Physico-Chemical and Metagenomic Profile Analyses of Animal Manures Routinely Used as Inocula in Anaerobic Digestion for Biogas Production.

Anaerobic digestion (AD) of organic waste is considered a sustainable solution to energy shortage and waste management challenges. The process is facilitated by complex communities of micro-organisms, yet most wastes do not have these and thus need microbial inoculation using animal manures to initiate the process. However, the degradation efficiency and methane yield achieved in using different inocula vary due to their different microbial diversities. This study used metagenomics tools to compare the autochthonous microbial composition of cow, pig, chicken, and horse manures commonly used for biogas production. Cows exhibited the highest carbon utilisation (>30%) and showed a carbon to nitrogen ratio (C/N) favourable for microbial growth. Pigs showed the least nitrogen utilisation (<3%) which explains their low C/N whilst horses showed the highest nitrogen utilisation (>40%), which explains its high C/N above the optimal range of 20−30 for efficient AD. Manures from animals with similar gastrointestinal tract (GIT) physiologies were observed to largely harbour similar microbial communities. Conversely, some samples from animals with different GITs also shared common microbial communities plausibly because of similar diets and rearing conditions. Insights from this study will lay a foundation upon which in-depth studies of AD metabolic pathways and strategies to boost methane production through efficient catalysis can be derived.

Correlations Between Root Metabolomics and Bacterial Community Structures in the Phragmites australis Under Acid Mine Drainage-Polluted Wetland Ecosystem.

Despite root microecology playing critical role in plant growth and fidelity, relatively few studies have focused on the link between the microbial communities and root metabolome in the aquatic macrophytes under heavy metal (HM) pollution. Using high-throughput metagenomic sequencing, targeted metabolomics and community-level physiological profile analyses, we investigated the symbiotic associations between Phragmites australis with rhizospheric bacterial communities under differing acid mine drainage (AMD) pollution. Results indicated that AMD pollution and root localization significantly affected root metabolome profiles. Higher accumulation of adenosine monophosphate, inosine, methionine, carnitine and dimethylglycine were observed in the rhizosphere under AMD than non-AMD habitat. Overall, the bacterial diversity and richness, and functional (metabolic) diversity were lower under high-AMD pollution. While non-AMD site was enriched with members of phylum Firmicutes, Proteobacteria were the most abundant taxa in the rhizosphere and endosphere under AMD-polluted sites. Further, plant growth promoting rhizobacteria (Rhizobium, Delftia, Bradyrhizobium, and Mesorhizobium) and metal-tolerant bacteria (Bacillus, Arthrobacter, Massilia and Methylocystis) were most abundant in AMD-polluted than non-AMD habitat. Finally, pH, TDS (total dissolved solids), Cu, Cr, Fe, and Zn content were the key environmental factors that strongly contributed to the spatial perturbation of rhizospheric metabolites, proteobacterial and acidobacterial taxa. Overall, the study linked the differential endospheric and rhizospheric bacterial community and metabolite profiles in P. australis under AMD environment and provided insights into HM adaptability and phytoremediation potential.

Investigating the chromium status, heavy metal contamination, and ecological risk assessment via tannery waste disposal in sub-Saharan Africa (Kenya and South Africa).

To mitigate the negative environmental and public health concerns associated with increased industrial discharges amid the rapid industrial growth, sub-Saharan African countries have instituted several environmental regulations and policies. However, a paradox of good environmental policies but inadequate enforcement exists in most of these countries, with information on the pollution level unknown due to poor monitoring resources. In this study, potentially toxic heavy metal contamination and physicochemical characteristics in effluents and dumpsite soils of two tanneries in Kenya (DB) and South Africa (BO) were evaluated during the dry and rainy season of 2018. Pollution levels and ecological risk in the dumpsite soils were assessed by adopting geoaccumulation index (Igeo), contamination factor (CF), pollution load index (PLI), and ecological risk index (PRI). The results showed that the mean final effluent concentration for total dissolved solids (TDS), chemical oxygen demand (COD), and Cr, Cu, Fe, Ni, Zn, and Cd for BO (2127, 890, 1.82, 1.38, 1.96, 0.60, 1.21, and 1.16, respectively) and DB tanneries (8157, 1369, 7.90, 0.69, 1.05, 0.60, 1.72 mg/L, respectively) were above the limits of emission guidelines. The mean Cr and Cr(VI) concentrations in tannery dumpsite soils (204.9 ± 29.1 and 0.31 ± 0.01 and 943 ± 29.8 and 0.4 ± 0.07 mg/kg for BO and DB, respectively) and Fe (2498 ± 62 mg/kg in DB) exceeded acceptable thresholds of the World Health Organization (WHO), Food and Agriculture Organization (FAO), and local background levels. A positive strong correlation was observed between Cr and organic matter, OM (r > 0.7, p < 0.001), electrical conductivity, EC (r = 0.99, p < 0.05), and As (r = 0.62; p < 0.05), suggesting a common anthropogenic point source. The mean PLI values of 5.3 and 1.6 for DB and BO dumpsites indicated significant pollution of the soils with heavy metals, specifically Cr (Igeo = 18 and 2.4 for DB and BO, respectively). Similarly, PRI values of 174.8 and 57.4 indicated a moderate and low potential ecological risk for DB and BO tannery dumpsite, respectively, with several plants sampled within the two sites exhibiting elevated levels of Cr contamination. In summary, these results provide scientific insights on the need for both improved effluent management and treatment technologies of tannery wastes, coupled with the strengthening of continuous monitoring and enforcement for compliance of industrial discharges in sub-Saharan countries.

Investigating Industrial Effluent Impact on Municipal Wastewater Treatment Plant in Vaal, South Africa.

Industrial effluents with high concentrations of toxic heavy metals are of great concern because of their persistence and non-degradability. However, poor operation and maintenance of wastewater treatment infrastructure is a great concern in South Africa. In this study, physico-chemical parameters and heavy metals (HMs) concentration of wastewater from five different industries, Leeuwkuil wastewater treatment plant (WWTP) inflow and effluent, and Vaal River water samples were monitored between January and September 2017, to investigate the correlation between heavy metal pollution and the location of industries and ascertain the effectiveness of the municipal WWTP. Physico-chemical variables such as pH, biological oxygen demand (BOD), dissolved oxygen (DO), chemical oxygen demand (COD), total dissolved solids (TDS) and electrical conductivity (EC) exhibited both temporal and spatial variations with the values significantly higher in the industrial samples. Inductively coupled plasma optical emission spectrometry (ICP-OES) results also showed that aluminium (Al), copper (Cu), lead (Pb) and zinc (Zn) were significantly higher in industrial effluents (p < 0.05), with only Zn and Al exhibiting significant seasonal variability. Statistical correlation analysis revealed a poor correlation between physicochemical parameters and the HMs compositional quality of wastewater. However, toxic HMs (Zn, Cu and Pb) concentrations in treated wastewater from WWTP were above the permissible limits. Although the WWTP was effective in maintaining most of the wastewater parameters within South African Green drop Standards, the higher Cu, Zn, Pb and COD in its final effluent is a concern in terms of Vaal river health and biological diversity. Therefore, we recommend continuous monitoring and maintenance of the WWTPs infrastructure in the study area.

Distribution, Interaction and Functional Profiles of Epiphytic Bacterial Communities from the Rocky Intertidal Seaweeds, South Africa.

Interrelations between epiphytic bacteria and macroalgae are multifaceted and complicated, though little is known about the community structure, interaction and functions of those epiphytic bacteria. This study comprehensively characterized the epiphytic bacterial communities associated with eight different common seaweeds collected from a rocky intertidal zone on the Indian Ocean at Cape Vidal, South Africa. High-throughput sequencing analyses indicated that seaweed-associated bacterial communities were dominated by the phyla Proteobacteria, Bacteroidetes, Firmicutes, Cyanobacteria, Planctomycetes, Actinobacteria and Verrucomicrobia. Energy-dispersive X-ray (EDX) analysis showed the presence of elemental composition in the surface of examined seaweeds, in varying concentrations. Cluster analysis showed that bacterial communities of brown seaweeds (SW2 and SW4) were closely resembled those of green seaweeds (SW1) and red seaweeds (SW7) while those of brown seaweeds formed a separate branch. Predicted functional capabilities of epiphytic bacteria using PICRUSt analysis revealed abundance of genes related to metabolic and biosynthetic activities. Further important identified functional interactions included genes for bacterial chemotaxis, which could be responsible for the observed association and network of elemental-microbes interaction. The study concludes that the diversity of epiphytic bacteria on seaweed surfaces is greatly influenced by algal organic exudates as well as elemental deposits on their surfaces, which triggers chemotaxis responses from epiphytic bacteria with the requisite genes to metabolise those substrates.