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1.
Int J Mol Sci ; 25(5)2024 Feb 27.
Article in English | MEDLINE | ID: mdl-38474009

ABSTRACT

The extracellular matrix (ECM) is a complex non-cellular three-dimensional macromolecular network present within all tissues and organs, forming the foundation on which cells sit, and composed of proteins (such as collagen), glycosaminoglycans, proteoglycans, minerals, and water. The ECM provides a fundamental framework for the cellular constituents of tissue and biochemical support to surrounding cells. The ECM is a highly dynamic structure that is constantly being remodeled. Matrix metalloproteinases (MMPs) are among the most important proteolytic enzymes of the ECM and are capable of degrading all ECM molecules. MMPs play a relevant role in physiological as well as pathological processes; MMPs participate in embryogenesis, morphogenesis, wound healing, and tissue remodeling, and therefore, their impaired activity may result in several problems. MMP activity is also associated with chronic inflammation, tissue breakdown, fibrosis, and cancer invasion and metastasis. The periodontium is a unique anatomical site, composed of a variety of connective tissues, created by the ECM. During periodontitis, a chronic inflammation affecting the periodontium, increased presence and activity of MMPs is observed, resulting in irreversible losses of periodontal tissues. MMP expression and activity may be controlled in various ways, one of which is the inhibition of their activity by an endogenous group of tissue inhibitors of metalloproteinases (TIMPs), as well as reversion-inducing cysteine-rich protein with Kazal motifs (RECK).


Subject(s)
Matrix Metalloproteinases , Periodontitis , Humans , Matrix Metalloproteinases/metabolism , Periodontitis/metabolism , Periodontium/metabolism , Extracellular Matrix/metabolism , Collagen/metabolism , Inflammation/metabolism , Tissue Inhibitor of Metalloproteinases/metabolism , GPI-Linked Proteins/metabolism
2.
PLoS One ; 17(2): e0263124, 2022.
Article in English | MEDLINE | ID: mdl-35192621

ABSTRACT

Dickeya solani is a pathogen most frequently responsible for infecting potato plants in Europe. As in the case of most plant pathogens, its ability to colonize and invade the host depends on chemotaxis and motility. The coordinated movement of Dickeya over solid surfaces is governed by a quorum sensing mechanism. In D. solani motility is regulated by ExpI-ExpR proteins, homologous to luxI-luxR system from Vibrio fisheri, in which N-acyl-homoserine lactones (AHLs) serve as signaling molecules. Moreover, in many Gram-negative bacteria motility is coupled with central metabolism via carbon catabolite repression. This enables them to reach more nutrient-efficient niches. The aim of this study was to analyze the swarming motility of D. solani depending on the volume of the medium in the cultivation plate and glucose content. We show that the ability of this bacterium to move is strictly dependent on both these factors. Moreover, we analyze the production of AHLs and show that the quorum sensing mechanism in D. solani is also influenced by the availability of glucose in the medium and that the distribution of these signaling molecules are different depending on the volume of the medium in the plate.


Subject(s)
Acyl-Butyrolactones/pharmacology , Bacterial Proteins/genetics , Dickeya/drug effects , Glucose/pharmacology , Solanum tuberosum/microbiology , Virulence Factors/genetics , Acyl-Butyrolactones/metabolism , Bacterial Proteins/metabolism , Chemotaxis/drug effects , Chemotaxis/genetics , Culture Media/chemistry , Culture Media/pharmacology , Dickeya/genetics , Dickeya/metabolism , Dickeya/pathogenicity , Gene Expression Regulation, Bacterial , Glucose/metabolism , Plant Diseases/microbiology , Quorum Sensing/drug effects , Quorum Sensing/genetics , Repressor Proteins/genetics , Repressor Proteins/metabolism , Trans-Activators/genetics , Trans-Activators/metabolism , Virulence Factors/metabolism
3.
Int J Mol Sci ; 22(13)2021 Jun 22.
Article in English | MEDLINE | ID: mdl-34206444

ABSTRACT

The alarming raise of multi-drug resistance among human microbial pathogens makes the development of novel therapeutics a priority task. In contrast to conventional antibiotics, antimicrobial peptides (AMPs), besides evoking a broad spectrum of activity against microorganisms, could offer additional benefits, such as the ability to neutralize toxins, modulate inflammatory response, eradicate bacterial and fungal biofilms or prevent their development. The latter properties are of special interest, as most antibiotics available on the market have limited ability to diffuse through rigid structures of biofilms. Lipidation of AMPs is considered as an effective approach for enhancement of their antimicrobial potential and in vivo stability; however, it could also have undesired impact on selectivity, solubility or the aggregation state of the modified peptides. In the present work, we describe the results of structural modifications of compounds designed based on cationic antimicrobial peptides DK5 and CAR-PEG-DK5, derivatized at their N-terminal part with fatty acids with different lengths of carbon chain. The proposed modifications substantially improved antimicrobial properties of the final compounds and their effectiveness in inhibition of biofilm development as well as eradication of pre-formed 24 h old biofilms of Candida albicans and Staphylococcus aureus. The most active compounds (C5-DK5, C12-DK5 and C12-CAR-PEG-DK5) were also potent against multi-drug resistant Staphylococcus aureus USA300 strain and clinical isolates of Pseudomonas aeruginosa. Both experimental and in silico methods revealed strong correlation between the length of fatty acid attached to the peptides and their final membranolytic properties, tendency to self-assemble and cytotoxicity.


Subject(s)
Antimicrobial Cationic Peptides/chemistry , Antimicrobial Cationic Peptides/pharmacology , Anti-Infective Agents/pharmacology , Bacteria/drug effects , Drug Resistance, Microbial/drug effects , Drug Stability , Humans , Microbial Sensitivity Tests , Molecular Structure , Spectrum Analysis , Structure-Activity Relationship , Thermodynamics
4.
Amino Acids ; 53(8): 1257-1268, 2021 Aug.
Article in English | MEDLINE | ID: mdl-34240252

ABSTRACT

Searching for new drugs is still a challenge for science, mainly because of civilization development and globalization which promote the rapid spread of diseases, which is particularly dangerous in the case of infectious ones. Moreover, readily available already known antibiotics are often overused or misused, possibly contributing to the increase in the number of multidrug-resistant microorganisms. A consequence of this is the need for new structures of potential drugs. One of them is a benzoxazole moiety, a basic skeleton of a group of fluorescent heterocyclic compounds already widely used in chemistry, industry, and medicine, which is also present in naturally occurring biologically active compounds. Moreover, synthetic benzoxazoles are also biologically active. Considering all of that, a large group of non-proteinogenic amino acids based on 3-(2-benzoxazol-5-yl)alanine skeleton was studied in search for new antimicrobial and anticancer agents. Screening tests revealed that antibacterial potential of 41 compounds studied is not very high; however, they are selective acting only against Gram-positive bacteria (B. subtilis). Moreover, almost half of the studied compounds have antifungal properties, also against pathogens (C. albicans). Most of studied compounds are toxic to both normal and cancer cells. However, in a few cases, toxicity to normal cells is much lower than for cancer cells indicating these compounds as future anticancer agents. The research carried out on such a large group of compounds allowed to establish a structure-activity relationship which enables to select candidates for further modifications, necessary to improve their biological activity and obtain a new lead structure with potential for therapeutic use.


Subject(s)
Alanine/analogs & derivatives , Alanine/chemistry , Alanine/pharmacology , Animals , Candida albicans/drug effects , Cell Line, Tumor , Drug Screening Assays, Antitumor , Gram-Positive Bacteria/drug effects , Humans , Microbial Sensitivity Tests , Rats , Structure-Activity Relationship
5.
Arch Virol ; 166(8): 2305-2310, 2021 Aug.
Article in English | MEDLINE | ID: mdl-34014385

ABSTRACT

A temperate siphovirus, phiCDKH01, was obtained from a clinical isolate of Clostridioides difficile. The phage genome is a 45,089-bp linear double-stranded DNA molecule with an average G+C content of 28.7%. It shows low similarity to known phage genomes, except for phiCD24-1. Genomic and phylogenetic analysis revealed that phiCDKH01 is a newly discovered phage. Sixty-six putative ORFs were predicted in the genome, 37 of which code for proteins with predicted functions. The phiCDKH01 prophage was localized in the host genome. The results of this study increase our knowledge about the genetic diversity of tailed phages.


Subject(s)
Clostridioides difficile/virology , Siphoviridae/classification , Whole Genome Sequencing/methods , Base Composition , Genome Size , Genome, Viral , Open Reading Frames , Phylogeny , Prophages/classification , Prophages/genetics , Prophages/isolation & purification , Siphoviridae/genetics , Siphoviridae/isolation & purification
6.
PLoS One ; 14(8): e0220636, 2019.
Article in English | MEDLINE | ID: mdl-31390383

ABSTRACT

BACKGROUND: Helicobacter pylori colonizes the human gastric mucosa, causing chronic inflammation, peptic ulcers and gastric cancer. A cascade of harmful processes results from the interaction of these bacteria with the gastric epithelium. AIM: To investigate these processes in terms of upregulation of oxidative stress and cell apoptosis and downregulation of the pro-regenerative activity of cells. METHODS: We employed an in vivo guinea pig model at 7 or 28 days postinoculation with H. pylori, corresponding to an acute or chronic stage of infection, respectively, and an in vitro model of guinea pig primary gastric epithelial cells and fibroblasts treated with bacterial components: glycine acid extract (GE), urease subunit A (UreA), cytotoxin-associated gene A protein (CagA) and lipopolysaccharide (LPS). Cells were evaluated for metabolic activity (MTT reduction), myeloperoxidase (MPO) and metalloproteinase (MMP-9) secretion, lipid peroxidation (4-hydroxynonenal (4HNE)), migration (wound healing), proliferation (Ki-67 antigen) and cell apoptosis (TUNEL assay; Bcl-xL, Bax, Bcl-2 expression; caspase 3 cleavage). RESULTS: Significant infiltration of the gastric mucosa by inflammatory cells in vivo in response to H. pylori was accompanied by oxidative stress and cell apoptosis, which were more intense 7 than 28 days after inoculation. The increase in cell proliferation was more intense in chronic than acute infection. H. pylori components GE, CagA, UreA, and LPS upregulated oxidative stress and apoptosis. Only H. pylori LPS inhibited cell migration and proliferation, which was accompanied by the upregulation of MMP-9. CONCLUSIONS: H. pylori infection induces cell apoptosis in conjunction with increased oxidative stress. Elevated apoptosis protects against deleterious inflammation and neoplasia; however, it reduces cell integrity. Upregulation of cell migration and proliferation in response to injury in the milieu of GE, CagA or UreA facilitates tissue regeneration but increases the risk of neoplasia. By comparison, downregulation of cell regeneration by H. pylori LPS may promote chronic inflammation.


Subject(s)
Apoptosis , Cell Proliferation , Epithelial Cells/pathology , Fibroblasts/pathology , Gastric Mucosa/pathology , Helicobacter Infections/pathology , Helicobacter pylori/pathogenicity , Animals , Cell Movement , Epithelial Cells/microbiology , Fibroblasts/microbiology , Gastric Mucosa/microbiology , Guinea Pigs , Helicobacter Infections/complications , Humans , Inflammation , Neoplasms/etiology , Oxidative Stress
7.
J Biomed Sci ; 26(1): 23, 2019 Mar 06.
Article in English | MEDLINE | ID: mdl-30841890

ABSTRACT

BACKGROUND: Helicobacter pylori bacteria colonize human gastric mucosa, cause chronic inflammation, peptic ulcers and gastric cancer. Colonization is mediated by H. pylori adhesins, which preferentially bind mucin 5 (MUC5AC) and Lewis (Le) determinants. The aim of this study was to evaluate the influence of H. pylori and their components on MUC5AC production and deposition of LeX/LeY in gastric epithelial cells in relation to bacterial adhesion using Caviae porcellus primary gastric epithelial cells and an in vivo model of experimental H. pylori infection in these animals. METHODS: MUCA5C and LeX/LeY were induced in vitro by live H. pylori reference strain CCUG 17874 (2 × 107 CFU/ml), H. pylori glycine acid extract (GE), 10 µg/ml; cytotoxin associated gene A (CagA) protein, 1 µl/ml; UreA urease subunit, 5 µg/ml; lipopolysaccharide (LPS) 25 ng/ml and imaged by fluorescence microscopy after anti-MUC5AC or anti-LeX/LeY FITC antibody staining. Bacterial adhesion was imaged by using anti-H. pylori FITC antibodies. The animals were inoculated per os with H. pylori (3 times in 2 days intervals, 1 × 1010 CFU/ml). After 7 or 28 days an infection and inflammation were assessed by histological, serological and molecular methods. Gastric tissue sections of infected and control animals were screend for MUCA5C and LeX, and H. pylori adhesion as above. RESULTS: MUC5AC production and deposition of Lewis determinants, especially LeX were upregulated in the milieu of live H. pylori as well as GE, CagA, UreA or LPS in vitro and in vivo during infection, more effectively in the acute (7 days) than in the chronic (28 days) phase of infection. This was related to enhanced adhesion of H. pylori, which was abrogated by anti-MUC5AC and anti-LeX or anti-LeY antibody treatment. CONCLUSIONS: Modulation of MUCA5C production and LeX/LeY deposition in the gastric mucosa by H. pylori can significantly increase gastric tissue colonization during H. pylori infection.


Subject(s)
Helicobacter Infections/immunology , Helicobacter pylori/physiology , Lewis Blood Group Antigens/immunology , Lewis X Antigen/immunology , Mucin 5AC/genetics , Stomach Diseases/immunology , Animals , Epithelial Cells/immunology , Epithelial Cells/metabolism , Epithelial Cells/microbiology , Guinea Pigs , Helicobacter Infections/microbiology , Male , Mucin 5AC/metabolism , Stomach , Stomach Diseases/microbiology , Up-Regulation
8.
Mol Biotechnol ; 60(11): 810-819, 2018 Nov.
Article in English | MEDLINE | ID: mdl-30178298

ABSTRACT

Mucosal immunizations are convenient ways of vaccination, which do not require any trained personnel for administration. One of the major challenges for developing an effective mucosal vaccine is finding appropriate adjuvant. Bacillus subtilis endospores have been shown to help solving these obstacles while serving as a platform for presentation of both, antigens and adjuvants. In this study, we have successfully designed and constructed recombinant spores displaying an antigen/adjuvant chimeric protein. We have used a fragment of Clostridium difficile flagellar cap FliD protein as antigen and VQGEESNDK peptide, a fragment of human IL-1ß, as adjuvant. Recombinant spores presenting FliD were able to elicit immune response in orally immunized mice which could be evaluated by detection of FliD-specific IgA antibodies in feces of immunized animals. Moreover, the presence of IL-1ß fragment significantly changed characteristics of elicited immune response. Obtained results show that recombinant spores presenting an antigen/adjuvant chimeric protein exhibit both properties in mucosal immunization of mice. Moreover, IL-1ß fragment could serve as valuable adjuvant in B. subtilis spore-based mucosal vaccines.


Subject(s)
Adjuvants, Immunologic/chemistry , Bacillus subtilis/metabolism , Bacterial Proteins/immunology , Interleukin-1beta/chemistry , Recombinant Proteins/administration & dosage , Spores, Bacterial/metabolism , Administration, Mucosal , Animals , Bacillus subtilis/genetics , Bacterial Proteins/genetics , Clostridioides difficile/genetics , Clostridioides difficile/immunology , Clostridioides difficile/metabolism , Feces/chemistry , Humans , Immunoglobulin A/metabolism , Mice , Mice, Inbred BALB C , Recombinant Proteins/immunology , Recombinant Proteins/metabolism , Spores, Bacterial/genetics , Vaccination
9.
PLoS One ; 13(6): e0198561, 2018.
Article in English | MEDLINE | ID: mdl-29856851

ABSTRACT

Bacillus subtilis, as a model spore-forming Gram-positive bacterium, has been extensively used for spore germination research. Within this field, nutrient-dependent germination with specific germinant receptors (GerA, responding to L-alanine or L-valine; GerB and GerK, acting together to start spore germination process in response to AGFK) has been the most studied. There are three different variants of the GerAA subunit (299T/302S, 299A/302P, 299A/302S) of the GerA germination receptor present in B. subtilis subs. subtilis laboratory strains. According to our research, the 299A/302P one, unlike the others, interferes with the spore's ability to germinate in L-alanine as assessed by the measurement of DPA release upon stimulation with the germinant. Multiple genetic manipulations described in this work followed by spore germination tests, together with secondary structure predictions led us to the following conclusions. First, position 302 of GerAA protein is crucial in terms of GerA germination receptor functionality; a proline residue at this position renders the GerA receptor non-functional, most probably due to a change in the protein secondary structure. Second, the 302P GerAA variant has most probably an impaired affinity to other components of GerA receptor. Together, these may explain the loss of GerA receptor's function. Analysis of the GerAA protein should get us closer to understanding the mechanism of GerA receptor function.


Subject(s)
Bacillus subtilis/physiology , Bacterial Proteins/genetics , Membrane Proteins/genetics , Spores, Bacterial/genetics , Alanine/genetics , Alleles
10.
Microb Cell Fact ; 16(1): 151, 2017 Sep 12.
Article in English | MEDLINE | ID: mdl-28899372

ABSTRACT

BACKGROUND: Bacillus subtilis spores can be used for presentation of heterologous proteins. Two main approaches have been developed, the recombinant one, requiring modification of bacterial genome to express a protein of interest as a fusion with spore-coat protein, and non-recombinant, based on the adsorption of a heterologous protein onto the spore. So far only single proteins have been displayed on the spore surface. RESULTS: We have used a combined approach to adsorb and display FliD protein of Clostridium difficile on the surface of recombinant IL-2-presenting spores. Such spores presented FliD protein with efficiency comparable to FliD-adsorbed spores produced by wild-type 168 strain and elicited FliD-specific immune response in intranasally immunized mice. CONCLUSIONS: Our results indicate that such dual display technology may be useful in creation of spores simultaneously presenting adjuvant and antigen molecules. Regarding the characteristics of elicited immune response it seems plausible that such recombinant IL-2-presenting spores with adsorbed FliD protein might be an interesting candidate for vaccine against infections with Clostridium difficile.


Subject(s)
Adjuvants, Immunologic , Antigens/metabolism , Bacillus subtilis/genetics , Bacterial Proteins/immunology , Cell Surface Display Techniques , Clostridioides difficile/immunology , Interleukin-2/metabolism , Spores, Bacterial/genetics , Adsorption , Animals , Antibodies, Bacterial/blood , Antigens/genetics , Antigens/immunology , Bacillus subtilis/metabolism , Bacterial Proteins/genetics , Clostridioides difficile/genetics , Immunization , Interleukin-2/genetics , Interleukin-2/immunology , Mice , Recombinant Fusion Proteins/immunology , Recombinant Fusion Proteins/metabolism , Spores, Bacterial/immunology , Spores, Bacterial/metabolism
11.
Acta Biochim Pol ; 64(2): 239-244, 2017.
Article in English | MEDLINE | ID: mdl-28399189

ABSTRACT

The technology of display of heterologous proteins on the surface of Bacillus subtilis spores enables use of these structures as carriers of antigens for mucosal vaccination. Currently, there are no technical possibilities to predict whether a designed fusion will be efficiently displayed on the spore surface and how such recombinant spores will interact with cells of the immune system. In this study, we compared four variants of B. subtilis spores presenting a fragment of a FliD protein from Clostridium difficile in fusion with CotB, CotC, CotG or CotZ spore coat proteins. We show that these spores promote their own phagocytosis and activate both, the J774 macrophages and JAWSII dendritic cells of murine cell lines. Moreover, we used these spores for mucosal immunization of mice. We conclude that the observed effects vary with the type of displayed FliD-spore coat protein fusion and seem to be mostly independent of its abundance and localization in the spore coat structure.


Subject(s)
Bacterial Proteins/genetics , Recombinant Fusion Proteins/genetics , Spores, Bacterial/genetics , Animals , Antigens/genetics , Antigens/immunology , Bacillus subtilis/genetics , Bacillus subtilis/immunology , Bacillus subtilis/pathogenicity , Bacterial Proteins/immunology , Clostridioides difficile/genetics , Clostridioides difficile/immunology , Dendritic Cells/immunology , Dendritic Cells/metabolism , Macrophages/immunology , Mice , Mucous Membrane/immunology , Phagocytosis/genetics , Phagocytosis/immunology , Recombinant Fusion Proteins/immunology , Spores, Bacterial/immunology , Spores, Bacterial/pathogenicity , Vaccination
12.
PLoS One ; 11(11): e0167225, 2016.
Article in English | MEDLINE | ID: mdl-27902762

ABSTRACT

Effective vaccination against influenza virus infection is a serious problem mainly due to antigenic variability of the virus. Among many of investigated antigens, the extracellular domain of the M2 protein (M2e) features high homology in all strains of influenza A viruses and antibodies against M2e and is protective in animal models; this makes it a potential candidate for generation of a universal influenza vaccine. However, due to the low immunogenicity of the M2e, formulation of a vaccine based on this antigen requires some modification to induce effective immune responses. In this work we evaluated the possible use of Bacillus subtilis spores as a carrier of the Influenza A M2e antigen in mucosal vaccination. A tandem repeat of 4 consensus sequences coding for human-avian-swine-human M2e (M2eH-A-S-H) peptide was fused to spore coat proteins and stably exposed on the spore surface, as demonstrated by the immunostaining of intact, recombinant spores. Oral immunization of mice with recombinant endospores carrying M2eH-A-S-H elicited specific antibody production without the addition of adjuvants. Bacillus subtilis endospores can serve as influenza antigen carriers. Recombinant spores constructed in this work showed low immunogenicity although were able to induce antibody production. The System of influenza antigen administration presented in this work is attractive mainly due to the omitting time-consuming and cost-intensive immunogen production and purification. Therefore modification should be made to increase the immunogenicity of the presented system.


Subject(s)
Antigen Presentation , Antigens, Viral/immunology , Bacillus subtilis/genetics , DNA, Recombinant/genetics , Influenza A virus/immunology , Spores, Bacterial/genetics , Animals , Chromosomes/genetics , Gene Fusion , Humans , Mice , Mice, Inbred BALB C
13.
World J Gastroenterol ; 22(33): 7536-58, 2016 Sep 07.
Article in English | MEDLINE | ID: mdl-27672275

ABSTRACT

AIM: To determine the impact of selected well defined Helicobacter pylori (H. pylori) antigens on gastric barrier cell turnover. METHODS: In this study, using two cellular models of gastric epithelial cells and fibroblasts, we have focused on exploring the effects of well defined H. pylori soluble components such as glycine acid extract antigenic complex (GE), subunit A of urease (UreA), cytotoxin associated gene A protein (CagA) and lipopolysaccharide (LPS) on cell turnover by comparing the wound healing capacity of the cells in terms of their proliferative and metabolic activity as well as cell cycle distribution. Toxic effects of H. pylori components have been assessed in an association with damage to cell nuclei and inhibition of signal transducer and activator of transcription 3 (STAT3) phosphorylation. RESULTS: We showed that H. pylori GE, CagA and UreA promoted regeneration of epithelial cells and fibroblasts, which is necessary for effective tissue healing. However, in vivo increased proliferative activity of these cells may constitute an increased risk of gastric neoplasia. In contrast, H. pylori LPS showed a dose-dependent influence on the process of wound healing. At a low concentration (1 ng/mL) H. pylori LPS accelerated of healing epithelial cells, which was linked to significantly enhanced cell proliferation and MTT reduction as well as lack of alterations in cell cycle and downregulation of epidermal growth factor (EGF) production as well as cell nuclei destruction. By comparison, H. pylori LPS at a high concentration (25 ng/mL) inhibited the process of wound repair, which was related to diminished proliferative activity of the cells, cell cycle arrest, destruction of cell nuclei and downregulation of the EGF/STAT3 signalling pathway. CONCLUSION: In vivo H. pylori LPS driven effects might lead to the maintenance of chronic inflammatory response and pathological disorders on the level of the gastric mucosal barrier.


Subject(s)
Gastric Mucosa/pathology , Helicobacter Infections/physiopathology , Helicobacter pylori , Stomach Neoplasms/pathology , Stomach/pathology , Animals , Antigens, Bacterial/immunology , Antigens, Bacterial/metabolism , Bacterial Proteins/metabolism , Cell Cycle , Cell Division , Cell Line, Tumor , Cell Movement , Cell Proliferation , Cell Survival , Cells, Cultured , Epithelial Cells/metabolism , Gastric Mucosa/microbiology , Glycine/metabolism , Guinea Pigs , Helicobacter Infections/metabolism , Helicobacter Infections/microbiology , Humans , Lipopolysaccharides , Signal Transduction , Stomach/microbiology , Stomach Neoplasms/microbiology , Urease/metabolism , Wound Healing
14.
Front Microbiol ; 7: 782, 2016.
Article in English | MEDLINE | ID: mdl-27303376

ABSTRACT

Dickeya solani and Pectobacterium carotovorum subsp. brasiliense are recently established species of bacterial plant pathogens causing black leg and soft rot of many vegetables and ornamental plants. Pseudomonas sp. strain P482 inhibits the growth of these pathogens, a desired trait considering the limited measures to combat these diseases. In this study, we determined the genetic background of the antibacterial activity of P482, and established the phylogenetic position of this strain. Pseudomonas sp. P482 was classified as Pseudomonas donghuensis. Genome mining revealed that the P482 genome does not contain genes determining the synthesis of known antimicrobials. However, the ClusterFinder algorithm, designed to detect atypical or novel classes of secondary metabolite gene clusters, predicted 18 such clusters in the genome. Screening of a Tn5 mutant library yielded an antimicrobial negative transposon mutant. The transposon insertion was located in a gene encoding an HpcH/HpaI aldolase/citrate lyase family protein. This gene is located in a hypothetical cluster predicted by the ClusterFinder, together with the downstream homologs of four nfs genes, that confer production of a non-fluorescent siderophore by P. donghuensis HYS(T). Site-directed inactivation of the HpcH/HpaI aldolase gene, the adjacent short chain dehydrogenase gene, as well as a homolog of an essential nfs cluster gene, all abolished the antimicrobial activity of the P482, suggesting their involvement in a common biosynthesis pathway. However, none of the mutants showed a decreased siderophore yield, neither was the antimicrobial activity of the wild type P482 compromised by high iron bioavailability. A genomic region comprising the nfs cluster and three upstream genes is involved in the antibacterial activity of P. donghuensis P482 against D. solani and P. carotovorum subsp. brasiliense. The genes studied are unique to the two known P. donghuensis strains. This study illustrates that mining of microbial genomes is a powerful approach for predictingthe presence of novel secondary-metabolite encoding genes especially when coupled with transposon mutagenesis.

15.
Acta Biochim Pol ; 63(1): 145-152, 2016.
Article in English | MEDLINE | ID: mdl-26619253

ABSTRACT

Colonization of gastric tissue in humans by H. pylori Gram-negative bacteria initiates gastric and duodenal ulcers and even gastric cancers. Infections promote inflammation and damage to gastric epithelium which might be followed by the impairment of its barrier function. The role of H. pylori components in these processes has not been specified. H. pylori cytotoxicity may potentially increase in the milieu of anti-inflammatory drugs including acetylsalicylic acid (ASA). The lipid transport-associated molecule such as low density lipoprotein (LDL), which is a classic risk factor of coronary heart disease (CHD) and 7-ketocholesterol (7-kCh) a product of cholesterol oxidation, which may occur during the oxidative stress in LDL could also be considered as pro-inflammatory. The aim of this study was to evaluate the cytotoxicity of H. pylori antigens, ASA, LDL and 7-kCh towards Kato III gastric epithelial cells, on the basis of the cell ability to reduce tetrazolium salt (MTT) and morphology of cell nuclei assessed by 4',6-diamidino-2-phenylindole (DAPI) staining. Kato III cells were stimulated for 24 h, at 37°C and 5% CO2, with H. pylori antigens: cytotoxin associated gene A (CagA) protein, the urease A subunit (UreA), lipopolysaccharide (LPS) and ASA, LDL or 7-kCh. H. pylori LPS, ASA, LDL and 7-kCh, but not H. pylori glycine acid extract (GE), demonstrated cytotoxicity against Kato III cells, which was related to a diminished percentage of MTT reducing cells and to an increased cell population with the signs of DNA damage. The results suggest that damage to gastric epithelial cells can be induced independently by H. pylori antigens, ASA and endogenous lipid transport-associated molecules. During H. pylori infection in vivo, especially in CHD patients, synergistic or antagonistic interactions between these factors might possibly influence the disease course. Further study is necessary to explain these potential effects.


Subject(s)
Antigens, Bacterial/immunology , Aspirin/pharmacology , Cholesterol, LDL/physiology , Gastric Mucosa/pathology , Helicobacter pylori/immunology , Ketocholesterols/physiology , Gastric Mucosa/drug effects , Gastric Mucosa/immunology , Humans , In Vitro Techniques
16.
Acta Biochim Pol ; 62(4): 641-50, 2015.
Article in English | MEDLINE | ID: mdl-26523406

ABSTRACT

The role of Helicobacter pylori (H. pylori) antigens in driving a specific immune response against the bacteria causing gastroduodenal disorders is poorly understood. Using a guinea pig model mimicking the natural history of H. pylori infection, we evaluated the effectiveness of immature and mature macrophages in promoting the blastogenesis of splenocytes from H. pylori infected and uninfected animals, in response to H. pylori antigens: glycine acid extract (GE), cytotoxin associated gene A protein (CagA), urease A (UreA) and lipopolysaccharide (LPS). Lymphocyte expansion was assessed in 72 h cell cultures, containing: immature or mature macrophages derived from bone marrow monocytes, unstimulated or stimulated with H. pylori antigens for 2 h. The proliferation was expressed as a ratio of [(3)H]-thymidine incorporation into DNA of antigen-stimulated to unstimulated cells and the DNA damage was determined by DAPI cell staining. TGF-ß and IFN-γ were assessed immunoenzymatically in cell culture supernatants. Lymphocytes of control and H. pylori-infected animals proliferated intensively in response to phytohaemagglutinin (PHA) and in co-cultures with immature or mature macrophages treated with CagA or UreA (significantly) and GE (slightly) exluding the cultures containing H. pylori or E. coli LPS. This lymphocyte growth inhibition was related to DNA damage of monocytic cells in response to H. pylori or E. coli LPS and secretion of regulatory TGF-ß, but not proinflammatory IFN-γ. Impaired homeostasis of monocytic cell function related to DNA damage and TGF-ß release, in response to H. pylori LPS may lead to the suppression of adaptive immune response against the bacteria and development of chronic infection.


Subject(s)
Antigen-Presenting Cells/immunology , Antigens, Bacterial/immunology , Helicobacter pylori/immunology , Monocytes/immunology , Animals , Coculture Techniques , DNA Damage , Interferon-gamma/metabolism , Male , Mice , Transforming Growth Factor beta/metabolism
17.
PLoS One ; 10(10): e0140377, 2015.
Article in English | MEDLINE | ID: mdl-26473368

ABSTRACT

Skin represents the largest organ of the human body and plays a crucial role in its protection from the negative impact of the outside environment, maintains its homeostasis, enables sensory interaction and thermoregulation. The traumatized skin tissue undergoes several phenotype switches due to progressive reoxygenation and release of cytokine and growth factors, that activate mechanisms of reparative processes. However, in case of wounds colonized with pathogenic microflora natural regenerative mechanisms become substantially impaired, that could lead to chronic inflammatory states with non-healing skin lesions. Herein, we present the initial results of our studies aimed at the design of bifunctional peptide-based compounds. The chemical approach, that was utilized in this work, was based on the conjugation of antimicrobial peptides with the peptides, that have potential pro-proliferative and/or cytoprotective activity towards human keratinocytes and fibroblasts, in order to obtain antimicrobials with reduced cytotoxicity or compounds that maintain both activities, i.e. inhibit bacterial or fungi growth and activate cell proliferation/migration in in vitro tests. As a result, we obtained a group of peptide conjugates that effectively inhibited the growth of selected bacterial and fungi strains and were able to stimulate proliferation and migration of keratinocytes and fibroblasts under their effective microbicidal concentrations.


Subject(s)
Antimicrobial Cationic Peptides , Bacteria/growth & development , Candida/growth & development , Cell Proliferation/drug effects , Fibroblasts/metabolism , Skin/metabolism , Aged , Antimicrobial Cationic Peptides/chemical synthesis , Antimicrobial Cationic Peptides/chemistry , Antimicrobial Cationic Peptides/pharmacology , Body Temperature Regulation/drug effects , Cytoprotection/drug effects , Drug Evaluation, Preclinical , Female , Fibroblasts/microbiology , Humans , Male , Middle Aged , Skin/microbiology
18.
Mol Biotechnol ; 57(8): 685-91, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25779639

ABSTRACT

Current progress in research on vaccines against Helicobacter pylori emphasizes the significance of eliciting the Th1/Th17-polarized immune response. Such polarization can be achieved by selection of appropriate antigen and adjuvant. In this study, we wanted to check the polarization of the immune response elicited by UreB protein of Helicobacter acinonychis delivered by recombinant Bacillus subtilis spores upon oral immunization. B. subtilis spores presenting fragment of UreB protein and able to express entire UreB in vegetative cells after germination were orally administered to mice along with aluminum hydroxide or recombinant spores presenting IL-2 as an adjuvant. The pattern of cytokines secreted by sensitized splenocytes assessed by the cytometric bead array clearly indicated polarization of the immune response toward both Th1 and Th17 in mice immunized with the use of above-mentioned adjuvants. Obtained result is promising regarding the usage of recombinant spores in formulations of vaccines against H. pylori and line up with the current state of research emphasizing the key role of appropriate adjuvants.


Subject(s)
Bacillus subtilis/immunology , Bacterial Vaccines/immunology , Helicobacter Infections/immunology , Helicobacter pylori/immunology , Th1 Cells/immunology , Th17 Cells/immunology , Animals , Bacillus subtilis/genetics , Bacterial Vaccines/genetics , Bacterial Vaccines/pharmacology , Female , Helicobacter Infections/genetics , Helicobacter Infections/prevention & control , Helicobacter pylori/genetics , Immunity, Cellular/drug effects , Mice , Mice, Inbred BALB C , Spores, Bacterial/genetics , Spores, Bacterial/immunology , Vaccination
19.
PLoS One ; 9(4): e95187, 2014.
Article in English | MEDLINE | ID: mdl-24743850

ABSTRACT

The endospores of Bacillus subtilis are now widely used as a platform for presentation of heterologous proteins and due to their safety record and high resistance to harsh environmental conditions can be considered as potential vehicles for oral vaccination. In this research we show that recombinant B. subtilis spores presenting a fragment of the Helicobacter acinonychis UreB protein and expressing the ureB gene under vegetative promoter elicit a strong cellular immune response in orally immunized mice when co-administered with spores presenting IL-2. We show for the first time the successful application of two types of recombinant spores, one carrying an antigen and the other an adjuvant, in a single oral immunization.


Subject(s)
Adjuvants, Immunologic , Bacillus subtilis/physiology , Bacterial Vaccines/immunology , Helicobacter Infections/prevention & control , Helicobacter pylori/immunology , Interleukin-2/immunology , Vaccination , Animals , Bacterial Vaccines/genetics , Bacterial Vaccines/microbiology , Female , Helicobacter Infections/genetics , Helicobacter Infections/immunology , Helicobacter Infections/metabolism , Interleukin-2/biosynthesis , Interleukin-2/genetics , Mice , Mice, Inbred BALB C , Spores, Bacterial/genetics , Spores, Bacterial/immunology , Spores, Bacterial/metabolism
20.
Microb Cell Fact ; 13(1): 30, 2014 Feb 24.
Article in English | MEDLINE | ID: mdl-24568122

ABSTRACT

BACKGROUND: Bacterial spores have been utilized as platforms for protein display. The best studied display systems are based on Bacillus subtilis spores in which several coat proteins have successfully been used as anchors for heterologous protein. Increasing knowledge about spore coat structure enables selection of new anchor proteins such as CotZ and CgeA. Here we describe a system of vectors for display of proteins on the surface of B. subtilis spores. RESULTS: We have designed and constructed a set of 16 vectors for ectopic integration which can be used for spore surface display of heterologous proteins. There is a selection of five coat proteins: CotB, CotC, CotG, CotZ and CgeA which can be used for construction of fusions. Three of these (CotB, CotC and CotG) enable obtaining N-terminal and C-terminal fusions and other two (CotZ and CgeA) are designed to produce C-terminal fusions only. All the vectors enable introduction of an additional peptide linker between anchor and displayed protein to enhance surface display. As a selection marker trophic genes are used. Additionally we describe an example application of presented vector system to display CagA protein of Helicobacter pylori in fusion with CgeA spore coat protein. CONCLUSIONS: Described system of vectors is a versatile tool for display of heterologous proteins on the surface of B. subtilis spores. Such recombinant spores can be further used as for example biocatalysts or antigen-carriers in vaccine formulations. The lack of antibiotic resistance genes in the system makes such spores an interesting option for applications in which a possible release to the environment can occur.


Subject(s)
Bacillus subtilis/physiology , Bacterial Proteins/metabolism , Genetic Vectors/metabolism , Antigens, Bacterial/chemistry , Antigens, Bacterial/genetics , Antigens, Bacterial/metabolism , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Base Sequence , Helicobacter pylori/metabolism , Molecular Sequence Data , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Spores, Bacterial/metabolism
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