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1.
East Mediterr Health J ; 20(2): 112-9, 2014 Mar 13.
Article in English | MEDLINE | ID: mdl-24945560

ABSTRACT

The continuing state of conflict and the resulting devastation of infrastructure have made Afghanistan exceptionally vulnerable to disease epidemics. The paper reports initiatives by the United States Naval Medical Research Unit No. 3 to promote capacity building in a number of key medical laboratories and enable the Afghans to detect emerging and re-emerging diseases of public health importance. Equipment, supplies and laboratory staff training were critical for disease diagnosis and fulfillment of obligations of the International Health Regulations 2005. Accordingly, many diseases outbreaks were recently identified, including avian and pandemic influenza, febrile illness, watery diarrhoea, jaundice and leishmaniasis. Clinical samples and disease vectors were collected for analysis, and microbial isolates were obtained for further characterization. The expanded range and enhanced accuracy of laboratory procedures have facilitated selected local laboratories to monitor, detect, identify, assess, contain and respond to public health threats. Nevertheless, policies of sustainability and infectious diseases control need continuous support and emphasis.


Subject(s)
Capacity Building/organization & administration , Communicable Disease Control/organization & administration , Communicable Diseases/diagnosis , Laboratories/organization & administration , Laboratory Personnel/education , Public Health , Afghanistan/epidemiology , Capacity Building/methods , Communicable Disease Control/methods , Communicable Disease Control/standards , Communicable Diseases/epidemiology , Disease Outbreaks/prevention & control , Equipment and Supplies/standards , Equipment and Supplies/supply & distribution , Humans , International Cooperation , Laboratories/standards , Laboratory Personnel/supply & distribution , Population Surveillance/methods , United States , Workforce
2.
Article in English | WHO IRIS | ID: who-200596

ABSTRACT

The continuing state of conflict and the resulting devastation of infrastructure have made Afghanistan exceptionally vulnerable to disease epidemics.The paper reports initiatives by the United States Naval Medical Research Unit No.3 to promote capacity building in a number of key medical laboratories and enable the Afghans to detect emerging and re-emerging diseases of public health importance.Equipment, supplies and laboratory staff training were critical for disease diagnosis and fulfilment of obligations of the International Health Regulations 2005.Accordingly, many diseases outbreaks were recently identified, including avian and pandemic influenza, febrile illness, watery diarrhoea, jaundice and leishmaniasis.Clinical samples and disease vectors were collected for analysis, and microbial isolates were obtained for further characterization.The expanded range and enhanced accuracy of laboratory procedures have facilitated selected local laboratories to monitor, detect, identify, assess, contain and respond to public health threats.Nevertheless, policies of sustainability and infectious diseases control need continuous support and emphasis


إن حالة الصراع المتواصل وما ينجم عنه من تدمير للبنية الأساسية قد جعلت أفغانستان عرضة بشكل كبير لأوبئة الأمراض. وتعمد هذه الورقة إلى عرض ما طرحته الوحدة الثالثة للبحوث الطبية للبحرية الأمريكية من مبادرات لتعزيز بناء القدرات في عدد من المختبرات الطبية الأساسية، ولتمكين الأفغان من اكتشاف الأمراض الناشئة والمنبعثة والتي تمثل أهمية للصحة العمومية. فالمعدات والإمدادات وتدريب العاملين في المختبرات تعد من الأمور الأساسية في تشخيص الأمراض، والوفاء بالالتزامات بموجب اللوائح الصحية الدولية 2005 . ومن ثم فقد تم مؤخرا اكتشاف العديد من فاشيات الأمراض بما فيها أنفلونزا الطيور والأنفلونزا الجائحية، والأمراض الحموية، والإسهال المائي، واليرقان، وداء الليشمانيات. وقد تم تجميع العينات السريرية ونواقل الأمراض بغرض تحليلها. وتم كذلك الحصول على المستفردات الميكروبية للتعرف بشكل أكبر على المزيد من خصائصها. وقد ساعد توسيع نطاق الإجراءات المختبرية وتعزيز دقتها، مختبرات محلية معينة على رصد واكتشاف وتحديد وتقييم واحتواء المخاطر التي تهدد الصحة العمومية ومجابهتها.ومع هذا فإن السياسات الخاصة بالاستدامة ومكافحة الأمراض المعدية بحاجة إلى مواصلة الدعم والتأكيد


La persistance du conflit ainsi que la destruction des infrastructures qui en résulte ont rendu l'Afghanistan exceptionnellement vulnérable aux épidémies.Le présent travail de recherche détaille les initiatives de l'Unité de recherche médicale de la marine des Etats-Unis d'Amérique [NAMRU-3]visant à promouvoir le renforcement des capacités de plusieurs laboratoires médicaux clés et à permettre aux Afghans de dépister des maladies émergentes et réémergentes qui sont importantes sur le plan de la santé publique.Les équipements, les fournitures et la formation du personnel de laboratoire étaient critiques pour le diagnostic des maladies et le respect des obligations découlant du Règlement sanitaire international [2005]. En conséquence, de nombreuses flambées épidémiques ont récemment été identifiées, notamment les grippes aviaire et pandémique, les maladies fébriles, les diarrhées aqueuses, l'ictère et la leishmaniose.Des échantillons cliniques ainsi que des vecteurs de maladie ont été collectés pour analyse, et des isolats microbiens ont été obtenus pour affiner la caractérisation.L'éventail élargi et la précision accrue des procédures de laboratoire ont permis aux laboratoires locaux sélectionnés de suivre, de dépister, d'identifier, d'évaluer, d'endiguer les menaces de santé publique et d'y répondre.Toutefois, les politiques visant à assurer la pérennité de ces capacités et la lutte contre les maladies infectieuses nécessitent un appui et un effort permanents


Subject(s)
Laboratories , Clinical Laboratory Services , Health Facilities , Education
3.
Diagn Microbiol Infect Dis ; 47(2): 399-405, 2003 Oct.
Article in English | MEDLINE | ID: mdl-14522513

ABSTRACT

The relationship between enterotoxigenic Escherichia coli (ETEC) and hospitalized patients with acute diarrhea was examined in a study conducted in two hospitals from June 2000 to May 2001 in Denpasar, Bali, Indonesia. A total of 489 hospitalized patients with acute diarrhea were enrolled, and their rectal swabs were screened for enteric bacterial pathogens. Toxins, colonization factor antigens (CFAs), in vitro antimicrobial susceptibility and seasonal distribution patterns associated with ETEC were ascertained. The diagnosis of ETEC infection and CFAs association were performed with GM-1 ELISA and Dot blot immunoassays. Enterotoxigenic Escherichia coli was isolated from the rectal swabs of 14.9% of the patients. The distribution of toxins among the ETEC strains found was ST in 51 (69.9%), while LT and ST/LT were found in 28.8% and 1.3% respectively. The highest isolation rate for ETEC was found among children between the ages of 1 and 15 years. Colonization factor antigens were identified in 28.8% of the ETEC strains. A high prevalence of CFA was found among the rectal swabs of patients with ST isolates. High frequency of resistance to ampicillin, trimethoprim/sulfamethoxazole, chloramphenicol, tetracycline and cephalothin was displayed among the ETEC strains. All ETEC strains were susceptible to norfloxacin, ciprofloxacin and nalidixic acid. The results of this study document the prevalence of ETEC in hospitalized patients with acute diarrhea in Denpasar, Bali, Indonesia. Data generated in this study depicts the prevalence of ETEC diarrhea and CFA types among diarrhea patients in the tourist city of Denpasar, Bali, Indonesia.


Subject(s)
Bacterial Toxins/metabolism , Diarrhea/epidemiology , Enterotoxins/metabolism , Escherichia coli Proteins , Escherichia coli/isolation & purification , Hospitalization , Acute Disease , Adolescent , Adult , Anti-Bacterial Agents/pharmacology , Child , Child, Preschool , Diarrhea/microbiology , Escherichia coli/drug effects , Escherichia coli Infections/epidemiology , Escherichia coli Infections/microbiology , Female , Fimbriae Proteins/metabolism , Humans , Indonesia/epidemiology , Male , Microbial Sensitivity Tests , Prevalence , Rectum/microbiology , Seasons , Specimen Handling/methods
4.
Am J Trop Med Hyg ; 67(5): 533-8, 2002 Nov.
Article in English | MEDLINE | ID: mdl-12479558

ABSTRACT

Campylobacter is a leading cause of traveler's diarrhea in Thailand. Since resistance to quinolones is high among Campylobacter isolates, empiric therapy with quinolones for traveler's diarrhea may be ineffective in this region. We conducted an observational study among 169 U.S. military personnel with acute diarrhea and compared their microbiologic findings to those of 77 asymptomatic personnel deployed to Thailand in May 1998. Of 146 pathogenic bacterial isolates, the most common were nontyphoidal Salmonella (n = 31), enterotoxigenic Escherichia coli (n = 24), and C. jejuni/coli (n = 23). Campylobacter was strongly associated with disease (odds ratio = 5.9; 95% confidence interval = 1.3-37.3), with a more severe clinical presentation, and with a reduced functional ability at presentation (P = 0.02). In vitro resistance to ciprofloxacin was observed in 96% of the Campylobacter isolates. Sub-optimal treatment response to ciprofloxacin was observed in 17% of the cases of Campylobacter infection versus 6% due to other causes. These results highlight the importance of Campylobacter as a cause of severe traveler's diarrhea in Thailand and illustrates the ongoing problem with antibiotic-resistant strains and associated treatment problems.


Subject(s)
Campylobacter Infections/epidemiology , Campylobacter Infections/microbiology , Diarrhea/epidemiology , Diarrhea/microbiology , Drug Resistance, Bacterial , Military Personnel , Adult , Anti-Infective Agents/pharmacology , Anti-Infective Agents/therapeutic use , Campylobacter Infections/drug therapy , Diarrhea/drug therapy , Female , Fluoroquinolones , Gram-Negative Bacteria/drug effects , Gram-Negative Bacteria/isolation & purification , Humans , Male , Thailand/epidemiology , United States
5.
J Med Virol ; 67(2): 253-8, 2002 Jun.
Article in English | MEDLINE | ID: mdl-11992587

ABSTRACT

Norwalk Virus and Norwalk-like viruses (NLVs) are reportedly responsible for 2.5-4.0% of nonbacterial acute gastroenteritis (NBAG) worldwide. To help clarify the impact of NLVs on NBAG in Indonesia, stool specimens from 102 patients, 74 with NBAG and 28 with BAG, were screened for the presence of NLVs, using a reverse transcription-polymerase chain reaction (RT-PCR) assay. The specimens were subtyped using prototype-specific oligonucleotide probes and were sequenced and compared with published NLV sequences. Of the 102 specimens examined, 31 (30%) were found to be positive for NLVs. Type-specific probe analysis of the RT-PCR products indicated that 31 isolates hybridized to UK1 (Taunton agent) and UK3/4 (Hawaii agent/Snow Mountain agent) prototype strains. The results of this study indicate that prototype strains of NV or NLVs co-circulate in Indonesia and contribute to the overall level of acute gastroenteritis throughout the region.


Subject(s)
Caliciviridae Infections/virology , Gastroenteritis/virology , Norovirus/classification , Norovirus/genetics , Acute Disease , Base Sequence , Child , Child, Preschool , Feces/virology , Humans , Indonesia , Infant , Infant, Newborn , Molecular Sequence Data , Reverse Transcriptase Polymerase Chain Reaction , Sequence Analysis, DNA
6.
J Appl Microbiol ; 92(6): 1167-71, 2002.
Article in English | MEDLINE | ID: mdl-12010557

ABSTRACT

AIMS: Subtyping of Salmonella Paratyphi A isolates from India, Pakistan, Indonesia and Malaysia was carried out by pulsed-field gel electrophoresis (PFGE) to assess the extent of genetic diversity of these isolates from different endemic countries. METHODS AND RESULTS: A total of 39 human isolates of Salmonella Paratyphi A from Pakistan, India, Indonesia and Malaysia were studied using PFGE analysis following digestion of chromosomal DNA with XbaI. Seven isolates from Pakistan were resistant to ampicillin, tetracycline and cotrimoxazole. It was noted that Salmonella Paratyphi A isolates obtained from outbreaks in India had limited genetic diversity and probably belonged to closely related clones. Significant genetic homogeneity was observed among antimicrobial-resistant isolates from Pakistan and antimicrobial-sensitive isolates from Pakistan and Indonesia, respectively. CONCLUSIONS: PFGE was a useful subtyping technique to differentiate Salmonella Paratyphi A from different endemic countries. However, it fails to differentiate the antimicrobial-resistant and -sensitive strains. SIGNIFICANCE AND IMPACT OF THE STUDY: The findings of the present study verify the usefulness of PFGE in characterizing and comparing strains of Salmonella Paratyphi A. Our study suggests that a limited number of clones are responsible for paratyphoid fever in these countries.


Subject(s)
Paratyphoid Fever/microbiology , Salmonella paratyphi A/genetics , Asia/epidemiology , DNA, Bacterial/analysis , Disease Outbreaks , Endemic Diseases , Genetic Variation , Humans , Paratyphoid Fever/epidemiology , Salmonella paratyphi A/classification
7.
FEMS Immunol Med Microbiol ; 33(1): 27-33, 2002 Mar 25.
Article in English | MEDLINE | ID: mdl-11985965

ABSTRACT

Norwalk-like viruses (NLVs), rotavirus and adenovirus are reportedly responsible from 4 to 42% of non-bacterial acute sporadic gastroenteritis. The incidence of NLVs, adenovirus and rotavirus infections in Indonesia is unclear. A total of 402 symptomatic cases from Indonesian patients with acute gastroenteritis and 102 asymptomatic controls that tested negative for bacteria and parasites were screened for the presence of NLVs, rotavirus and adenovirus using the reverse transcriptase-polymerase chain reaction (RT-PCR), Rotaclone kits and Adenoclone kits. Specific prototype probes were used to ascertain which NLV prototypes were present in the area. NLVs were detected in 45/218 (21%), rotavirus was detected in 170/402 (42%) and adenovirus was detected in 11/273 (4%) samples examined. Genetic analysis of the RT-PCR products using specific prototype probes for NLVs indicated that the prototypes were 42% Taunton agent and 58% Hawaii/Snow Mountain agent. Comparative data on patients showed that the incidence of rotavirus infections was two times greater than the NLVs infections, and that adenovirus infections were the least prevalent. All of the control samples tested were negative for NLVs and adenoviruses, however 8/70 (11%) of the samples were positive for rotaviruses. The high incidence of enteric viral-related infections is a threat among acute diarrheic patients in Jakarta, Indonesia.


Subject(s)
Adenovirus Infections, Human/epidemiology , Adenoviruses, Human/isolation & purification , Caliciviridae Infections/epidemiology , Gastroenteritis/epidemiology , Norovirus/isolation & purification , Rotavirus Infections/epidemiology , Rotavirus/isolation & purification , Acute Disease , Adenovirus Infections, Human/virology , Adolescent , Adult , Age Distribution , Aged , Caliciviridae Infections/virology , Child , Child, Preschool , DNA, Viral/isolation & purification , Diarrhea, Infantile/epidemiology , Diarrhea, Infantile/virology , Feces/virology , Female , Gastroenteritis/virology , Humans , Incidence , Indonesia/epidemiology , Infant , Infant, Newborn , Male , Middle Aged , Rain , Reagent Kits, Diagnostic , Reverse Transcriptase Polymerase Chain Reaction , Rotavirus Infections/virology , Seasons , Sex Distribution , Urban Population
8.
J Med Virol ; 66(3): 400-6, 2002 Mar.
Article in English | MEDLINE | ID: mdl-11793394

ABSTRACT

Norwalk virus (NV) and Norwalk-like viruses (NLVs) are common etiologic agents of viral gastroenteritis. Viral gastroenteritis is a common disease that is highly transmissible, spreading rapidly through families, institutions, and communities. Because methods for in vitro cultivation of Norwalk etiologic agents are not available, information regarding this syndrome has come largely from studies in human volunteers. Sequential passaging of an NLV through an immunoincompetent newborn pigtail macaque (Macaca nemestrina) may allow for the adaptation of a human NLV to a primate host, thus providing an animal model for investigating this disease. A fecal filtrate of human origin containing NLV, Toronto virus P2-A, was obtained from a patient during an epidemic of viral gastroenteritis. The filtrate was administered via nasogastric tube to three newborn pigtailed macaques. Clinical illness, which was characterized by diarrhea, dehydration, and vomiting, occurred in three monkeys. Reverse transcription-polymerase chain reaction (RT-PCR) and oligonucleotide probe analysis of RNA extracted from the stool samples following infection revealed viral RNA in all inoculated monkeys. Infection was also transmitted experimentally by feeding two additional newborn macaques a fecal filtrate prepared from the three previously infected animals. Detection of viral RNA in the stools of animals that received the fecal filtrate indicates that viral replication occurred in association with clinical illness. The susceptibility of Macaca nemestrina to infection with a Norwalk-like agent will facilitate the study of the mechanisms of the pathogenesis of NLV. This system may also have the potential to serve as a vaccine test model for human epidemic viral gastroenteritis.


Subject(s)
Caliciviridae Infections/virology , Disease Outbreaks , Gastroenteritis/virology , Norovirus/physiology , Animals , Antibodies, Viral/blood , Caliciviridae Infections/blood , Caliciviridae Infections/immunology , Disease Models, Animal , Enzyme-Linked Immunosorbent Assay , Female , Gastroenteritis/blood , Gastroenteritis/immunology , Humans , Macaca nemestrina , Male , Norovirus/genetics , Norovirus/immunology , Norovirus/ultrastructure
9.
Am J Trop Med Hyg ; 65(2): 120-4, 2001 Aug.
Article in English | MEDLINE | ID: mdl-11508385

ABSTRACT

Infection caused by enterotoxigenic Escherichia coli (ETEC) poses a serious health problem among children and adults in developing countries. Colonization of the small intestinal mucosa by ETEC strains is mediated by antigenically specific fimbriae, also known as colonization factor antigens (CFA). The significance of this study arises from reports that active and passive immunization with ETEC strains harboring CFAs has previously been shown to induce protective immunity against diarrhea in animal models. The aim of this study was to determine toxin-associated CFAs of ETEC isolated from a diarrheal disease case-control study in Jakarta, Indonesia. Thirteen hundred and twenty-three diarrheic and control patients with lactose-fermenting colonies were screened by ganglioside GM1-enzyme-linked immunosorbent assay (GM1-ELISA) for heat-labile (LT) and heat-stable (ST) toxins. Two hundred and forty-six (19%) ETEC isolates identified by GM1-ELISA for the LT/ST toxins were screened for CFAs by Dot blot assay using monoclonal antibodies against CFA/I, II, and IV and against the putative colonization antigens (PCF) PCFO159, PCFO166, CS7, and CS17. Of the 246 ETEC isolates, 177 (72%) elaborated ST, 56 (23%) produced LT, while 13 (5%) elicited both the ST and LT toxins. CFA testing of the 246 ETEC isolates showed that 21 (8%) expressed CFA/I, 3 (1%) exhibited CFA/II, 14 (6%) elaborated CFA/IV, while 7 (3%) expressed PCFO159 and PCFO159 plus CS5. No CFAs or PCFs could be associated with 201 (82%) of the ETEC strains. This report documents the types of CFAs associated with ETEC strains in Jakarta, Indonesia. These data may help current research efforts on the development of CFA-based vaccines for humans against ETEC and provide additional information for future ETEC vaccine trials in Southeast Asia.


Subject(s)
Bacterial Proteins/analysis , Bacterial Toxins/analysis , Diarrhea/microbiology , Enterotoxins/analysis , Escherichia coli Infections/microbiology , Escherichia coli Proteins , Escherichia coli/immunology , Fimbriae Proteins , Adolescent , Adult , Case-Control Studies , Child , Child, Preschool , Diarrhea/epidemiology , Enzyme-Linked Immunosorbent Assay , Escherichia coli/isolation & purification , Escherichia coli/pathogenicity , Escherichia coli Infections/epidemiology , Feces/microbiology , Female , Gangliosides , Humans , Immunoblotting , Indonesia/epidemiology , Infant , Male , Middle Aged
10.
Emerg Infect Dis ; 7(1): 137-40, 2001.
Article in English | MEDLINE | ID: mdl-11266305

ABSTRACT

From June 1998 through November 1999, Shigella spp. were isolated in 5% of samples from 3,848 children and adults with severe diarrheal illness in hospitals throughout Indonesia. S. dysenteriae has reemerged in Bali, Kalimantan, and Batam and was detected in Jakarta after a hiatus of 15 years.


Subject(s)
Shigella dysenteriae/isolation & purification , Adult , Child , Drug Resistance, Microbial , Humans , Indonesia , Microbial Sensitivity Tests , Shigella dysenteriae/drug effects
11.
Diagn Microbiol Infect Dis ; 39(2): 71-5, 2001 Feb.
Article in English | MEDLINE | ID: mdl-11248518

ABSTRACT

A diarrhea study was conducted in North Jakarta, Indonesia from December 1996 through December 1997. Vibrio parahaemolyticus was isolated from 333 (6.1%) of 5442 rectal swab samples collected from patients with cholera-like diarrhea. Vibrio cholerae O1 was isolated from 545 (10.0%) and V. cholerae non-O1 from 183 samples (3.4%), respectively. Patients positive for V. parahaemolyticus were mostly adults between 20 and 40 years of age, with males constituting 62%. A majority (65%) of these patients demonstrated watery diarrhea with a frequency of fewer than 10 episodes per 24 hour. A large number of the patients had abdominal pain (83%) and vomiting (76%) and were non-febrile (90%). The highest isolation rate (9.6%) of V. parahaemolyticus was found during the dry season (June, July) and the lowest (4.5%) in the rainy season (December, January, February). All of the V. parahaemolyticus isolates were hemolytic on human blood agar (positive Kanagawa) but none was urease positive. Disk diffusion antibiotic susceptibility tests performed on the isolates demonstrated resistance to ampicillin (98%), cephalothin (24%), kanamycin (15%), colistin (97%), neomycin (2%) and ceftriaxone (0.3%). All isolates (100%) were sensitive to chloramphenicol, tetracycline, trimethoprim-sulfamethoxazole, gentamicin, and ciprofloxacin.


Subject(s)
Vibrio Infections/epidemiology , Vibrio Infections/microbiology , Vibrio parahaemolyticus/isolation & purification , Cholera/epidemiology , Cholera/microbiology , Cholera/physiopathology , Diarrhea/microbiology , Diarrhea/physiopathology , Humans , Indonesia/epidemiology , Seasons , Vibrio Infections/physiopathology , Vibrio cholerae/isolation & purification
12.
Antimicrob Agents Chemother ; 45(1): 359-62, 2001 Jan.
Article in English | MEDLINE | ID: mdl-11120999

ABSTRACT

Antibiotic susceptibilities were determined for 122 Neisseria gonorrheae isolates obtained from 400 sex workers in Jakarta, Indonesia, and susceptibilities to ciprofloxacin, cefuroxime, cefoxitin, cefotaxime, ceftriaxone, chloramphenicol, and spectinomycin were found. All isolates were resistant to tetracycline. A number of the isolates demonstrated decreased susceptibilities to erythromycin (MIC >/= 1.0 microg/ml), thiamphenicol (MIC >/= 1.0 microg/ml), kanamycin (MIC >/= 16.0 microg/ml), penicillin (MIC >/= 2.0 microg/ml), gentamicin (MIC >/= 16.0 microg/ml), and norfloxacin (MIC = 0.5 microg/ml). These data showed that certain antibiotics previously used in the treatment of gonorrhea are no longer effective.


Subject(s)
Anti-Bacterial Agents/pharmacology , Gonorrhea/genetics , Neisseria gonorrhoeae/drug effects , Drug Resistance, Microbial , Female , Gonorrhea/epidemiology , Humans , Indonesia/epidemiology , Microbial Sensitivity Tests , Neisseria gonorrhoeae/enzymology , Sex Work , beta-Lactamases/metabolism
13.
Am J Trop Med Hyg ; 65(6): 788-97, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11791976

ABSTRACT

Cholera-specific surveillance in Indonesia was initiated to identify the introduction of the newly recognized Vibrio cholerae non-O1, O139 serotype. Findings from seven years (1993-1999) of surveillance efforts also yielded regional profiles of the importance of cholera in both epidemic and sporadic diarrheal disease occurrence throughout the archipelago. A two-fold surveillance strategy was pursued involving 1) outbreak investigations, and 2) hospital-based case recognition. Rectal swabs were transported to Jakarta for culture and isolates were characterized by serotypic identification. Outbreak findings showed that V. cholerae O1, Ogawa serotype, was the predominant etiology in all 17 instances of investigated epidemic transmission. Monitoring of eight hospitals representing seven provinces provided 6,882 specimens, of which 9% were culture positive for V. cholerae: 589 (9%) for O1 and 20 (< 1%) for non-O1 strains. Proportional representation of V. cholerae O1 among cases of sporadic diarrheal illness was variable, ranging from 13% in Jakarta to < 1% in Batam. Overall, 98% of V. cholerae O1 cases were the Ogawa serotype. There was no instance of non-O1, O139 serotype introduction in either epidemic or sporadic disease form. Anti-microbial drug susceptibility was consistently demonstrated, both temporally and spatially, except against colistin. Evidence is provided that epidemic and sporadic cholera occurrence in western Indonesia is associated with periods of low rainfall. Conversely, in the more eastern portion of the country, heavy rainfall may have contributed to epidemic cholera transmission.


Subject(s)
Cholera/epidemiology , Disease Outbreaks , Population Surveillance/methods , Vibrio cholerae/isolation & purification , Adolescent , Adult , Aged , Aged, 80 and over , Child , Child, Preschool , Cholera/microbiology , Diarrhea/microbiology , Female , Humans , Indonesia/epidemiology , Infant , Male , Middle Aged , Rain , Seasons
14.
J Health Popul Nutr ; 18(1): 33-8, 2000 Jun.
Article in English | MEDLINE | ID: mdl-11014768

ABSTRACT

While Campylobacter, Salmonella, and Shigella remain major contributors to acute enteric infections, few studies on these pathogens have been conducted in Egypt. From January 1986 to December 1993, 869 Salmonella, Shigella and Campylobacter strains were isolated from stool specimens from 6,278 patients, presenting to the Abbassia Fever Hospital, Cairo, Egypt, with acute enteric infections. Salmonella predominated, totalling 465 isolates, followed by Shigella with 258 isolates, and Campylobacter with 146 isolates. Of the Shigella isolates, 124 were Shigella flexneri, 49 were S. sonnei, 47 were S. dysenteriae (mainly serotype 1, 2, and 3), and 38 were S. boydii. Campylobacter spp. comprised 92 Campylobacter jejuni and 54 C. coli isolates. Isolation of Salmonella was highest during the months of February-March, June-July, and October-November, while that of Shigella was maximal from July to October. Isolation of Campylobacter increased during May-June and again during August-October. Although Salmonella was sensitive to amikacin, aztreonam, ceftriaxone, and nalidixic acid, it was, however, resistant to erythromycin, streptomycin, ampicillin, chloramphenicol, and tetracycline. Shigella (> 80%) was sensitive to amikacin, ceftriaxone, cephalothin, sulphamethoxazole-trimethoprim (except S. sonnei), aztreonam, and nalidixic acid. Resistance (> 50%) was noted only for ampicillin, chloramphenicol, and tetracycline. C. jejuni and C. coli were resistant to cephalothin, aztreonam, and streptomycin. Some of the above antibiotics were employed to characterize the Egyptian isolates, but did not have any clinical utility in the treatment of diarrhoea. Significant differences (p < 0.05) were observed in the resistance profiles of Shigella and Salmonella between late 1980s and early 1990s. The results suggest the use of fluoroquinolones or a third-generation cephalosporin as an empirical treatment of enteric diseases. However, alternative control strategies, including the aggressive development of broadly protective vaccines, may be more effective approaches to curbing morbidity and mortality due to acute enteric infections.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacterial Infections/microbiology , Campylobacter/isolation & purification , Diarrhea/microbiology , Salmonella/isolation & purification , Shigella/isolation & purification , Adolescent , Adult , Anti-Bacterial Agents/therapeutic use , Bacterial Infections/drug therapy , Bacterial Infections/epidemiology , Campylobacter/drug effects , Campylobacter/growth & development , Child , Child, Preschool , Diarrhea/drug therapy , Diarrhea/epidemiology , Drug Resistance, Microbial , Egypt/epidemiology , Feces/microbiology , Female , Humans , Male , Microbial Sensitivity Tests , Salmonella/drug effects , Salmonella/growth & development , Seasons , Shigella/drug effects , Shigella/growth & development
15.
Toxicon ; 38(3): 337-46, 2000 Mar.
Article in English | MEDLINE | ID: mdl-10669023

ABSTRACT

Many strains of Salmonella typhimurium studied in our lab demonstrated marked differences in the pathogenicity for guinea pig, chicken and Hela cells. As a result, a pathogenic strain of S. typhimurium, strain 9SR2, was evaluated for lipophilic components that may be associated with virulence using gas chromatography/mass spectrometry. The hydroxylated fatty acids 2-hydroxytetradecanoic acid (2-OH-14:0) and 3-hydroxytetradecanoic acid (3-OH-14:0) often present in lipid A, a potent endotoxin, were observed as their methyl esters. The cyclic fatty acids methylene-hexadecanoic acid (C17delta) and methyleneoctadecanoic acid (C19delta) also were detected. The nephrotoxic and neurotoxic diterpenoid resin acid, dehydroabietic acid, was observed for the first time from S. typhimurium in both the total lipid and diglyceride fractions and determined as its methyl ester at m/z 314.2246. Due to its previously established toxicity, dehydroabietic acid may be a factor associated with virulence of S. typhimurium.


Subject(s)
Abietanes , Diterpenes/metabolism , Diterpenes/toxicity , Salmonella typhimurium/metabolism , Animals , Chickens , Fatty Acids/isolation & purification , Fatty Acids/toxicity , Freeze Drying , Gas Chromatography-Mass Spectrometry , Guinea Pigs , HeLa Cells , Humans , Hydrolysis , Lipids/isolation & purification , Salmonella typhimurium/chemistry , Salmonella typhimurium/pathogenicity , Virulence
16.
Am J Trop Med Hyg ; 61(6): 904-8, 1999 Dec.
Article in English | MEDLINE | ID: mdl-10674668

ABSTRACT

Acute gastroenteritis is a potential cause of substantial morbidity in U.S. military personnel during deployment. This study investigated the microbial causes of diarrhea in U.S. troops on exercises in Southeast Asia aboard the U.S.S. Germantown from March through May 1996. A total of 49 (7%) patients with diarrhea reported to sick call during a 3-month deployment involving 721 personnel. Diarrheal samples from 49 patients were subjected to bacterial and parasitologic examination, but sufficient samples from only 47 of 49 were available for analysis of the presence of Norwalk-like virus (NLV). Of the 49 diarrhea cases, 10 (20.4%) appeared to be due to bacterial etiology alone, 10 (20.4%) due to bacteria and the prototype Taunton agent (TNA), 11 (22.4%) due to TNA only, and 4 (8.0%) due to parasites. Norwalk-like virus RNA was present in 21 (45%) of 47 stool samples from the diarrhea cases, 10 with bacterial etiologies and 11 without bacterial or parasitic etiologies. No pathogen was detected in 14 (29%) of the cases. Four of the controls showed the presence of parasitic organisms. Of the 11 cases in which enterotoxigenic Escherichia coli was isolated, 8 were positive for colonization factor antigen (CFA/IV), and 3 were CFA-negative. The bacterial pathogens tested were all susceptible to gentamicin, and furadantin, but were resistant to ceftriaxone and norfloxacin, including 75% of the Campylobacter spp. These data support the view that the major cause of diarrhea for troops deployed in this geographic area is most likely NLVs.


Subject(s)
Caliciviridae Infections/epidemiology , Diarrhea/microbiology , Gastroenteritis/microbiology , Military Personnel , Norwalk virus/isolation & purification , Acute Disease , Diarrhea/epidemiology , Diarrhea/parasitology , Enzyme-Linked Immunosorbent Assay , Feces/microbiology , Feces/parasitology , Gastroenteritis/epidemiology , Gastroenteritis/parasitology , Humans , Incidence , Norwalk virus/genetics , RNA, Viral/genetics , RNA, Viral/isolation & purification , Reverse Transcriptase Polymerase Chain Reaction , Ships , United States/epidemiology
17.
Appl Environ Microbiol ; 64(1): 363-5, 1998 Jan.
Article in English | MEDLINE | ID: mdl-9435091

ABSTRACT

Differential sensitivity for the release of PCR-detectable genomic DNA upon boiling in water is reported for 45 Campylobacter jejuni and Campylobacter coli strains isolated in Egypt. All of the strains released PCR-detectable DNA when treated with proteinase K and sodium dodecyl sulfate. When DNA was extracted from these strains by boiling in water, nine (20%) of the strains were PCR negative or resistant to boiling, suggesting the presence of boiling-sensitive and boiling-resistant phenotypes.


Subject(s)
Campylobacter coli/isolation & purification , Campylobacter jejuni/isolation & purification , DNA, Bacterial/analysis , DNA, Bacterial/isolation & purification , Heating , Polymerase Chain Reaction/methods , Campylobacter coli/classification , Campylobacter coli/physiology , Campylobacter jejuni/classification , Campylobacter jejuni/physiology , Egypt , Endopeptidase K/pharmacology , Sodium Dodecyl Sulfate/pharmacology , Water
18.
J Egypt Public Health Assoc ; 73(1-2): 1-10, 1998.
Article in English | MEDLINE | ID: mdl-17249207

ABSTRACT

Twenty four Campylobacter jejuni and coli isolates obtained from Egyptian children were characterized using restriction fragment length polymorphism (RFLP) of flagellin genes and polyacrylamide gel electrophoresis of whole cell and glycine-extracted proteins. The isolates were found to fall into nine polymorphism groups, eight of which were reported previously in Egypt but one group displayed by 3 isolates represented a new group that was not reported before. Furthermore, the relative prevalence of polymorphic groups in the population studied is different from that reported previously. Analysis of whole-cell and acid glycine-extracted proteins showed that the profiles of these isolates are typical profiles of Campylobacters isolated from other humans.


Subject(s)
Campylobacter coli/genetics , Campylobacter jejuni/genetics , Genes, Bacterial , Campylobacter coli/isolation & purification , Campylobacter jejuni/isolation & purification , Child , Egypt , Electrophoresis, Polyacrylamide Gel , Flagellin/genetics , Humans , Polymorphism, Restriction Fragment Length
19.
Clin Diagn Lab Immunol ; 4(5): 536-9, 1997 Sep.
Article in English | MEDLINE | ID: mdl-9302201

ABSTRACT

Serum and stool samples were collected from 128 individuals: 96 diarrhea patients and 32 apparently healthy controls. Stool specimens were cultured for enteric bacterial pathogens, while sera were screened by enzyme-linked immunosorbent assay for Campylobacter jejuni-reactive antibodies. Of 28 diarrhea patients who demonstrated C. jejuni-reactive antibodies (titers, > 100), 14 were culture positive for this organism. The 32 healthy controls showed significantly lower antibody titers (P < 0.05) with the exception of 10 subjects who were culture positive for C. jejuni and had reactive immunoglobulin M (IgM) (6 subjects) and IgG (7 subjects). IgA was not detected in those 10 individuals (asymptomatic). Avidity was expressed as the thiocyanate ion concentration required to inhibit 50% of the bound antibodies. The avidity was higher in symptomatic patients than asymptomatic healthy controls. IgG was less avid (0.92 M) compared to IgM (0.1 M) and IgA (1.1 M), with no correlation between antibody titer and avidity. However, the thiocyanate ion concentration required for the complete inhibition of IgG (5 M)-bound antibodies was higher than that of IgA (2 M) and IgM (3 M). This study also shows that C. jejuni antibodies were variably cross-reactive with Escherichia coli, Shigella flexneri, Shigella sonnei, and Neisseria meningitidis in addition to Campylobacter coli and Campylobacter rectus.


Subject(s)
Antigens, Bacterial/analysis , Campylobacter Infections/immunology , Campylobacter jejuni/immunology , Diarrhea/immunology , Antigen-Antibody Reactions , Developing Countries , Diarrhea/microbiology , Enzyme-Linked Immunosorbent Assay , Humans , Immunoglobulin A/analysis , Immunoglobulin G/analysis , Immunoglobulin M/analysis
20.
Mil Med ; 162(6): 396-400, 1997 Jun.
Article in English | MEDLINE | ID: mdl-9183160

ABSTRACT

This study investigated the microbial causes of diarrheal disease among U.S. troops deployed near Alexandria, Egypt, during October 1995. Bacterial causes associated with 19 cases of diarrhea included: enterotoxigenic Escherichia coli (ETEC), 42% (21% heat-stable, 11% heat-labile, and 11% heat-stable/ heat-labile producers); enteropathogenic E. coli (5.3%); and enteroadherent E. coli (42%). Four cases of diarrhea were associated with enteroaggregative E. coli based on probe analysis for enteroaggregative heat-stable enterotoxin 1. Protozoan causes included; Entamoeba histolytica (11%), E. hartmanni (5%), E. nana (5%), Blastocystis hominis (5%), Chilomastix mesnili (11%), Dientamoeba fragilis (5%), Entamoeba coli (5%), and Cryptosporidium (5%). Shigella, Aeromonas, Plesiomonas, Vibrio, Campylobacter, and Salmonella were not detected. Of the eight ETEC cases, one was colonization factor antigen (CFA)/I only, one was both CFA/I and CFA/III, three were CFA/II, two were CFA/IV, and two were CFA-negative. Antibiograms of the ETEC and enteroadherent E. coli strains showed that all isolates were susceptible to norfloxacin, ciprofloxacin, and nalidixic acid but resistant to ampicillin, tetracycline, chloramphenicol, and sulfamethoxazole.


Subject(s)
Diarrhea/microbiology , Fimbriae Proteins , Military Personnel , Ampicillin Resistance , Animals , Anti-Infective Agents/therapeutic use , Antigens, Bacterial/analysis , Bacterial Proteins/analysis , Blastocystis Infections/diagnosis , Blastocystis hominis/isolation & purification , Chloramphenicol Resistance , Ciprofloxacin/therapeutic use , Cryptosporidiosis/diagnosis , Diarrhea/parasitology , Dientamoebiasis/diagnosis , Dysentery, Amebic/diagnosis , Egypt , Entamoeba/classification , Entamoeba histolytica/isolation & purification , Escherichia coli/classification , Escherichia coli/immunology , Escherichia coli Infections/diagnosis , Eukaryota , Humans , Nalidixic Acid/therapeutic use , Norfloxacin/therapeutic use , Pili, Sex/immunology , Protozoan Infections/diagnosis , Tetracycline Resistance , United States
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