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1.
Plant Physiol Biochem ; 210: 108610, 2024 May.
Article in English | MEDLINE | ID: mdl-38615447

ABSTRACT

In the face of the formidable environmental challenges precipitated by the ongoing climate change, Plant Growth-Promoting Bacteria (PGPB) are gaining widespread acknowledgement for their potential as biofertilizers, biocontrol agents, and microbial inoculants. However, a knowledge gap pertains to the ability of PGPB to improve stress tolerance in forestry species via cross-inoculation. To address this gap, the current investigation centres on PGPBs, namely, Acinetobacter johnsonii, Cronobacter muytjensii, and Priestia endophytica, selected from the phyllosphere of robust and healthy plants thriving in the face of stress-inducing conditions. These strains were selected based on their demonstrated adaptability to saline, arid, and nitrogen-deficient environments. The utilization of PGPB treatment resulted in an improvement of stomatal conductance (gs) and transpiration rate (E) in poplar plants exposed to both salt and drought stress. It also induced an increase in essential biochemical components such as proline (PRO), catalase (CAT), peroxidase (POD), and superoxide dismutase (SOD). These reactions were accompanied by a decrease in leaf malonaldehyde (MDA) content and electrolyte leakage (EL). Furthermore, the PGPB treatment demonstrated a notable enhancement in nutrient absorption, particularly nitrogen and carbon, achieved through the solubilization of nutrients. The estimation of canopy temperature via thermal imaging proved to be an efficient method for distinguishing stress reactions in poplar than conventional temperature recording techniques. In summation, the utilization of PGPB especially Cronobacter muytjensii in this study, yielded profound improvements in the stress tolerance of poplar plants, manifesting in reduced membrane lipid peroxidation, enhanced photosynthesis, and bolstered antioxidant capacity within the leaves.


Subject(s)
Populus , Stress, Physiological , Populus/microbiology , Populus/physiology , Endophytes/physiology , Plant Leaves/metabolism , Droughts , Proline/metabolism , Adaptation, Physiological , Acinetobacter/physiology
2.
Biol Methods Protoc ; 8(1): bpad039, 2023.
Article in English | MEDLINE | ID: mdl-38116323

ABSTRACT

Shorea robusta (Dipterocarpaceae), commonly known as Sal, is an economically and culturally important timber species, known to contain a wide spectrum of polyphenols, polysaccharides, and other secondary metabolites in the tissues, which can interfere with the extraction of high-quality genomic DNA. In order to screen simple sequence repeat (SSR) markers and carry out other DNA-based analyses for this species in our laboratory, a high-throughput DNA extraction methodology was needed. Hence, we have optimized a simple, rapid, safe, and reliable high-throughput protocol for DNA extraction suitable for both fresh and dry leaves. The standardized protocol delivered good DNA yield of ∼1500 µg from 1 g of leaf tissue, with purity indicated by a 260 nm/280 nm absorbance ratio ranging from 1.70 to 1.91, which validated the suitability of extracted DNA and revealed reduced levels of contaminants. Additionally, the protocol that we developed was found to be suitable for polymerase chain reaction (PCR) amplification using microsatellite markers. Genome-wide characterization with SSR markers has been established in S. robusta, which further validates the protocol and its usefulness in DNA-based studies across the genus and/or family.

3.
World J Microbiol Biotechnol ; 40(1): 15, 2023 Nov 17.
Article in English | MEDLINE | ID: mdl-37975907

ABSTRACT

Populus deltoides is one of the most favored cash crops in northern India. Thus, accurate identification of pathogens affecting P. deltoides is a critical step in finding or developing effective control measures. In June 2020, symptoms of a leaf blight disease were observed on P. deltoides trees planted at Forest Research Institute, Dehradun, India. Calonectria-like fungal isolates were consistently isolated from the infected leaf samples. Morphological features coupled with phylogenetic analysis of combined partial actin (act), calmodulin (cmdA), histone (his3), translation elongation factor 1-alpha (tef1) and ß-tubulin (tub2) gene regions of two fungal isolates confirmed a novel species, which is described and illustrated here as Calonectria populi sp. nov. Symptoms similar to those observed in natural conditions were caused by both the isolates on P. deltoides clone AM109 in detached leaf assays and glasshouse inoculation experiments. Finally, Koch's postulates were established by re-isolation and re-identification of the pathogen from the inoculated leaves. This work is the first to confirm a new leaf blight disease of P. deltoides caused by C. populi sp. nov. in India and worldwide.


Subject(s)
Hypocreales , Populus , Phylogeny , Actins , Biological Assay , India
4.
Heliyon ; 9(9): e19945, 2023 Sep.
Article in English | MEDLINE | ID: mdl-37809790

ABSTRACT

To reduce costs and improve high-temperature performance in Advanced Ultra Super Critical (AUSC) boilers, it is necessary to weld austenitic steel to Inconel alloy. In this study, the autogenous tungsten inert gas (TIG) welding process was used to join Alloy 617 and an austenitic AISI 304H steel plate of thickness 5 mm. Microstructural analysis showed that the microstructure formation was uneven along the weldments, with columnar and cellular dendrites near the interface while the central area of the weld exhibited a combination of columnar, cellular, and equiaxed dendrites. The use of energy dispersive spectroscopy and electron probe micro-analysis unveiled the presence of an unmixed layer at the interface between the weld and AISI 304H steel. Furthermore, a notable variation in the concentration of alloying elements such as Fe, Cr, Ni, Co, and Mo was observed. Within the weld metal, inter-dendritic areas showed the presence of precipitates rich in Cr, Ti, and Mo. Meanwhile, the heat-affected zone (HAZ) of Alloy 617 exhibited the presence of phases like Cr and Mo-rich M23C6 as well as Mo-rich M6C. Hardness tests showed non-uniform hardness along the weldments, with a hardness of 199 ± 6 HV in the weld metal and 225 ± 4 HV in Alloy 617 HAZ, and 207 ± 7 HV in AISI 304H HAZ. The Mo and Cr segregation in the inter-dendritic spaces led to a decline in the tensile properties of the welded parts and resulted in failure from the region of the weld metal.

5.
Materials (Basel) ; 16(17)2023 Aug 28.
Article in English | MEDLINE | ID: mdl-37687573

ABSTRACT

This study explores the high-temperature (HT) tensile rupture characteristics of a dissimilar gas-tungsten-arc-welded (GTAW) joint between P92 steel and Alloy 617, fabricated using ER62S-B9 and ERNiCrCoMo-1 fillers. The high-temperature tensile tests were performed at elevated temperatures of 550 °C and 650 °C. An optical microscope (OM) and a field emission scanning electron microscope (FESEM) were utilized to characterize the joint. The high-temperature test results indicated that the specimen failed at the P92 base metal/intercritical heat-affected zone (ICHAZ) rather than the weld metal for the ERNiCrCoMo-1(IN617) filler. This finding confirmed the suitability of the joint for use in the Indian advanced ultra-supercritical (A-USC) program. The fracture surface morphology and presence of precipitates were analysed using an SEM equipped with energy dispersive spectroscopy (EDS). The appearance of the dimples and voids confirmed that both welded fillers underwent ductile-dominant fracture. EDS analysis revealed the presence of Cr-rich M23C6 phases, which was confirmed on the fracture surface of the ER62S-B9 weld (P92-weld). The hardness plot was analysed both in the as-welded condition and after the fracture.

6.
Front Plant Sci ; 14: 1231676, 2023.
Article in English | MEDLINE | ID: mdl-37692412

ABSTRACT

Turmeric (Curcuma longa L.), a significant commercial crop of the Indian subcontinent is widely used as a condiment, natural dye, and as a cure for different ailments. Various bioactive compounds such as turmerones and curcuminoids have been isolated from C. longa that have shown remarkable medicinal activity against various ailments. However, reduced soil fertility, climatic variations, rapid urbanization, and enhanced food demand, pose a multifaceted challenge to the current agricultural practices of C. longa. Plant growth-promoting microbes play a vital role in plant growth and development by regulating primary and secondary metabolite production. Rhizospheric associations are complex species-specific interconnections of different microbiota with a plant that sustain soil health and promote plant growth through nutrient acquisition, nitrogen fixation, phosphate availability, phytohormone production, and antimicrobial activities. An elaborative study of microbiota associated with the roots of C. longa is essential for rhizospheric engineering as there is a huge potential to develop novel products based on microbial consortium formulations and elicitors to improve plant health, stress tolerance, and the production of secondary metabolites such as curcumin. Primarily, the purpose of this review is to implicate the rhizospheric microbial flora as probiotics influencing overall C. longa health, development, and survival for an increase in biomass, enhanced yield of secondary metabolites, and sustainable crop production.

7.
Heliyon ; 9(8): e18959, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37636414

ABSTRACT

The objective of the current study was to analyse the microstructure, mechanical characteristics, and residual stresses of a dissimilar welded joint (DWJ) made of P92 steel and the Inconel alloy 617 (IN617) using the gas tungsten arc welding (GTAW) method. The ERNiCr-3 filler was selected to produce the conventional V groove (VG) and narrow V groove (NVG) butt joint. The filler deficient zones in the weldments, such as the filler deficient beach, i.e. unmixed zone (UZ), peninsula, and island, as well as the distinct heat-affected zone (HAZ), were visible near the interface of ERNiCr-3 filler weld and P92 steel due to the distinct differences in the chemical composition, microstructure, and mechanical properties between the filler and P92 base metal (BM). A very narrow partial melted zone (PMZ) and almost negligible UZ and HAZ were noticed at the interface of IN617 and ERNiCr-3 weld metal and it occurred mainly due to the similarity in microstructure and melting point. The austenitic microstructure of ERNiCr-3 filler weld was accompanied by precipitates enriched with Ti and Nb along with the inter-dendritic space. At room temperature, the mechanical properties of both the groove joints were evaluated, and the test results indicated that the welded joint satisfied the standard requirements for AUSC power plants' boiler applications. The tensile test results showed the failure from ERNiCr-3 filler weld with a tensile strength of 627 ± 2 MPa and 636 ± 3 MPa for VG and NVG welded joints, respectively. A poor weld metal impact toughness in comparison to the BMs was attributed to the presence of the brittle Ti(C, N) and Nb(C) particles in the interdendritic space. The impact toughness for the NVG weld joint was measured higher than for the VG weld joint. A significant hardness deviation was measured along the weldments that might be due to heterogeneous microstructure, i.e. UZ, HAZ, delta ferrite, and weld metal. To impart the ductility and temper the martensite in P92 HAZ, post-weld heat treatment (PWHT) was also performed, and a studied their effect on microstructure evolution across the weldments and mechanical properties. Groove design also showed a significant effect on residual stress variation. The work highlights the groove geometry, welding procedure, evolution of the microstructure along the weldments, mechanical characteristics, and residual stress variation of DWJ of P92 steel and IN617 alloy. In comparison to conventional VG joints, the NVG joints exhibited superior mechanical properties and lower residual stress values.

8.
J Plant Res ; 136(4): 483-499, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37140755

ABSTRACT

The present study was conducted to understand the key ecological and biological questions of conservation importance in Drepanostachyum falcatum which aimed to map potential distribution in the western Himalayas and decipher spatial genetic structure. Eco-distribution maps were generated through ecological niche modelling using the Maximum Entropy (MaxEnt) algorithm implemented with 228 geocoordinates of species presence and 12 bioclimatic variables. Concomitantly, 26 natural populations in the western Himalayas were genetically analysed using ten genomic sequence-tagged microsatellite (STMS) markers. Model-derived distribution was adequately supported with appropriate statistical measures, such as area under the 'receiver operating characteristics (ROC)' curve (AUC; 0.917 ± 0.034)", Kappa (K; 0.418), normalized mutual information (NMI; 0.673) and true skill statistic (TSS; 0.715). Further, Jackknife test and response curves showed that the precipitation (pre- and post-monsoon) and temperature (average throughout the year and pre-monsoon) maximize the probabilistic distribution of D. falcatum. We recorded a wide and abundant (4096.86 km2) distribution of D. falcatum in the western Himalayas with maximum occurrence at 1500 to 2500 m asl. Furthermore, marker analysis exemplified high gene diversity with low genetic differentiation in D. falcatum. Relatively, the populations of Uttarakhand are more genetically diverse than Himachal Pradesh, whereas within the Uttarakhand, the Garhwal region captured a higher allelic diversity than Kumaon. Clustering and structure analysis indicated two major gene pools, where genetic admixing appeared to be controlled by long-distance gene flow, horizontal geographical distance, aspect, and precipitation. Both the species distribution map and population genetic structure derived herein may serve as valuable resources for conservation and management of Himalayan hill bamboos.


Subject(s)
Ecosystem , Poaceae , Geography , Microsatellite Repeats/genetics , Genetics, Population
9.
Funct Integr Genomics ; 23(1): 51, 2023 Jan 28.
Article in English | MEDLINE | ID: mdl-36707443

ABSTRACT

Tropical rainforests in Southeast Asia are enriched by multifarious biota dominated by Dipterocarpaceae. In this family, Shorea robusta is an ecologically sensitive and economically important timber species whose genomic diversity and phylogeny remain understudied due to lack of datasets on genetic resources. Smattering availability of molecular markers impedes population genetic studies indicating a necessity to develop genomic databases and species-specific markers in S. robusta. Accordingly, the present study focused on fostering de novo low-depth genome sequencing, identification of reliable microsatellites markers, and their validation in various populations of S. robusta in Uttarakhand Himalayas. With 69.88 million raw reads assembled into 1,97,489 contigs (read mapped to 93.2%) and a genome size of 357.11 Mb (29 × coverage), Illumina paired-end sequencing technology arranged a library of sequence data of ~ 10 gigabases (Gb). From 57,702 microsatellite repeats, a total of 35,049 simple sequence repeat (SSR) primer pairs were developed. Afterward, among randomly selected 60 primer pairs, 50 showed successful amplification and 24 were found as polymorphic. Out of which, nine polymorphic loci were further used for genetic analysis in 16 genotypes each from three different geographical locations of Uttarakhand (India). Prominently, the average number of alleles per locus (Na), observed heterozygosity (Ho), expected heterozygosity (He), and the polymorphism information content (PIC) were recorded as 2.44, 0.324, 0.277 and 0.252, respectively. The accessibility of sequence information and novel SSR markers potentially enriches the current knowledge of the genomic background for S. robusta and to be utilized in various genetic studies in species under tribe Shoreae.


Subject(s)
Dipterocarpaceae , Genome, Plant , Dipterocarpaceae/genetics , Microsatellite Repeats , Polymorphism, Genetic
10.
Crit Rev Biotechnol ; 43(6): 884-903, 2023 Sep.
Article in English | MEDLINE | ID: mdl-35968912

ABSTRACT

Dangers confronting forest ecosystems are many and the strength of these biological systems is deteriorating, thus substantially affecting tree physiology, phenology, and growth. The establishment of genetically engineered trees into degraded woodlands, which would be adaptive to changing climate, could help in subsiding ecological threats and bring new prospects. This should not be resisted due to the apprehension of transgene dispersal in forests. Consequently, it is important to have a deep insight into the genetic structure and phenotypic limits of the reproductive capability of tree stands/population(s) to endure tolerance and survival. Importantly, for a better understanding of genes and their functional mechanisms, gene editing (GeEd) technology is an excellent molecular tool to unravel adaptation progressions. Therefore, GeEd could be harnessed for resolving the allelic interactions for the creation of gene diversity, and transgene dispersal may be alleviated among the population or species in different bioclimatic zones around the globe. This review highlights the potential of the CRISPR/Cas tools in genomic, transcriptomic, and epigenomic-based assorted and programmable alterations of genes in trees that might be able to fix the trait-specific gene function. Also, we have discussed the application of diverse forms of GeEd to genetically improve several traits, such as wood density, phytochemical constituents, biotic and abiotic stress tolerance, and photosynthetic efficiency in trees. We believe that the technology encourages fundamental research in the forestry sector besides addressing key aspects, which might fasten tree breeding and germplasm improvement programs worldwide.


Subject(s)
Ecosystem , Gene Editing , Wood , CRISPR-Cas Systems/genetics , Forests , Trees/genetics , Genome, Plant/genetics
11.
ACS Omega ; 7(37): 33572-33586, 2022 Sep 20.
Article in English | MEDLINE | ID: mdl-36157782

ABSTRACT

This study first reports on the tetracycline photodegradation with the synthesized heterostructured titanium oxide nanotubes coupled with cuprous oxide photocatalyst. The large surface area and more active sites on TiO2 nanotubes with a reduced band gap (coupling of Cu2O) provide faster photodegradation of tetracycline under visible light conditions. Cytotoxicity experiments performed on the RAW 264.7 (mouse macrophage) and THP-1 (human monocytes) cell lines of tetracycline and the photodegraded products of tetracycline as well as quenching experiments were also performed. The effects of different parameters like pH, photocatalyst loading concentration, cuprous oxide concentration, and tetracycline load on the photodegradation rate were investigated. With an enhanced surface area of nanotubes and a reduced band gap of 2.58 eV, 1.5 g/L concentration of 10% C-TAC showed the highest efficiency of visible-light-driven photodegradation (∼100% photodegradation rate in 60 min) of tetracycline at pH 5, 7, and 9. The photodegradation efficiency is not depleted up to five consecutive batch cycles. Quenching experiments confirmed that superoxide radicals and hydroxyl radicals are the most involved reactive species in the photodegradation of tetracycline, while valance band electrons are the least involved reactive species. The cytotoxicity percentage of tetracycline and its degraded products on RAW 264.7 (-0.932) as well as THP-1 (-0.931) showed a negative correlation with the degradation percentage with a p-value of 0.01. The toxicity-free effluent of photodegradation suggests the application of the synthesized photocatalyst in wastewater treatment.

12.
Natl Acad Sci Lett ; 44(6): 571-574, 2021.
Article in English | MEDLINE | ID: mdl-34305234

ABSTRACT

Corona virus disease 2019 (COVID-19) caused by corona virus SARS-CoV-2 is believed to be originated in Wuhan province of China, which has spread all over the world. It has severely impacted the social, cultural, educational, research and development programmes throughout the globe. Since the inception of various lifeforms on planet earth, forests' plays an important role in the evolutionary history of organisms and fitness persuades the existence of modern-day species in different ecosystems. The visible effect of pandemic leads to the lockdown with positive implications on the earth biosphere as a whole; while on other hand, lockdown seized and reduced the urbanization and developmental projects, especially the research and development progress in the field of forestry and allied sciences. This viewpoint addresses key questions and point-out with detailed exploration of the problem - as how COVID-19 pandemic impacts forestry research all over the world? We also suggest possible solutions, and define the role and association of disciplines, such as bioinformatics, remote sensing and statistical modules along with previously explored and collected field data as a sustainable measure to resolve the problems of forestry sector of this mighty challenge.

13.
Physiol Mol Biol Plants ; 27(7): 1623-1638, 2021 Jul.
Article in English | MEDLINE | ID: mdl-34305342

ABSTRACT

Proteaceae, a largely southern hemisphere family consisting of 80 genera distributed in Australia and southern Africa as its centres of greatest diversity, also extends well in northern and southern America. Under this family, Grevillea robusta is a fast-growing species got popularity in farm and avenue plantations. Despite the ecological and economic importance, the species has not yet been investigated for its genetic improvement and genome-based studies. Only a few molecular markers are available for the species or its close relatives, which hinders  genomic and population genetics studies. Genetic markers have been intensively applied for the main strategies in breeding programs, especially for the economically important traits. Hence, it is of utmost priority to develop genomic database resources and species-specific markers for studying quantitative genetics in G. robusta. Given this, the present study aimed to develop de novo genome sequencing, robust microsatellites markers, sequence annotation and their validation in different stands of G. robusta in northern India. Library preparation and sequencing were carried out using Illumina paired-end sequencing technology. Approximately, ten gigabases (Gb) sequence data with 70.87 million raw reads assembled into 425,923 contigs (read mapped to 76.48%) comprising 455 Mb genome size (23 × coverage) generated through genome skimming approach. In total, 9421 simple sequence repeat (SSR) primer pairs were successfully designed from 13,335 microsatellite repeats. Afterward, a subset of 161 primer pairs was randomly selected, synthesized and validated. All the tested primers showed successful amplification but only 13 showed polymorphisms. The polymorphic SSRs were further used to estimate the measures of genetic diversity in 12 genotypes each from the states of Punjab, Haryana, Himachal Pradesh and Uttarakhand. Importantly, the average number of alleles (Na), observed heterozygosity (Ho), expected heterozygosity (He), and the polymorphism information content (PIC) were recorded as 2.69, 0.356, 0.557 and 0.388, respectively. The availability of sequence information and newly developed SSR markers could potentially be used in various genetic analyses and improvements through molecular breeding strategies for G. robusta. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s12298-021-01035-w.

14.
Front Genet ; 11: 1001, 2020.
Article in English | MEDLINE | ID: mdl-33193586

ABSTRACT

Fusarium wilt (FW) disease is the key constraint to grain legume production worldwide. The projected climate change is likely to exacerbate the current scenario. Of the various plant protection measures, genetic improvement of the disease resistance of crop cultivars remains the most economic, straightforward and environmental-friendly option to mitigate the risk. We begin with a brief recap of the classical genetic efforts that provided first insights into the genetic determinants controlling plant response to different races of FW pathogen in grain legumes. Subsequent technological breakthroughs like sequencing technologies have enhanced our understanding of the genetic basis of both plant resistance and pathogenicity. We present noteworthy examples of targeted improvement of plant resistance using genomics-assisted approaches. In parallel, modern functional genomic tools like RNA-seq are playing a greater role in illuminating the various aspects of plant-pathogen interaction. Further, proteomics and metabolomics have also been leveraged in recent years to reveal molecular players and various signaling pathways and complex networks participating in host-pathogen interaction. Finally, we present a perspective on the challenges and limitations of high-throughput phenotyping and emerging breeding approaches to expeditiously develop FW-resistant cultivars under the changing climate.

15.
3 Biotech ; 10(12): 534, 2020 Dec.
Article in English | MEDLINE | ID: mdl-33214981

ABSTRACT

The study was conducted to evaluate the discriminatory potential of selected chloroplast-based DNA barcode regions for identifying and resolving phylogeny of the Indian bamboos. Among 11 chloroplast markers screened, only four, namely matK, rbcL, psbK-I and rps16-trnQ showed successful amplification in 88 genotypes of 30 Indian bamboo taxa under Bambuseae and Arundinarieae tribes. A total of 244 sequences were generated for the four chloroplast regions. Tree-based analysis demonstrated that none of the tested regions successfully discriminated the taxa under Bambuseae tribe. Importantly, our highly concerned Himalayan temperate bamboo species under Arundinarieae tribe, were successfully discriminated by matK locus with high bootstrap support (>60%). Sequence comparisons revealed that the discriminatory power demonstrated by matK region actually lies in the few unique fixed nucleotides (UFNs) despite the overall DNA polymorphism. Although, rps16-trnQ region was found to be the most polymorphic and revealed high genetic divergence among different taxonomic levels, it could not successfully discriminated the taxa with strong statistical support. In a taxonomically difficult plant group like bamboos, whose genome is relatively more complex and has a slow rate of molecular evolution, it is difficult to get a universal marker. Further, highly variable barcode regions utilized in other species may not be informative, and thus, the development of DNA barcodes for different taxonomic levels, such as lineages or tribes could be a viable approach.

16.
Materials (Basel) ; 13(20)2020 Oct 11.
Article in English | MEDLINE | ID: mdl-33050548

ABSTRACT

The chromium nitride coating is a hard coating used to improve the sliding friction and wear behavior and is applied to engine components in various operating conditions even at an elevated temperature. In this study, chromium nitride was deposited by a physical vapor deposition process onto the cast iron substrate. All tribological tests were performed on linear reciprocating tribometer with a stroke length of 5 mm in a dry condition at variable temperature levels of 28 °C, 100 °C, 200 °C, and of 300 °C corresponding to loads of 10 N, 20 N, 30 N, and 40 N against the cylinder liner material. The worn surfaces of chromium nitride(CrN) coatings after friction tests were analyzed by scanning electron microscope (SEM) and energy-dispersive spectroscopy (EDS). The results showed that friction coefficients (COF) ranged from 0.93 to 0.34 from room temperature to 300 °C against the cylinder liner material as a counter-body of 6 mm in diameter; higher temperature results in the positive tribological performance of CrN, with at least 0.34 COF at 300 °C. The wear mechanisms of CrN and counter-body surfaces are abrasive wear accompanied by the slight oxidation. This study guides the wear behavior of cylinder liner coatings in an environment similar to the engine.

17.
Mol Biol Rep ; 47(9): 6997-7008, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32930932

ABSTRACT

Salvadoraceae constitutes ecologically imperative desert families of 3 genera-Azima, Dobera and Salvadora. Under genus Salvadora of this family, S. oleoides is a keystone species of socio-economic and medicinal value. This species naturally grows in the arid zones but currently experiencing severe fragmentation due to land use change and reduced regeneration, which may have resulted in the depletion of genetic diversity. Hence, it is up-most important to develop genomic resources for studying the population genetics in S. oleoides. This study aims to develop robust microsatellites markers, which were not yet reported in genus Salvodora due to lack of genome sequence information. We developed novel microsatellites markers in S. oleoides using Illumina paired-end sequencing technology. In total, 14,552 simple sequence repeat (SSR) markers were successfully designed from 21,055 microsatellite repeats detected in the 13 Gb raw sequence data. Afterwards, a subset of 101 SSRs were randomly selected and validated, 94 primers were successfully amplified and 34 showed polymorphisms. These SSRs were used to estimate the measures of genetic diversity in three natural populations of state Rajasthan and Gujarat. Importantly, average number of alleles (Na), observed heterozygosity (Ho), expected heterozygosity (He), and polymorphism information content (PIC) were recorded as 2.4, 0.529, 0.357, and 0.326, respectively. Furthermore, 15 primers were evaluated in S. persica for cross-transferability, and all were successfully amplified but only eight showed polymorphisms. This study has been conducted first time for S. oleoides and pioneer among the native species of arid-zone in India.


Subject(s)
DNA, Plant/genetics , Genome, Plant , Microsatellite Repeats , Polymorphism, Genetic , Salvadoraceae/genetics , High-Throughput Nucleotide Sequencing , Salvadoraceae/classification , Species Specificity
18.
Int J Biometeorol ; 64(9): 1629-1634, 2020 Sep.
Article in English | MEDLINE | ID: mdl-32415620

ABSTRACT

Populus deltoides is a fast-growing woody species possessing plethora of industrial applications. This species evolutionarily developed unisexual male and female catkin inflorescence on separate trees. Flowering usually occurs during early spring before the development of foliage, where buds appear near axils or at the extending shoots. In 2019, surveys were undertaken to study the flowering pattern of P. deltoides in the states of Punjab, Haryana, Uttar Pradesh and Uttarakhand in northern India. Interestingly, an anomalous flowering behaviour (appearance of off-season male catkins during autumn, i.e. October) was observed in a plantation trial at Kapurthala, Punjab. The male catkins were 2.7-3.1 ± 0.07 cm long and 0.3-0.5 ± 0.03 cm wide, which is significant for flowering and liberation of pollen grains. Preliminary results suggested that climatic factors, such as episodes of high or low temperature and the precipitation variation forcing the tree species to behave differently. Unearthing the climate-driven off-season flowering in other tree species alluded the stimulation of phytohormones, such as gibberellic and salicylic acid concentrations influencing the flowering time, therefore, needs further investigation in case of P. deltoides. Overall, this work provides early clues of changing climatic scenario altering the flowering pattern of a tropical forestry tree species.


Subject(s)
Populus , Climate Change , Flowers , India , Seasons , Trees
19.
Indian J Otolaryngol Head Neck Surg ; 71(3): 309-314, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31559196

ABSTRACT

It has become increasingly clear in the past decade that surgical management of OSAHS is most successfully managed with multilevel surgery (Cahali in Laryngoscope 113(11):1961-1968, 2003; Friedman et al. in Otolaryngol Head Neck Surg 131:89-100, 2004; Laryngoscope 114:441-449, 2004; Pang and Woodson in Otolaryngol Head Neck Surg 137(1):110-114, 2007; Li and Lee in Laryngoscope 119:2472-2477, 2009; Vicini et al. in Head Neck 36:77-78, 2014; Mantovani et al. in Acta Otorhinolaryngol Ital 32:48-53, 2012; Morgenthaler et al. in Sleep 30:519-529, 2007). In particular, drug-induced sleep endoscopy (DISE) has shown that the nose and soft palate are important anatomic components of obstruction in OSAHS and therefore should be treated as far as possible as a single stage procedure. The nasal patency being pivotal in the outcome of the sleep apnoea surgery. To ascertain the effectiveness and ease of carrying out multilevel single stage procedure in patients of obstructive sleep apnoea, and to use BARB sutures for relocation palatoplasty as a new technique to address level 2 collapse without excising much of soft palatal tissue. We have carried out a prospective study of 50 OSA (mild to severe) patients with nasal and retropalatal obstruction specifically without BOT or hypopharyngeal component of obstruction. The nasal component being treated with various procedures depending on the deformity or nature of obstruction and retropalatal component addressed by barbed relocation pharyngoplasty (BRP) being a relatively new procedure. We observed that nasal surgeries along with BRP can provide as an effective and safe option with very promising results. Adding BRP in the same stage with nasal surgery has been proved to be a simple, easy to learn, safe procedure with promising results in the management of OSA. Key points to be, the level of obstruction noted on DISE and proper patient selection can help us give the patients a good surgical result in a single stage procedure.

20.
Biotechnol Adv ; 32(8): 1410-28, 2014 Dec.
Article in English | MEDLINE | ID: mdl-25196916

ABSTRACT

Pulses are multipurpose crops for providing income, employment and food security in the underprivileged regions, notably the FAO-defined low-income food-deficit countries. Owing to their intrinsic ability to endure environmental adversities and the least input/management requirements, these crops remain central to subsistence farming. Given their pivotal role in rain-fed agriculture, substantial research has been invested to boost the productivity of these pulse crops. To this end, genomic tools and technologies have appeared as the compelling supplement to the conventional breeding. However, the progress in minor pulse crops including dry beans (Vigna spp.), lupins, lablab, lathyrus and vetches has remained unsatisfactory, hence these crops are often labeled as low profile or lesser researched. Nevertheless, recent scientific and technological breakthroughs particularly the next generation sequencing (NGS) are radically transforming the scenario of genomics and molecular breeding in these minor crops. NGS techniques have allowed de novo assembly of whole genomes in these orphan crops. Moreover, the availability of a reference genome sequence would promote re-sequencing of diverse genotypes to unlock allelic diversity at a genome-wide scale. In parallel, NGS has offered high-resolution genetic maps or more precisely, a robust genetic framework to implement whole-genome strategies for crop improvement. As has already been demonstrated in lupin, sequencing-based genotyping of the representative sample provided access to a number of functionally-relevant markers that could be deployed straight away in crop breeding programs. This article attempts to outline the recent progress made in genomics of these lesser explored pulse crops, and examines the prospects of genomics assisted integrated breeding to enhance and stabilize crop yields.


Subject(s)
Breeding/methods , Crops, Agricultural/genetics , Genomics/methods , Food Supply , Genome, Plant , High-Throughput Nucleotide Sequencing , Quantitative Trait Loci
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