Revision and analysis of the chromosome variability in the speciose genus Akodon (Rodentia, Sigmodontinae), including new data from Argentina.

Rodentia has a high species number and chromosomal variability. The South American genus Akodon is one of the most speciose muroids, with more than 40 species included in several species groups. Here, we characterize cytogenetically specimens of Akodon from central-western Argentina. Subsequently, we reviewed and analyzed the cytogenetic data for this genus, build a phylogeny and mapped chromosome changes to interpret its evolution. Specimens of A. dolores from central-western Argentina have 2n=42-44/FNa=44 (46, 48) due to a Robertsonian rearrangement. Our data expand the distribution range known for this polymorphism and confirm its geographic structure. Other specimens had 2n=40/FNa=40, representing populations of A. oenos, A. polopi, and A. spegazzinii. All karyotypes have a low amount of heterochromatin, concentrated in centromeres and sex chromosomes, as in other rodents. The complement with 2n=40/FNa=40 is the most frequent in Akodon and is shared by most species in some groups. Chromosome numbers are very diverse. The FNa shows less variability; FNa=42 was recovered as ancestral, excluding A. mimus, which was connected at the base of the Akodon tree and has FNa=44. This indicates a complex chromosome evolution in Akodon, and suggests that reductions and increases in the 2n and FNa evolved independently in some lineages.

DNA barcodes highlight genetic diversity patterns in rodents from lowland desert and Andean areas in Argentina.

Rodents are an important component of South America fauna. Their high diversity has motivated researchers to continually review their taxonomy, genetic diversity, species limits, and phylogenetic relationships. Here, we applied DNA-barcodes for assessing the taxonomic and genetic diversity in the two major lineages of South American rodents: caviomorphs and sigmodontines. We analysed 335 COI barcodes in 34 morphologically determined species from 39 localities along central Andes and arid lands of Argentina. Neighbour-joining and maximum likelihood reconstruction provided clear separation between species. The Barcode Index number and Bayesian Poisson tree processes were used to confirm concordance between sequence clusters and species designations by taxonomy. We found deep divergence within the Phyllotis xanthopygus species complex, with distances up to 13.0% between geographically separated lineages. Minor divergences (3.30% and 2.52%) were found within Abrothrix hirta, and Tympanoctomys barrerae, respectively, with differentiation in their genetic lineages. Also, we documented geographically separated clusters for Akodon spegazzinii and A. oenos with up to 2.3% divergence, but clustering methods failed to distinguish them as different species. Sequence results show a clear barcode gap with a mean intraspecific divergence (0.56%) versus a minimum nearest-neighbour distance averaging (10.1%). Distances between congeneric species varied from 4.1 to 14%, with the exception of two related forms within Euneomys and the sister species Akodon spegazzinii and A. oenos. This study constitutes a substantial contribution to the global barcode reference library. It provides insights into the complex phylogeographic patterns and speciation scenarios in rodents, while highlighting areas that require in-depth taxonomic and integrative research.

Seroprevalence of leptospiral antibodies in rodents from riverside communities of Santa Fe, Argentina.

BACKGROUND: Leptospirosis is a zoonotic disease that can be transmitted by contact with the urine of infected mammals. Rodents play a mayor role in the transmission of leptospires to humans. The province of Santa Fe reports the greatest number of cases in Argentina. Yet, in this region, there are still knowledge gaps regarding the diversity of rodent species that may be hosts of pathogenic leptospires. The aims of this study were to evaluate the presence of leptospiral antibodies in rodents from three riverside communities of Santa Fe, and to identify factors associated with leptospiral infection. METHODOLOGY/PRINCIPAL FINDINGS: Each community was divided into three environmental settings based on the level of human disturbance, and sampled during two springs (Sep-Oct 2014 and 2015) and one autumn (Mar-Apr 2015). Serum samples of captured sigmodontine and murine rodents were tested for leptospiral antibodies by enzyme-linked immunosorbent assay (ELISA), and microagglutination test (MAT) was used to assess the infecting serovar in seropositive individuals. Factors influencing seropositivity were analyzed using logistic regression models. We caught 119 rodents, of which 101 serums were suitable for analysis. Most frequently trapped species were Scapteromys aquaticus, Akodon azarae and Oligoryzomys spp., with seroprevalences of 41.3%, 42.9% and 55% respectively. Seropositivity was higher in individuals with an average body condition score and in those that were sexually mature, but in the latter the differences were marginally significant. CONCLUSIONS/SIGNIFICANCE: Our results suggest that native rodents may be playing a role in the environmental circulation of pathogenic leptospires and provide relevant information for public health policies in the area.

Geographic variation in quantitative skull traits and systematic of southern populations of the leaf-eared mice of the Phyllotis xanthopygus complex (Cricetidae, Phyllotini) in southern South America.

The leaf-eared mice of the genus Phyllotis (Cricetidae, Phyllotini) encompasses at least 20 species of medium-sized Neotropical rodents mostly distributed throughout the Andean region. Its limits and contents were reviewed by several authors, based both on morphological and molecular data. However, no integrative approaches were conducted based on large samples of individuals with a wide geographical coverage. The purposes of this paper are: (i) to evaluate species limits; and (ii) to test the congruence between molecular and quantitative morphological evidences within the Phyllotis xanthopygus complex in southern South America. Our results questioned the specific status of P. bonariensis, a geographically isolated form that was either considered as a valid species or as a synonym of P. xanthopygus. Quantitative morphological (size and shape of the skull) and molecular data linked P. bonariensis with populations from central Argentina traditionally referred as P. xanthopygus vaccarum. Individuals belonging to populations from southern Argentina and Chile (P. x. xanthopygus) were remarkably homogeneous in their skull morphology, showing a subtle to non-existent differentiation from those of north-central and west-central Argentina referred to P. x. vaccarum. We found some incongruence between groups inferred from morphological (this work) and mitochondrial DNA results of previous studies. This is the case of the north-central and west-central populations, where morphological traits do not show the strong differentiation detected by molecular characters. Our results highlight the need for integrative taxonomic studies, not only to delimitate taxonomic units but also for a better and more comprehensive understanding of population variability and differentiation.

Evolution of the Largest Mammalian Genome.

The genome of the red vizcacha rat (Rodentia, Octodontidae, Tympanoctomys barrerae) is the largest of all mammals, and about double the size of their close relative, the mountain vizcacha rat Octomys mimax, even though the lineages that gave rise to these species diverged from each other only about 5 Ma. The mechanism for this rapid genome expansion is controversial, and hypothesized to be a consequence of whole genome duplication or accumulation of repetitive elements. To test these alternative but nonexclusive hypotheses, we gathered and evaluated evidence from whole transcriptome and whole genome sequences of T. barrerae and O. mimax. We recovered support for genome expansion due to accumulation of a diverse assemblage of repetitive elements, which represent about one half and one fifth of the genomes of T. barrerae and O. mimax, respectively, but we found no strong signal of whole genome duplication. In both species, repetitive sequences were rare in transcribed regions as compared with the rest of the genome, and mostly had no close match to annotated repetitive sequences from other rodents. These findings raise new questions about the genomic dynamics of these repetitive elements, their connection to widespread chromosomal fissions that occurred in the T. barrerae ancestor, and their fitness effects-including during the evolution of hypersaline dietary tolerance in T. barrerae.

Karyotypic variation in the Andean rodent Phyllotisxanthopygus (Waterhouse, 1837) (Rodentia, Cricetidae, Sigmodontinae).

Phyllotisxanthopygus (Waterhouse, 1837) is an Andean rodent endemic to South America. Despite its wide geographical distribution in Argentina, few individuals have been studied on the cytogenetic level and only through conventional staining. In this work, chromosome characterization of Argentine samples of this species was performed using solid staining, C-banding and base-specific fluorochromes. Twenty two specimens were analyzed, collected in the provinces of Jujuy, Catamarca, and the north and south of Mendoza. All studied specimens showed 2n=38, having mostly the bi-armed autosomes, metacentric or submetacentric. Fundamental Number varied between 70 and 72. These changes were due to the presence of chromosome heteromorphisms in individuals from southern Mendoza and Jujuy. C-banding revealed pericentromeric blocks of constitutive heterochromatin in most chromosomes. Acrocentric chromosomes involved in heteromorphisms showed high variation in the amount of heterochromatin within and among populations. Additionally, banding with fluorochromes (DAPI and chromomycin A3) revealed homologous localization of AT and GC rich regions among chromosomes of the different populations analyzed. Comparisons among heteromorphic pairs suggested, however, that the variation might be the result of complex chromosome rearrangements, involving possibly amplifications and/or deletions of heterochromatic segments. These results are in accordance with molecular studies that indicate genetic variability within and among the populations of this taxon.