Optical properties of graphene nanoflakes: Shape matters.

In recent years there has been significant debate on whether the edge type of graphene nanoflakes (GNFs) or graphene quantum dots (GQDs) are relevant for their electronic structure, thermal stability, and optical properties. Using computer simulations, we have proven that there is a fundamental difference in the absorption spectra between samples of the same shape, similar size but different edge type, namely, armchair or zigzag edges. These can be explained by the presence of electronic structures near the Fermi level which are localized on the edges. These features are also evident from the dependence of band gap on the GNF size, which shows three very distinct trends for different shapes and edge geometries.

Photoinduced charge-transfer dynamics simulations in noncovalently bonded molecular aggregates.

The rational design of new materials as prototype systems for organic solar cells remains challenging. Perylene diimide has emerged as a promising material to replace fullerene derivatives because of its synthetic flexibility, leading to the manipulation of their optical properties. As a result of their fused aromatic core that favors π-π stacking interactions, the aggregation of these molecules can reach highly ordered nanostructures as one-dimensional nanofibers, with a fast photoinduced charge transfer mechanism. In this article, we present an atomistic description of the photoexcited exciton dynamics in noncovalently bonded perylene diimides by time integration of the electron density in the presence of external time varying electric fields. We show that our approach is able to capture and explain the physics that underlies the charge transport mechanism through perylene diimide aggregates.

Bioelectrochemical sensing of promethazine with bamboo-type multiwalled carbon nanotubes dispersed in calf-thymus double stranded DNA.

We report the quantification of promethazine (PMZ) using glassy carbon electrodes (GCE) modified with bamboo-like multi-walled carbon nanotubes (bCNT) dispersed in double stranded calf-thymus DNA (dsDNA) (GCE/bCNT-dsDNA). Cyclic voltammetry measurements demonstrated that PMZ presents a thin film-confined redox behavior at GCE/bCNT-dsDNA, opposite to the irreversibly-adsorbed behavior obtained at GCE modified with bCNT dispersed in ethanol (GCE/bCNT). Differential pulse voltammetry-adsorptive stripping with medium exchange experiments performed with GCE/bCNT-dsDNA and GCE modified with bCNTs dispersed in single-stranded calf-thymus DNA (ssDNA) confirmed that the interaction between PMZ and bCNT-dsDNA is mainly hydrophobic. These differences are due to the intercalation of PMZ within the dsDNA that supports the bCNTs, as evidenced from the bathochromic displacement of UV-Vis absorption spectra of PMZ and quantum dynamics calculations at DFTB level. The efficient accumulation of PMZ at GCE/bCNT-dsDNA made possible its sensitive quantification at nanomolar levels (sensitivity: (3.50±0.05)×10(8) µA·cm(-2)·M(-1) and detection limit: 23 nM). The biosensor was successfully used for the determination of PMZ in a pharmaceutical product with excellent correlation.

Electron dynamics in complex environments with real-time time dependent density functional theory in a QM-MM framework.

This article presents a time dependent density functional theory (TDDFT) implementation to propagate the Kohn-Sham equations in real time, including the effects of a molecular environment through a Quantum-Mechanics Molecular-Mechanics (QM-MM) hamiltonian. The code delivers an all-electron description employing Gaussian basis functions, and incorporates the Amber force-field in the QM-MM treatment. The most expensive parts of the computation, comprising the commutators between the hamiltonian and the density matrix-required to propagate the electron dynamics-, and the evaluation of the exchange-correlation energy, were migrated to the CUDA platform to run on graphics processing units, which remarkably accelerates the performance of the code. The method was validated by reproducing linear-response TDDFT results for the absorption spectra of several molecular species. Two different schemes were tested to propagate the quantum dynamics: (i) a leap-frog Verlet algorithm, and (ii) the Magnus expansion to first-order. These two approaches were confronted, to find that the Magnus scheme is more efficient by a factor of six in small molecules. Interestingly, the presence of iron was found to seriously limitate the length of the integration time step, due to the high frequencies associated with the core-electrons. This highlights the importance of pseudopotentials to alleviate the cost of the propagation of the inner states when heavy nuclei are present. Finally, the methodology was applied to investigate the shifts induced by the chemical environment on the most intense UV absorption bands of two model systems of general relevance: the formamide molecule in water solution, and the carboxy-heme group in Flavohemoglobin. In both cases, shifts of several nanometers are observed, consistently with the available experimental data.

A theoretical study of the optical properties of nanostructured TiO2.

Optical properties of TiO(2) nanoclusters (with more than 30 TiO(2) units) were calculated within a fully atomistic quantum dynamic framework. We use a time dependent tight-binding model to describe the electronic structure of TiO(2) nanoclusters in order to compute their optical properties. We present calculated absorption spectra for a series of nanospheres of different radii and crystal structures. Our results show that bare TiO(2) nanoclusters have the same adsorption edge for direct electronic transition independently of the crystal structure and the nanocluster size. We report values of the adsorption edge of around 3.0 eV for all structures analyzed. In the present work we demonstrate that, for small clusters, both the direct transition absorption edge and the blue shifting phenomena are masked by thermal disorder.

Quantum Dynamical Simulations as a Tool for Predicting Photoinjection Mechanisms in Dye-Sensitized TiO2 Solar Cells.

On the basis of a time-dependent self-consistent density functional tight-binding (TD-DFTB) approach, we present a novel method able to capture the differences between direct and indirect photoinjection mechanisms in a fully atomistic picture. A model anatase TiO2 nanoparticle (NP) functionalized with different dyes has been chosen as the object of study. We show that a linear dependence of the rate of electron injection with respect to the square of the applied field intensity can be viewed as a signature of a direct electron injection mechanism. In addition, we show that the nature of the photoabsorption process can be understood in terms of orbital population dynamics occurring during photoabsorption. Dyes involved in both direct (type-I) and indirect (type-II) mechanisms were studied to test the predictive power of this method.

Transition dipole moments of the Qy band in photosynthetic pigments.

From studying the time evolution of the single electron density matrix within a density functional tight-binding formalism we calculate the Q(y) transition dipole moments vector direction and strength for a series of important photosynthetic pigments. We obtain good agreement with first-principles and experimental results and provide insights into the detailed nature of these excitations from the time evolving populations of molecular orbitals involved as well as correlations between pigment chemistry and dipole strength.

Dynamical simulation of the optical response of photosynthetic pigments.

From time integration of the electron dynamics under a density functional tight binding Hamiltonian in the presence of external time varying electric fields, we obtain the absorption spectra of a series of chlorophylls and bacteriochlorophylls. We obtain good agreement with the observed experimental energies as well as with fully ab initio results in the literature for the main absorption bands. As a first step towards an atomistic description of energy transfer between chromophores in photosynthetic antenna systems we calculate the coupling energy between the excitations of two chlorophyll a molecules as a function of the distance as well as the transfer of energy between these when one of them is subjected to laser illumination.