Fishing effort dynamics around the Galápagos Marine Reserve as depicted by AIS data.

The waters around the Galápagos Marine Reserve (GMR) are important fishing grounds for authorized artisanal vessels fishing within the reserve as well as for national and foreign industrial fleets operating in the wider Ecuadorian Insular Exclusive Economic Zone (IEEZ). Although it was not originally designed for fisheries management, Automatic Identification System (AIS) data provides useful, open access, near real-time and high-resolution information that allows for increased monitoring, particularly around Marine Protected Areas (MPAs) and in Areas Beyond National Jurisdiction. This study uses AIS data provided by Global Fishing Watch to assess the spatial distribution and seasonal dynamics of fishing effort by vessel flag within the GMR and the IEEZ from 2012 to 2021. Based on kernel density estimation analysis, we determinate the core-use areas (50%) and spatial extent (95%) of fishing activities by fleets (Ecuadorian and foreign), gear types and seasons (warm, from December to May; and cold, from June to November). Our results show that the Ecuadorian fleet recorded the most observed fishing hours in the study area, with 32,829 hours in the IEEZ and 20,816 hours within the GMR. The foreign flags with the most observed fishing hours in the IEEZ were Panama (3,245 hours) and Nicaragua (2,468.5 hours), while in the GMR were the 'Unknown flag' (4,991.4 hours) and Panama (133.7 hours). Vessels fished employing different fishing gears, but the waters of the GMR and IEEZ were mostly targeted by tuna purse-seiners and drifting longlines. The spatial distribution of the fishing effort exhibits marked seasonal variability, likely influenced by seasonal migrations of target species such as tunas (e.g., Thunnus albacares, T. obesus and Katsuwonus pelamis), marlins (e.g., Makaira nigricans) and sharks (e.g., Alopias pelagicus). The collection and use of this type of spatial and seasonal information is an essential step to understand the dynamics of fishing activities in national waters and improve fisheries management, particularly in less studied areas and fisheries.

Genetic identification of three CITES-listed sharks using a paper-based Lab-on-a-Chip (LOC).

Threatened shark species are caught in large numbers by artisanal and commercial fisheries and traded globally. Monitoring both which shark species are caught and sold in fisheries, and the export of CITES-restricted products, are essential in reducing illegal fishing. Current methods for species identification rely on visual examination by experts or DNA barcoding techniques requiring specialist laboratory facilities and trained personnel. The need for specialist equipment and/or input from experts means many markets are currently not monitored. We have developed a paper-based Lab-on-a-Chip (LOC) to facilitate identification of three threatened and CITES-listed sharks, bigeye thresher (Alopias superciliosus), pelagic thresher (A. pelagicus) and shortfin mako shark (Isurus oxyrinchus) at market source. DNA was successfully extracted from shark meat and fin samples and combined with DNA amplification and visualisation using Loop Mediated Isothermal Amplification (LAMP) on the LOC. This resulted in the successful identification of the target species of sharks in under an hour, with a working positive and negative control. The LOC provided a simple "yes" or "no" result via a colour change from pink to yellow when one of the target species was present. The LOC serves as proof-of-concept (PoC) for field-based species identification as it does not require specialist facilities. It can be used by non-scientifically trained personnel, especially in areas where there are suspected high frequencies of mislabelling or for the identification of dried shark fins in seizures.

The impact of climate change on the distribution of Sphyrna lewini in the tropical eastern Pacific.

Variability and climate change due to anthropic influence have brought about alterations to marine ecosystems, that, in turn, have affected the physiology and metabolism of ectotherm species, such as the common hammerhead shark (Sphyrna lewini). However, the impact that climate variability may have on this species' distribution, particularly in the Eastern Tropical Pacific Marine Corridor, which is considered an area with great marine biodiversity, is unknown. The purpose of this research was to evaluate the effect of derivate impact of climate change on the oceanographic distribution of the hammerhead shark (Sphyrna lewini) in the Eastern Tropical Pacific Marine Corridor, contrasting the present and future scenarios for 2050. The methodology used was an ecological niche model based on the KUENM R package software that uses the maximum entropy algorithm (MaxEnt). The modelling was made for the year 2050 under RCP2.6 and RCP8.5 scenarios. A total of 952 models were made, out of which only one met the statistical parameters established as optimal, for future scenarios. The environmental suitability for S.lewini shows that this species would migrate to the south in the Chilean Pacific, associated with a possible warming that the equatorial zone will have and the possible cooling that the subtropical zone of the South Pacific will have by 2050, the product of changes in oceanographic dynamics.

Global collision-risk hotspots of marine traffic and the world's largest fish, the whale shark.

Marine traffic is increasing globally yet collisions with endangered megafauna such as whales, sea turtles, and planktivorous sharks go largely undetected or unreported. Collisions leading to mortality can have population-level consequences for endangered species. Hence, identifying simultaneous space use of megafauna and shipping throughout ranges may reveal as-yet-unknown spatial targets requiring conservation. However, global studies tracking megafauna and shipping occurrences are lacking. Here we combine satellite-tracked movements of the whale shark, Rhincodon typus, and vessel activity to show that 92% of sharks' horizontal space use and nearly 50% of vertical space use overlap with persistent large vessel (>300 gross tons) traffic. Collision-risk estimates correlated with reported whale shark mortality from ship strikes, indicating higher mortality in areas with greatest overlap. Hotspots of potential collision risk were evident in all major oceans, predominantly from overlap with cargo and tanker vessels, and were concentrated in gulf regions, where dense traffic co-occurred with seasonal shark movements. Nearly a third of whale shark hotspots overlapped with the highest collision-risk areas, with the last known locations of tracked sharks coinciding with busier shipping routes more often than expected. Depth-recording tags provided evidence for sinking, likely dead, whale sharks, suggesting substantial "cryptic" lethal ship strikes are possible, which could explain why whale shark population declines continue despite international protection and low fishing-induced mortality. Mitigation measures to reduce ship-strike risk should be considered to conserve this species and other ocean giants that are likely experiencing similar impacts from growing global vessel traffic.

A first assessment of the distribution and abundance of large pelagic species at Cocos Ridge seamounts (Eastern Tropical Pacific) using drifting pelagic baited remote cameras.

Understanding the link between seamounts and large pelagic species (LPS) may provide important insights for the conservation of these species in open water ecosystems. The seamounts along the Cocos Ridge in the Eastern Tropical Pacific (ETP) ocean are thought to be ecologically important aggregation sites for LPS when moving between Cocos Island (Costa Rica) and Galapagos Islands (Ecuador). However, to date, research efforts to quantify the abundance and distribution patterns of LPS beyond the borders of these two oceanic Marine Protected Areas (MPAs) have been limited. This study used drifting-pelagic baited remote underwater video stations (BRUVS) to investigate the distribution and relative abundance of LPS at Cocos Ridge seamounts. Our drifting-pelagic BRUVS recorded a total of 21 species including elasmobranchs, small and large teleosts, dolphins and one sea turtle; of which four species are currently threatened. Depth of seamount summit was the most significant driver for LPS richness and abundance which were significantly higher at shallow seamounts (< 400 m) compared to deeper ones (> 400m). Distance to nearest MPA was also a significant predictor for LPS abundance, which increased at increasing distances from the nearest MPA. Our results suggest that the Cocos Ridge seamounts, specifically Paramount and West Cocos which had the highest LPS richness and abundance, are important aggregation sites for LPS in the ETP. However, further research is still needed to demonstrate a positive association between LPS and Cocos Ridge seamounts. Our findings showed that drifting pelagic BRUVS are an effective tool to survey LPS in fully pelagic ecosystems of the ETP. This study represents the first step towards the standardization of this technique throughout the region.

State-space modeling reveals habitat perception of a small terrestrial mammal in a fragmented landscape.

Habitat loss is a major cause of species loss and is expected to increase. Loss of habitat is often associated with fragmentation of remaining habitat. Whether species can persist in fragmented landscapes may depend on their movement behavior, which determines their capability to respond flexibility to changes in habitat structure and spatial distribution of patches.Movement is frequently generalized to describe a total area used, or segmented to highlight resource use, often overlooking finer-scale individual behaviors. We applied hidden Markov models (HMM) to movement data from 26 eastern bettongs (Bettongia gaimardi) in fragmented landscapes. HMMs are able to identify distinct behavior states associated with different movement patterns and discover how these behaviors are associated with habitat features.Three distinct behavior states were identified and interpreted as denning, foraging, and fast-traveling. The probability of occurrence of each state, and of transitions between them, was predicted by variation in tree-canopy cover and understorey vegetation density. Denning was associated with woodland with low canopy cover but high vegetation density, foraging with high canopy cover but low vegetation density, and fast-traveling with low canopy cover and low vegetation density.Bettongs did move outside woodland patches, often fast-traveling through pasture and using smaller stands of trees as stepping stones between neighboring patches. Males were more likely to fast-travel and venture outside woodlands patches, while females concentrated their movement within woodland patches. Synthesis and applications: Our work demonstrates the value of using animal movement to understand how animals respond to variation in habitat structure, including fragmentation. Analysis using HMMs was able to characterize distinct habitat types needed for foraging and denning, and identify landscape features that facilitate movement between patches. Future work should extend the use of individual movement analyses to guide management of fragmented habitat in ways that support persistence of species potentially threatened by habitat loss.

Fish assemblages in three fringed mangrove bays of Santa Cruz Island, Galapagos Marine Reserve / Ensamblaje de peces en tres bahías con bordes de manglar en la Isla Santa Cruz, Reserva Marina de Galápagos

Abstract Mangrove-fringed bays are highly variable ecosystems that provide critical habitats for fish species. In this study we assessed the fish assemblage in three mangrove-fringed bays (Punta Rocafuerte, Saca Calzón and Garrapatero) in the Southeast side of Santa Cruz Island, Galapagos Marine Reserve. Using gillnets, we carried out a total of 108 fieldtrips from January 2010 to December 2011. A total of 1 773 bony and 740 cartilaginous fishes belonging to 26 species and 15 families were identified at the same sampling sites. Species richness was higher in the protected bay (Garrapatero) than in those open to fishing (Punta Rocafuerte, Saca Calzón). Blacktip sharks (Carcharhinus limbatus, n= 729), Thoburn's mullets (Mugil thoburni, n= 492), Peruvian mojarras (Diapterus peruvianus, n= 440), milkfish (Chanos chanos, n= 206) and the yellow fin mojarras (Gerres cinereus, n= 197) were the most common species across sites and season (cold and warm). The abundance of the most common species varied seasonally, with C. limbatus and C. chanos being more abundant in the warm season (December to April), and M. thoburni, C. limbatus and G. cinereus in the cold season (June to October). Temperature was the most important driver of abundance in C. limbatus and C. chanos, while salinity influenced Umbrina galapagorum. This study represents the first evaluation of the fish assemblage composition and dynamics in mangrove-fringed bays in the Galapagos Marine Reserve. Rev. Biol. Trop. 66(2): 674-687. Epub 2018 June 01.

Resumen Las bahías de manglar son ecosistemas muy variables que proveen hábitats críticos para especies de peces. En este estudio se evaluó los ensamblajes de peces de tres bahías de manglar (Punta Rocafuerte, Saca Calzón y Garrapatero) ubicadas en el sureste de la isla Santa Cruz, Reserva Marina de Galápagos. Usando redes de trasmallos iguales a los usados por la pesca artesanal, se llevaron a cabo un total de 108 salidas de campo entre enero 2010 y diciembre 2011. Un total 1 773 peces óseos y 740 peces cartilaginosos correspondiendo a 26 especies y 15 familias fueron capturados, identificados y liberados con vida. La riqueza de especies fue mayor en Garrapatero (sitio protegido) que en Punta Rocafuerte y Saca Cazón (sitios abiertos a la pesca). Las mayores capturas estuvieron representadas por el tiburón punta negra (Carcharhinus limbatus; n= 729), seguido la lisa rabo negro (Mugil thoburni; n= 492), la mojarra peruana (Diapterus peruvianus; n= 440), la diabla (Chanos chanos; n= 206) y la mojarra rayada (Gerres cinereus; n= 197). A pesar que éstas especies fueron consistentemente las más importantes a través de los sitios y temporadas (caliente y fría), se observó una mayor abundancia de C. limbatus y C. chanos durante la temporada caliente (enero a abril), y de M. thoburni, C. limbatus y G. cinereus durante la temporada fría (junio a octubre). La temperatura fue determinada como el factor más importante que influye en la abundancia de C. limbatus y C. Chanos, mientras la salinidad lo fue para Umbrina galapagorum. Este estudio representa una importante contribución para el entendimiento de la composición de los ensamblajes de peces en las bahías de manglar de la Reserva Marina de Galápagos.