ABSTRACT
Atmospheric nitrous oxide (N2O) is a potent greenhouse gas thought to be mainly derived from microbial metabolism as part of the denitrification pathway. Here we report that in unexplored peat soils of Central and South America, N2O production can be driven by abiotic reactions (≤98%) highly competitive to their enzymatic counterparts. Extracted soil iron positively correlated with in situ abiotic N2O production determined by isotopic tracers. Moreover, we found that microbial N2O reduction accompanied abiotic production, essentially closing a coupled abiotic-biotic N2O cycle. Anaerobic N2O consumption occurred ubiquitously (pH 6.4-3.7), with proportions of diverse clade II N2O reducers increasing with consumption rates. Our findings show that denitrification in tropical peat soils is not a purely biological process but rather a 'mosaic' of abiotic and biotic reduction reactions. We predict that hydrological and temperature fluctuations differentially affect abiotic and biotic drivers and further contribute to the high N2O flux variation in the region.
Subject(s)
Denitrification , Nitrous Oxide , Nitrous Oxide/analysis , Soil , Soil Microbiology , HydrologyABSTRACT
The isotopic composition of nitrous oxide (N2 O) provides useful information for evaluating N2 O sources and budgets. Due to the co-occurrence of multiple N2 O transformation pathways, it is, however, challenging to use isotopic information to quantify the contribution of distinct processes across variable spatiotemporal scales. Here, we present an overview of recent progress in N2 O isotopic studies and provide suggestions for future research, mainly focusing on: analytical techniques; production and consumption processes; and interpretation and modelling approaches. Comparing isotope-ratio mass spectrometry (IRMS) with laser absorption spectroscopy (LAS), we conclude that IRMS is a precise technique for laboratory analysis of N2 O isotopes, while LAS is more suitable for in situ/inline studies and offers advantages for site-specific analyses. When reviewing the link between the N2 O isotopic composition and underlying mechanisms/processes, we find that, at the molecular scale, the specific enzymes and mechanisms involved determine isotopic fractionation effects. In contrast, at plot-to-global scales, mixing of N2 O derived from different processes and their isotopic variability must be considered. We also find that dual isotope plots are effective for semi-quantitative attribution of co-occurring N2 O production and reduction processes. More recently, process-based N2 O isotopic models have been developed for natural abundance and 15 N-tracing studies, and have been shown to be effective, particularly for data with adequate temporal resolution. Despite the significant progress made over the last decade, there is still great need and potential for future work, including development of analytical techniques, reference materials and inter-laboratory comparisons, further exploration of N2 O formation and destruction mechanisms, more observations across scales, and design and validation of interpretation and modelling approaches. Synthesizing all these efforts, we are confident that the N2 O isotope community will continue to advance our understanding of N2 O transformation processes in all spheres of the Earth, and in turn to gain improved constraints on regional and global budgets.
ABSTRACT
Mutualistic interactions between free-living algae and fungi are widespread in nature and are hypothesized to have facilitated the evolution of land plants and lichens. In all known algal-fungal mutualisms, including lichens, algal cells remain external to fungal cells. Here, we report on an algal-fungal interaction in which Nannochloropsis oceanica algal cells become internalized within the hyphae of the fungus Mortierella elongata. This apparent symbiosis begins with close physical contact and nutrient exchange, including carbon and nitrogen transfer between fungal and algal cells as demonstrated by isotope tracer experiments. This mutualism appears to be stable, as both partners remain physiologically active over months of co-cultivation, leading to the eventual internalization of photosynthetic algal cells, which persist to function, grow and divide within fungal hyphae. Nannochloropsis and Mortierella are biotechnologically important species for lipids and biofuel production, with available genomes and molecular tool kits. Based on the current observations, they provide unique opportunities for studying fungal-algal mutualisms including mechanisms leading to endosymbiosis.
Subject(s)
Endocytosis , Mortierella/metabolism , Mycelium/metabolism , Photosynthesis , Stramenopiles/metabolism , Symbiosis , Biofuels , Lipid Metabolism , Mortierella/growth & development , Mycelium/growth & development , Stramenopiles/growth & developmentABSTRACT
We describe an approach for determining biological N2 production in soils based on the proportions of naturally occurring 15N15N in N2. Laboratory incubation experiments reveal that biological N2 production, whether by denitrification or anaerobic ammonia oxidation, yields proportions of 15N15N in N2 that are within 1 of that predicted for a random distribution of 15N and 14N atoms. This relatively invariant isotopic signature contrasts with that of the atmosphere, which has 15N15N proportions in excess of the random distribution by 19.1 ± 0.1. Depth profiles of gases in agricultural soils from the Kellogg Biological Station Long-Term Ecological Research site show biological N2 accumulation that accounts for up to 1.6% of the soil N2. One-dimensional reaction-diffusion modeling of these soil profiles suggests that subsurface N2 pulses leading to surface emission rates as low as 0.3 mmol N2 m-2 d-1 can be detected with current analytical precision, decoupled from N2O production.
Subject(s)
Nitrous Oxide , Soil , Agriculture , Denitrification , Nitrogen , Soil MicrobiologyABSTRACT
The potent greenhouse gas nitrous oxide (N2 O) may have been an important constituent of Earth's atmosphere during Proterozoic (~2.5-0.5 Ga). Here, we tested the hypothesis that chemodenitrification, the rapid reduction of nitric oxide by ferrous iron, would have enhanced the flux of N2 O from ferruginous Proterozoic seas. We empirically derived a rate law, d N 2 O d t = 7.2 × 10 - 5 [ Fe 2 + ] 0.3 [ NO ] 1 , and measured an isotopic site preference of +16 for the reaction. Using this empirical rate law, and integrating across an oceanwide oxycline, we found that low nM NO and µM-low mM Fe2+ concentrations could have sustained a sea-air flux of 100-200 Tg N2 O-N year-1 , if N2 fixation rates were near-modern and all fixed N2 was emitted as N2 O. A 1D photochemical model was used to obtain steady-state atmospheric N2 O concentrations as a function of sea-air N2 O flux across the wide range of possible pO2 values (0.001-1 PAL). At 100-200 Tg N2 O-N year-1 and >0.1 PAL O2 , this model yielded low-ppmv N2 O, which would produce several degrees of greenhouse warming at 1.6 ppmv CH4 and 320 ppmv CO2 . These results suggest that enhanced N2 O production in ferruginous seawater via a previously unconsidered chemodenitrification pathway may have helped to fill a Proterozoic "greenhouse gap," reconciling an ice-free Mesoproterozoic Earth with a less luminous early Sun. A particularly notable result was that high N2 O fluxes at intermediate O2 concentrations (0.01-0.1 PAL) would have enhanced ozone screening of solar UV radiation. Due to rapid photolysis in the absence of an ozone shield, N2 O is unlikely to have been an important greenhouse gas if Mesoproterozoic O2 was 0.001 PAL. At low O2 , N2 O might have played a more important role as life's primary terminal electron acceptor during the transition from an anoxic to oxic surface Earth, and correspondingly, from anaerobic to aerobic metabolisms.
Subject(s)
Nitrous Oxide/chemistry , Atmosphere , SeawaterABSTRACT
RATIONALE: Despite a long history and growing interest in isotopic analyses of N2 O, there is a lack of isotopically characterized N2 O isotopic reference materials (standards) to enable normalization and reporting of isotope-delta values. Here we report the isotopic characterization of two pure N2 O gas reference materials, USGS51 and USGS52, which are now available for laboratory calibration (https://isotopes.usgs.gov/lab/referencematerials.html). METHODS: A total of 400 sealed borosilicate glass tubes of each N2 O reference gas were prepared from a single gas filling of a high vacuum line. We demonstrated isotopic homogeneity via dual-inlet isotope-ratio mass spectrometry. Isotopic analyses of these reference materials were obtained from eight laboratories to evaluate interlaboratory variation and provide preliminary isotopic characterization of their δ15 N, δ18 O, δ15 Nα , δ15 Nß and site preference (SP ) values. RESULTS: The isotopic homogeneity of both USGS51 and USGS52 was demonstrated by one-sigma standard deviations associated with the determinations of their δ15 N, δ18 O, δ15 Nα , δ15 Nß and SP values of 0.12 mUr or better. The one-sigma standard deviations of SP measurements of USGS51 and USGS52 reported by eight laboratories participating in the interlaboratory comparison were 1.27 and 1.78 mUr, respectively. CONCLUSIONS: The agreement of isotope-delta values obtained in the interlaboratory comparison was not sufficient to provide reliable accurate isotope measurement values for USGS51 and USGS52. We propose that provisional values for the isotopic composition of USGS51 and USGS52 determined at the Tokyo Institute of Technology can be adopted for normalizing and reporting sample data until further refinements are achieved through additional calibration efforts.
ABSTRACT
Molecular nitrogen (N2) comprises three-quarters of Earth's atmosphere and significant portions of other planetary atmospheres. We report a 19 per mil () excess of 15N15N in air relative to a random distribution of nitrogen isotopes, an enrichment that is 10 times larger than what isotopic equilibration in the atmosphere allows. Biological experiments show that the main sources and sinks of N2 yield much smaller proportions of 15N15N in N2. Electrical discharge experiments, however, establish 15N15N excesses of up to +23. We argue that 15N15N accumulates in the atmosphere because of gas-phase chemistry in the thermosphere (>100 km altitude) on time scales comparable to those of biological cycling. The atmospheric 15N15N excess therefore reflects a planetary-scale balance of biogeochemical and atmospheric nitrogen chemistry, one that may also exist on other planets.
ABSTRACT
This study investigated the long-term associations of anthropogenic (sedimentary P, C, and N concentrations, and human population in the watershed), and climatic variables (air temperature, and river discharge) with Escherichia coli uidA and enterococci 23S rRNA concentrations in sediment cores from Anchor Bay (AB) in Lake St. Clair, and near the mouth of the Clinton River (CR), Michigan. Calendar year was estimated from vertical abundances of (137)Cs. The AB and CR cores spanned c.1760-2012 and c.1895-2012, respectively. There were steady state concentrations of enterococci in AB during c.1760-c.1860 and c.1910-c.2003 at â¼0.1 × 10(5) and â¼2.0 × 10(5) cell equivalents (CE) per g-dry wt, respectively. Enterococci concentrations in CR increased toward present day, and ranged from â¼0.03 × 10(5) to 9.9 × 10(5) CE/g-dry wt. The E. coli concentrations in CR and AB increased toward present day, and ranged from 0.14 × 10(7) to 1.7 × 10(7) CE/g-dry wt, and 1.8 × 10(6) to 8.5 × 10(6) CE/g-dry wt, respectively. Enterococci was associated with population and river discharge, while E. coli was associated with population, air temperature, and N and C concentrations (p < 0.05). Sediments retain records of the abundance of fecal indicator bacteria, and offer a way to evaluate responses to increased population, nutrient loading, and environmental policies.
Subject(s)
Enterococcus , Escherichia coli/classification , Environmental Monitoring , Geologic Sediments/microbiology , Humans , Rivers/microbiologyABSTRACT
RATIONALE: Hydrogenases catalyze the reversible formation of H2 from electrons and protons with high efficiency. Understanding the relationships between H2 production, H2 uptake, and H2-H2O exchange can provide insight into the metabolism of microbial communities in which H2 is an essential component in energy cycling. METHODS: We used stable H isotopes (1H and 2H) to probe the isotope effects associated with three [FeFe]-hydrogenases and three [NiFe]-hydrogenases. RESULTS: All six hydrogenases displayed fractionation factors for H2 formation that were significantly less than 1, producing H2 that was severely depleted in 2H relative to the substrate, water. Consistent with differences in their active site structure, the fractionation factors for each class appear to cluster, with the three [NiFe]-hydrogenases (α = 0.270.40) generally having smaller values than the three [FeFe]-hydrogenases (α = 0.410.55). We also obtained isotopic fractionation factors associated with H2 uptake and H2-H2O exchange under conditions similar to those utilized for H2 production, providing a more complete picture of the reactions catalyzed by hydrogenases. CONCLUSIONS: The fractionation factors determined in our studies can be used as signatures for different hydrogenases to probe their activity under different growth conditions and to ascertain which hydrogenases are most responsible for H2 production and/or uptake in complex microbial communities.
Subject(s)
Hydrogen/chemistry , Hydrogenase/chemistry , Iron-Sulfur Proteins/chemistry , Chemical Fractionation , Chlamydomonas reinhardtii/enzymology , Clostridium/enzymology , Deuterium/chemistry , Shewanella/enzymologySubject(s)
Ketoglutaric Acids/metabolism , Mixed Function Oxygenases/metabolism , Repressor Proteins/metabolism , Humans , Kinetics , Mixed Function Oxygenases/chemistry , Mixed Function Oxygenases/genetics , Models, Biological , Mutagenesis, Site-Directed , Oxygen/metabolism , Oxygen Isotopes , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/metabolism , Protein Structure, Tertiary , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Repressor Proteins/chemistry , Repressor Proteins/genetics , Solvents , ViscosityABSTRACT
Nitrous oxide (N2O) is a potent greenhouse gas with a 100-year global warming potential approximately 300 times that of CO2. Because microbes account for over 75% of the N2O released in the U.S., understanding the biochemical processes by which N2O is produced is critical to our efforts to mitigate climate change. In the current study, we used gas chromatography-isotope ratio mass spectrometry (GC-IRMS) to measure the δ(15)N, δ(18)O, δ(15)N(α), and δ(15)N(ß) of N2O generated by purified fungal nitric oxide reductase (P450nor) from Histoplasma capsulatum. The isotope values were used to calculate site preference (SP) values (difference in δ(15)N between the central (α) and terminal (ß) N atoms in N2O), enrichment factors (ε), and kinetic isotope effects (KIEs). Both oxygen and N(α) displayed normal isotope effects during enzymatic NO reduction with ε values of -25.7 (KIE = 1.0264) and -12.6 (KIE = 1.0127), respectively. However, bulk nitrogen (average δ(15)N of N(α) and N(ß)) and N(ß) exhibited inverse isotope effects with ε values of 14.0 (KIE = 0.9862) and 36.1 (KIE = 0.9651), respectively. The observed inverse isotope effect in δ(15)N(ß) is consistent with reversible binding of the first NO in the P450nor reaction mechanism. In contrast to the constant SP observed during NO reduction in microbial cultures, the site preference measured for purified H. capsulatum P450nor was not constant, increasing from â¼ 15 to â¼ 29 during the course of the reaction. This indicates that SP for microbial cultures can vary depending on the growth conditions, which may complicate source tracing during microbial denitrification.
Subject(s)
Histoplasma/enzymology , Isotope Labeling , Nitrous Oxide/metabolism , Oxidoreductases/metabolism , Chemical Fractionation , Kinetics , Nitric Oxide/metabolism , Nitrogen Isotopes , Oxygen IsotopesABSTRACT
RATIONALE: In recent years, research and applications of the N2O site-specific nitrogen isotope composition have advanced, reflecting awareness of the contribution of N2O to the anthropogenic greenhouse effect, and leading to significant progress in instrument development. Further dissemination of N2O isotopomer analysis, however, is hampered by a lack of internationally agreed gaseous N2O reference materials and an uncertain compatibility of different laboratories and analytical techniques. METHODS: In a first comparison approach, eleven laboratories were each provided with N2O at tropospheric mole fractions (target gas T) and two reference gases (REF1 and REF2). The laboratories analysed all gases, applying their specific analytical routines. Compatibility of laboratories was assessed based on N2O isotopocule data for T, REF1 and REF2. Results for T were then standardised using REF1 and REF2 to evaluate the potential of N2O reference materials for improving compatibility between laboratories. RESULTS: Compatibility between laboratories depended on the analytical technique: isotope ratio mass spectrometry (IRMS) results showed better compatibility for δ(15)N values, while the performance of laser spectroscopy was superior with respect to N2O site preference. This comparison, however, is restricted by the small number of participating laboratories applying laser spectroscopy. Offset and two-point calibration correction of the N2O isotopomer data significantly improved the consistency of position-dependent nitrogen isotope data while the effect on δ(15)N values was only minor. CONCLUSIONS: The study reveals that for future research on N2O isotopocules, standardisation against N2O reference material is essential to improve interlaboratory compatibility. For atmospheric monitoring activities, we suggest N2O in whole air as a unifying scale anchor.
Subject(s)
Gases/chemistry , Mass Spectrometry , Nitrogen Isotopes/chemistry , Nitrous Oxide/chemistry , Algorithms , Gases/analysis , Lasers , Mass Spectrometry/methods , Mass Spectrometry/standards , Mass Spectrometry/trends , Nitrogen Isotopes/analysis , Nitrous Oxide/analysisABSTRACT
The permanent ice cover of Lake Vida (Antarctica) encapsulates an extreme cryogenic brine ecosystem (-13 °C; salinity, 200). This aphotic ecosystem is anoxic and consists of a slightly acidic (pH 6.2) sodium chloride-dominated brine. Expeditions in 2005 and 2010 were conducted to investigate the biogeochemistry of Lake Vida's brine system. A phylogenetically diverse and metabolically active Bacteria dominated microbial assemblage was observed in the brine. These bacteria live under very high levels of reduced metals, ammonia, molecular hydrogen (H(2)), and dissolved organic carbon, as well as high concentrations of oxidized species of nitrogen (i.e., supersaturated nitrous oxide and â¼1 mmolâ L(-1) nitrate) and sulfur (as sulfate). The existence of this system, with active biota, and a suite of reduced as well as oxidized compounds, is unusual given the millennial scale of its isolation from external sources of energy. The geochemistry of the brine suggests that abiotic brine-rock reactions may occur in this system and that the rich sources of dissolved electron acceptors prevent sulfate reduction and methanogenesis from being energetically favorable. The discovery of this ecosystem and the in situ biotic and abiotic processes occurring at low temperature provides a tractable system to study habitability of isolated terrestrial cryoenvironments (e.g., permafrost cryopegs and subglacial ecosystems), and is a potential analog for habitats on other icy worlds where water-rock reactions may cooccur with saline deposits and subsurface oceans.
Subject(s)
Lakes/microbiology , Water Microbiology , Antarctic Regions , Bacteria/classification , Bacteria/genetics , Bacteria/isolation & purification , Cold Climate , Ecosystem , Evolution, Molecular , Ice , Lakes/analysis , Microscopy, Electron, Scanning , Molecular Sequence Data , Phylogeny , RNA, Bacterial/genetics , RNA, Ribosomal/geneticsABSTRACT
Hydrogenases catalyze the reversible formation of H(2), and they are key enzymes in the biological cycling of H(2). H isotopes have the potential to be a very useful tool in quantifying hydrogen ion trafficking in biological H(2) production processes, but there are several obstacles that have thus far limited the application of this tool. Here, we describe a new method that overcomes some of these barriers and is specifically designed to measure isotopic fractionation during enzyme-catalyzed H(2) evolution. A key feature of this technique is that purified hydrogenases are employed, allowing precise control over the reaction conditions and therefore a high level of precision. In addition, a custom-designed high-throughput gas chromatograph/isotope ratio mass spectrometer is employed to measure the isotope ratio of the H(2). Using our new approach, we determined that the fractionation factor for H(2) production by the [NiFe]-hydrogenase from Desulfovibrio fructosovorans is 0.273 ± 0.006. This result indicates that, as expected, protons are highly favored over deuterium ions during H(2) evolution. Potential applications of this newly developed method are discussed.
Subject(s)
Gas Chromatography-Mass Spectrometry/methods , Hydrogen/analysis , Hydrogenase/metabolism , Desulfovibrio/enzymology , Deuterium , Hydrogen/chemistry , Hydrogen/metabolism , Limit of Detection , ProtonsABSTRACT
Water samples collected during three sampling trips to Lake Erie displayed oxygen isotopic values of dissolved phosphate (delta18Op) that were largely out of equilibrium with ambient conditions, indicating that source signatures may be discerned. delta18Op, values in the Lake ranged from +10% per hundred to +17% per hundred, whereas the equilibrium value was expected to be around +14% per hundred. The riverine weighted average delta18Op, value was +11% per hundred and may represent one source of phosphate to the Lake. The lake delta18Op, values indicated that there must be one or more as yet uncharacterized source(s) of phosphate with a high delta18Op value. Potential sources other than rivers are not yet well-characterized with respectto delta18Op of phosphate, but we speculate that a likely source may be the release of phosphate from sediments under reducing conditions created during anoxic events in the hypolimnion of the central basin of Lake Erie. Identifying potential phosphorus sources to the Lake is vital for designing effective management plans for reducing nutrient inputs and associated eutrophication.
Subject(s)
Fresh Water/chemistry , Phosphates/analysis , Phosphorus/analysis , Michigan , Oxygen Isotopes , Seasons , Surface PropertiesABSTRACT
Identifying the importance of fungi to nitrous oxide (N2O) production requires a non-intrusive method for differentiating between fungal and bacterial N2O production such as natural abundance stable isotopes. We compare the isotopologue composition of N2O produced during nitrite reduction by the fungal denitrifiers Fusarium oxysporum and Cylindrocarpon tonkinense with published data for N2O production during bacterial nitrification and denitrification. The fractionation factors for bulk nitrogen isotope values for fungal denitrification were in the range -74.7 to -6.6 per thousand. There was an inverse relationship between the absolute value of the fractionation factors and the reaction rate constant. We interpret this in terms of variation in the relative importance of the rate constants for diffusion and enzymatic reduction in controlling the net isotope effect for N2O production during fungal denitrification. Over the course of nitrite reduction, the delta(18)O values for N2O remained constant and did not exhibit a relationship with the concentration characteristic of an isotope effect. This probably reflects isotopic exchange with water. Similar to the delta(18)O data, the site preference (SP; the difference in delta(15)N between the central and outer N atoms in N2O) was unrelated to concentration during nitrite reduction and, therefore, has the potential to act as a conservative tracer of production from fungal denitrification. The SP values of N2O produced by F. oxysporum and C. tonkinense were 37.1 +/- 2.5 per thousand and 36.9 +/- 2.8 per thousand, respectively. These SP values are similar to those obtained in pure culture studies of bacterial nitrification but quite distinct from SP values for bacterial denitrification. The large magnitude of the bulk nitrogen isotope fractionation and the delta(18)O values associated with fungal denitrification are distinct from bacterial production pathways; thus multiple isotopologue data holds much promise for resolving bacterial and fungal production. Our work further provides insight into the role that fungal and bacterial nitric oxide reductases have in determining site preference during N2O production.
Subject(s)
Chemical Fractionation/methods , Hypocreales/metabolism , Nitrogen/metabolism , Nitrous Oxide/metabolism , Fusarium/metabolism , Isotope Labeling , Isotopes/chemistry , Mass Spectrometry , Oxidation-ReductionABSTRACT
Bacteria and functional genes associated with biphenyl (BP) degradation in the root zone of an Austrian pine (Pinus nigra L.) growing naturally in polychlorinated-BP (PCB)-contaminated soil were identified using stable isotope probing (SIP) integrated with comprehensive functional gene analyses. SIP revealed 75 different genera that derived carbon from 13C-BP, with Pseudonocardia, Kribella, Nocardiodes and Sphingomonas predominating carbon acquisition. Rhodococcus spp. were not detected with SIP, despite being the most abundant BP utilizers isolated from agar plates. Only one organism, an Arthrobacter spp., was detected as a BP utilizer by both cultivation and SIP methods. Time-course SIP analyses indicated that secondary carbon flow from BP-utilizing bacteria into other soil organisms may have occurred largely between 4 and 14 days incubation. Functional gene contents of the BP-utilizing metagenome (13C-DNA) were explored using the GeoChip, a functional gene array containing 6465 probes targeting aromatic degradative genes. The GeoChip detected 27 genes, including several associated with catabolism of BP, benzoate and a variety of aromatic ring hydroxylating dioygenase (ARHD) subunits. Genes associated with the beta-ketoadipate pathway were also detected, suggesting a potential role for this plant aromatic catabolic pathway in PCB degradation. Further ARHD analyses using targeted polymerase chain reaction primers and sequence analyses revealed novel dioxygenase sequences in 13C-DNA, including several sequences that clustered distantly from all known ARHDs and others that resembled known Rhodococcus ARHDs. The findings improve our understanding of BP degradation and carbon flow in soil, reveal the extent of culture bias, and may benefit bioremediation research by facilitating the development of molecular tools to detect, quantify and monitor populations involved in degradative processes.
Subject(s)
Bacteria/classification , Biphenyl Compounds/metabolism , Pinus/microbiology , Plant Roots/microbiology , Polychlorinated Biphenyls/metabolism , Soil Microbiology , Soil Pollutants/metabolism , Bacteria/genetics , Bacteria/isolation & purification , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Biodegradation, Environmental , Carbon Isotopes/metabolism , Molecular Sequence Data , Oligonucleotide Array Sequence Analysis , Phylogeny , Sequence Analysis, DNAABSTRACT
Direct measurements of rates of primary production in Lake Erie are few and uncertainties surround rate measurements based on radiocarbon and the light-dark bottle incubation methods. For these reasons, we conducted a series of simultaneous primary productivity measurements in Lake Erie in July and August of 2003, based on incubation with [14C]-NaHCO3, the light-dark bottle method, and incubation with (18)O enriched water. Significant differences in the rates of primary production obtained by incubations with [(18)O]-H2O (0.19-34.60 mmol-O2 m(-3) h(-1)), [14C]-NaHCO3 (0.03-90.50 mmol-C m(-3) h(-1)), and light-dark bottles (0.06-60.78 mmol-O2 m(-3) h(-1)) were evident in six out of nine comparisons. Within the epilimnion, [(18)O]-H2O rates of primary production were significantly different from rates based on [14C]-NaHCO3 and light-dark bottles in all four comparisons and lower rates were obtained in three out of four comparisons. Eutrophic conditions in Sandusky Bay, Lake Erie were evident from the high primary production rates of 20.50-34.60 mmol-O2 m(-3) h(-1) ([(18)O]-H2O), 34.39-90.50 mmol-C m(-3) h(-1) ([14C]-NaHCO3), and 46.66-60.78 mmol-O2 m(-3) h(-1) (light-dark bottle). The photosynthetic quotient (PQ), or ratio of O2 production to CO2 consumption during photosynthesis, averaged 0.64+/-0.33 and 1.93+/-1.93, respectively, based on a comparison of [(18)O]-H2O to [14C]-NaHCO3 rates or light-dark bottle to [14C]-NaHCO3 production rates, respectively, demonstrating that photosynthesis in Lake Erie communities primarily follows expected stochiometric trends. The average of the ratio of production rates based on incubation with [(18)O]-H2O relative to those obtained by the light-dark incubation method was 0.66+/-0.33, indicating a tendency for the [(18)O]-H2O method to provide slightly lower estimates of production in Lake Erie. Lower estimates of primary production based on [(18)O]-H2O incubation relative to the other two approaches is most likely a consequence of consumption of labeled O2 within the cell or dilution of label by the release of O2 from supersaturated cells. This latter effect may be particularly characteristic of eutrophic environments.
Subject(s)
Ecosystem , Eutrophication/physiology , Fresh Water/chemistry , Photosynthesis/physiology , Carbon Dioxide/metabolism , Carbon Radioisotopes/metabolism , Chlorophyll/metabolism , Chlorophyll A , Fluorometry , Fresh Water/microbiology , Ohio , Oxygen Isotopes/metabolismABSTRACT
We investigated the effects of recent moisture history on the relative production of N2O and N2 during denitrification in soil from cropped and successional ecosystems. The soils were pedogenically identical but had been managed differently for the past decade. Sieved soils were amended with nitrate, glucose, and water. Long-wet and short-wet incubations received 80 and 0%, respectively, of prescribed water 2 d before incubation and the rest just before incubation. The N2O and N2 production and N2O mole fraction (N2O/[N2O + N2]) were measured using acetylene inhibition. The N2 production and soil 15N enrichment were measured by 15N-gas evolution. The response of N2O mole fraction to moisture history differed by ecosystem. Mean N2O mole fraction in the successional system was about the same for long-wet and short-wet treatments (0.34 and 0.33, respectively). For the cropped system, however, the N2O mole fraction was 0.36 for the long-wet and 0.90 for the short-wet treatment. Thus, in the cropped system a much smaller proportion of end product was N2O if soil had been wet for 2 d. For N2 fluxes, the isotope method gave the same pattern (r = 0.92) but only about one-third the magnitude, suggesting that N2 derived from two distinct pools. Differences in response of N2O mole fraction for successional and cropped soils may be due to differences in microbial communities. Further knowledge of ecosystem differences with respect to N2O mole fraction and recent moisture history may improve modeled estimates of local and global N2O fluxes.