cohorts (Jamaican, Japanese and Brazilian). Despite increased prevalence of KIR3DS1 in the HAM/TSP patients of the Jamaican cohort, we found no evidence for a role of KIR3DS1 in influencing control of proviral load or disease outcome. This suggests that unlike HIV, KIR3DS1-mediated regulation of HTLV-1 infection does not occur, or is ineffective.


Subject(s)
Ethnicity , Human T-lymphotropic virus 1/immunology , Leukemia-Lymphoma, Adult T-Cell/immunology , Paraparesis, Tropical Spastic/immunology , Receptors, KIR3DS1/immunology , Spinal Cord Diseases/immunology , Adolescent , Adult , Aged , Aged, 80 and over , Asymptomatic Diseases , Brazil/epidemiology , Child , Cohort Studies , Female , Humans , Jamaica/epidemiology , Japan/epidemiology , Leukemia-Lymphoma, Adult T-Cell/complications , Leukemia-Lymphoma, Adult T-Cell/ethnology , Leukemia-Lymphoma, Adult T-Cell/virology , Male , Middle Aged , Paraparesis, Tropical Spastic/complications , Paraparesis, Tropical Spastic/ethnology , Paraparesis, Tropical Spastic/virology , Prevalence , Prognosis , Receptors, KIR3DS1/genetics , Spinal Cord Diseases/complications , Spinal Cord Diseases/ethnology , Spinal Cord Diseases/virology , Viral Load
15.
Nature ; 479(7373): 401-5, 2011 Oct 23.
Article in English | MEDLINE | ID: mdl-22020283

ABSTRACT

Members of the killer cell immunoglobulin-like receptor (KIR) family, a large group of polymorphic receptors expressed on natural killer (NK) cells, recognize particular peptide-laden human leukocyte antigen (pHLA) class I molecules and have a pivotal role in innate immune responses. Allelic variation and extensive polymorphism within the three-domain KIR family (KIR3D, domains D0-D1-D2) affects pHLA binding specificity and is linked to the control of viral replication and the treatment outcome of certain haematological malignancies. Here we describe the structure of a human KIR3DL1 receptor bound to HLA-B*5701 complexed with a self-peptide. KIR3DL1 clamped around the carboxy-terminal end of the HLA-B*5701 antigen-binding cleft, resulting in two discontinuous footprints on the pHLA. First, the D0 domain, a distinguishing feature of the KIR3D family, extended towards ß2-microglobulin and abutted a region of the HLA molecule with limited polymorphism, thereby acting as an 'innate HLA sensor' domain. Second, whereas the D2-HLA-B*5701 interface exhibited a high degree of complementarity, the D1-pHLA-B*5701 contacts were suboptimal and accommodated a degree of sequence variation both within the peptide and the polymorphic region of the HLA molecule. Although the two-domain KIR (KIR2D) and KIR3DL1 docked similarly onto HLA-C and HLA-B respectively, the corresponding D1-mediated interactions differed markedly, thereby providing insight into the specificity of KIR3DL1 for discrete HLA-A and HLA-B allotypes. Collectively, in association with extensive mutagenesis studies at the KIR3DL1-pHLA-B*5701 interface, we provide a framework for understanding the intricate interplay between peptide variability, KIR3D and HLA polymorphism in determining the specificity requirements of this essential innate interaction that is conserved across primate species.


Subject(s)
HLA-B Antigens/chemistry , HLA-B Antigens/immunology , Receptors, KIR3DL1/chemistry , Receptors, KIR3DL1/immunology , Amino Acid Sequence , Binding Sites/genetics , HLA-B Antigens/genetics , Humans , Models, Molecular , Mutant Proteins/chemistry , Mutant Proteins/genetics , Mutant Proteins/immunology , Polymorphism, Genetic/genetics , Protein Structure, Tertiary , Receptors, KIR3DL1/genetics , Structure-Activity Relationship , beta 2-Microglobulin/chemistry , beta 2-Microglobulin/immunology
16.
J Immunol ; 187(5): 2162-71, 2011 Sep 01.
Article in English | MEDLINE | ID: mdl-21804024

ABSTRACT

NK cell activity is regulated by the integration of positive and negative signals. One important source of these signals for human NK cells is the killer Ig-like receptor (KIR) family, which includes both members that transduce positive and those that generate negative signals. KIR3DL1 inhibits NK cell activity upon engagement by its ligand HLA-Bw4. The highly homologous KIR3DS1 is an activating receptor, which is implicated in the outcome of a variety of pathological situations. However, unlike KIR3DL1, direct binding of KIR3DS1(+) cells to HLA has not been demonstrated. We analyzed four key amino acid differences between KIR3DL1*01502 and KIR3DS1*013 to determine their role in KIR binding to HLA. Single substitutions of these residues dramatically reduced binding by KIR3DL1. In the reciprocal experiment, we found that the rare KIR3DS1 allotype KIR3DS1*014 binds HLA-Bw4 even though it differs from KIR3DS1*013 at only one of these positions (position 138). This reactivity was unexpectedly dependent on residues at other variable positions, as HLA-Bw4 binding was lost in receptors with KIR3DL1-like residues at both positions 199 and 138. These data provide the first evidence, to our knowledge, for the direct binding of KIR3DS1(+) cells to HLA-Bw4 and highlight the key role for position 138 in determining ligand specificity of KIR3DS1. They also reveal that KIR3DS1 reactivity and specificity is dictated by complex interactions between the residues in this region, suggesting a unique functional evolution of KIR3DS1 within the activating KIR family.


Subject(s)
HLA-B Antigens/immunology , Killer Cells, Natural/immunology , Lymphocyte Activation/immunology , Receptors, KIR3DS1/immunology , Amino Acid Sequence , Biological Evolution , HEK293 Cells , Humans , Jurkat Cells , Killer Cells, Natural/chemistry , Lymphocyte Activation/genetics , Mutagenesis, Site-Directed , Polymorphism, Genetic , Receptors, KIR3DS1/chemistry , Receptors, KIR3DS1/genetics , Transfection
17.
J Virol ; 85(12): 5970-4, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21471246

ABSTRACT

Epidemiological studies have shown the protective effect of KIR3DL1/HLA-Bw4 genotypes in human immunodeficiency virus type 1 (HIV-1) infection; however, the functional correlates for the protective effect remain unknown. We investigated whether human leukocyte antigen (HLA)-Bw4-presented HIV-1 peptides could affect the interaction between the inhibitory natural killer (NK) cell receptor KIR3DL1 and its ligand HLA-Bw4. Distinct HIV-1 epitopes differentially modulated the binding of KIR3DL1 to HLA-Bw4. Furthermore, cytotoxic T lymphocyte (CTL) escape mutations within the immunodominant HLA-B57 (Bw4)-restricted Gag epitope TSTLQEQIGW abrogated KIR3DL1 binding to HLA-B57, suggesting that sensing of CTL escape variants by NK cells can contribute to the protective effect of the KIR3DL1/HLA-Bw4 compound genotype.


Subject(s)
Epitopes, T-Lymphocyte/immunology , Gene Products, gag/genetics , Genetic Variation , HIV-1/immunology , HLA-B Antigens/metabolism , Peptides/genetics , Receptors, KIR3DL1/metabolism , Amino Acid Sequence , Epitopes, T-Lymphocyte/chemistry , Epitopes, T-Lymphocyte/genetics , Gene Products, gag/chemistry , Gene Products, gag/immunology , Gene Products, gag/metabolism , HIV Infections/immunology , HIV Infections/virology , HIV-1/genetics , HLA-B Antigens/genetics , Humans , Immune Evasion , Immunodominant Epitopes , Jurkat Cells , Killer Cells, Natural/immunology , Killer Cells, Natural/metabolism , Peptides/chemistry , Peptides/immunology , Peptides/metabolism , Point Mutation , Protein Binding/drug effects , T-Lymphocytes, Cytotoxic/immunology , T-Lymphocytes, Cytotoxic/metabolism
18.
J Immunol ; 185(3): 1393-403, 2010 Aug 01.
Article in English | MEDLINE | ID: mdl-20592278

ABSTRACT

X-linked SCID patients are deficient in functional IL-2Rgamma(c) leading to the loss of IL-2/IL-4/IL-7/IL-9/IL-15/IL-21 signaling and a lack of NK and mature T cells. Patients treated with IL-2Rgamma(c) gene therapy have T cells develop; however, their NK cell numbers remain low, suggesting antiviral responses may be compromised. Similarly, IL-2Rgamma(c)(-/-) mice reconstituted with IL-2Rgamma(c) developed few NK cells, and reconstituted T cells exhibited defective proliferative responses suggesting incomplete recovery of IL-2Rgamma(c) signaling. Given the shift toward self-inactivating long terminal repeats with weaker promoters to control the risk of leukemia, we assessed NK and T cell numbers and function in IL-2Rgamma(c)(-/-) mice reconstituted with limiting amounts of IL-2Rgamma(c). Reconstitution resulted in lower IL-2/-15-mediated STAT5 phosphorylation and proliferation in NK and T cells. However, TCR costimulation restored cytokine-driven T cell proliferation to wild-type levels. Vector modifications that improved IL-2Rgamma(c) levels increased cytokine-induced STAT5 phosphorylation in both populations and increased NK cell proliferation demonstrating that IL-2Rgamma(c) levels are limiting. In addition, although the half-lives of both NK and T cells expressing intermediate levels of IL-2Rgamma(c) are reduced compared with wild-type cells, the reduction in NK cell half-live is much more severe than in T cells. Collectively, these data indicate different IL-2Rgamma(c) signaling thresholds for lymphocyte development and proliferation making functional monitoring imperative during gene therapy. Further, our findings suggest that IL-2Rgamma(c) reconstituted T cells may persist more efficiently than NK cells due to compensation for suboptimal IL-2Rgamma(c) signaling by the TCR.


Subject(s)
Cell Differentiation/immunology , Gene Expression Regulation/immunology , Genetic Therapy/methods , Interleukin Receptor Common gamma Subunit/biosynthesis , Interleukin Receptor Common gamma Subunit/genetics , Killer Cells, Natural/immunology , Signal Transduction/immunology , T-Lymphocyte Subsets/immunology , Animals , Cell Differentiation/genetics , Cell Proliferation , Interleukin Receptor Common gamma Subunit/deficiency , Interleukin-15/antagonists & inhibitors , Interleukin-15/physiology , Interleukin-2/antagonists & inhibitors , Interleukin-2/physiology , Killer Cells, Natural/cytology , Killer Cells, Natural/metabolism , Mice , Mice, Inbred C57BL , Mice, Knockout , Mice, SCID , Phosphorylation/genetics , Phosphorylation/immunology , Receptors, Antigen, T-Cell/deficiency , Receptors, Antigen, T-Cell/genetics , Receptors, Antigen, T-Cell/physiology , STAT5 Transcription Factor/antagonists & inhibitors , STAT5 Transcription Factor/metabolism , Severe Combined Immunodeficiency/genetics , Severe Combined Immunodeficiency/immunology , Severe Combined Immunodeficiency/therapy , Signal Transduction/genetics , T-Lymphocyte Subsets/cytology , T-Lymphocyte Subsets/metabolism , Transduction, Genetic
19.
J Immunol ; 180(6): 4082-9, 2008 Mar 15.
Article in English | MEDLINE | ID: mdl-18322218

ABSTRACT

Muramyl dipeptide (MDP) is a bacterial pathogen associated molecular pattern derived from both Gram-positive and -negative bacteria. It is a specific ligand for nuclear oligomerization domain 2, a pattern recognition receptor best characterized for its role in immunosurveillance in the gut. In this study, we demonstrate that human peripheral blood NK cells express nuclear oligomerization domain 2 and respond to MDP. NK cells naturally internalize MDP leading to direct cell activation, including signaling through NFkappaB: characterized by p50/p65 heterodimers at early stimulations times and sustained activation of p50 homodimers. Moreover, MDP synergizes with IFN-alpha and IL-12 to activate NK cells and stimulate IFN-gamma secretion, suggesting a role for accessory cells in induction of an optimal NK cell response. Although IL-12 costimulation leads to a greater IFN-gamma response by NK cells, higher levels of CD69 in response to MDP are induced in the presence of IFN-alpha, suggesting that different pathogen-induced cytokine profiles will affect downstream NK cell responses. In contrast, MDP alone or in combination with either IFN-alpha or IL-12 only poorly increases NK cell cytotoxicity. In summary, this report identifies MDP as a bacterial pathogen associated molecular pattern that activates human NK cells.


Subject(s)
Acetylmuramyl-Alanyl-Isoglutamine/pharmacology , Killer Cells, Natural/immunology , Killer Cells, Natural/microbiology , Lymphocyte Activation/immunology , Receptors, Pattern Recognition/physiology , Acetylmuramyl-Alanyl-Isoglutamine/metabolism , Cell Line , Cytotoxicity, Immunologic , Endocytosis/immunology , Humans , Interferon-alpha/physiology , Killer Cells, Natural/metabolism , Monocytes/immunology , Monocytes/metabolism , NF-kappa B p50 Subunit/metabolism , Nod2 Signaling Adaptor Protein/biosynthesis , Nod2 Signaling Adaptor Protein/physiology , Proto-Oncogene Proteins c-rel/metabolism , Receptors, Pattern Recognition/metabolism , Transcription Factor RelA/metabolism
20.
Clin Immunol ; 124(3): 277-83, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17611161

ABSTRACT

Natural killer (NK) cells are part of the innate immune system important in the control of viral infections and recent evidence suggests that they may play a role in the pathogenesis of HIV. Long-term non-progressor (LTNP) HIV patients who control replication of the virus and show a delayed disease progression have naturally occurring successful immune responses to HIV. We investigated a role for NK cells in these patients. In agreement with previous reports, NK cell cytotoxic activity was decreased in viremic HIV patients relative to healthy individuals (p<0.05). Viremic HIV patients showed an altered cell surface phenotype, including a reduction in natural cytotoxicity receptor expression and an increase in leukocyte immunoglobulin-like receptor subfamily B member 1 (LILRB1) expression. These phenotypic changes were also present in LTNP patients; however, these patients showed increased levels of NK cell activity relative to viremic HIV patient group.


Subject(s)
Cytotoxicity, Immunologic/immunology , HIV Infections/immunology , HIV Long-Term Survivors , HIV-1/immunology , Killer Cells, Natural/immunology , Disease Progression , HIV Infections/virology , Humans , Killer Cells, Natural/pathology , Killer Cells, Natural/physiology , Lymphocyte Subsets/immunology , Lymphocyte Subsets/pathology , Lymphocyte Subsets/physiology , Phenotype , Receptors, Immunologic/immunology , Receptors, Immunologic/metabolism
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