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1.
Meat Sci ; 216: 109556, 2024 Oct.
Article in English | MEDLINE | ID: mdl-38852286

ABSTRACT

The value of precise dual energy X-ray absorptiometry (DEXA) cut weight predictions to lamb allocation to cut plans is unknown. Lambs (n = 191) varying in carcase weight (HSCW) and GR (tissue depth over the 12th rib) were DEXA scanned and boned out to weigh retail cuts. Cut weights were predicted using HSCW; HSCW + GR; HSCW + DEXA and HSCW + DEXA image components in GLM models. DEXA improved cut weight predictions in most cuts (P < 0.05). A dataset of 10,000 carcases was then simulated using the associations between HSCW, GR and cut weights, before being truncated to 4500 lambs representing onel day's HSCW distribution. A lamb Carcase Optimisation Tool scenario was developed with 2-3 cut options per carcase section and cut weight thresholds applied to several cuts. Processing costs, market values and actual cut weights were input into the Optimiser to determine carcase allocation to cut options for optimised profits. This scenario was repeated using the predicted cut weights to determine the cut misallocations caused. DEXA-predicted cut weights produced 16.7% and 8.0% less misallocations than HSCW and GR. DEXA produced 20.8% and 14.3% less misallocations than HSCW and GR in shortloins, and 25.5% and 12.9% less in hindquarters. While cut misallocations have little direct impact on total profits, as product is over and under-valued when misallocated, reducing cut misallocations will improve processor compliance when sorting carcases into cut plans- reducing their need to retrim, downgrade and repackage product or the erosion of customer confidence caused by supplying product not meeting market specifications.


Subject(s)
Absorptiometry, Photon , Red Meat , Sheep, Domestic , Animals , Absorptiometry, Photon/veterinary , Red Meat/analysis , Body Weight , Male , Abattoirs , Body Composition , Ribs
2.
Anim Genet ; 52(6): 785-798, 2021 Dec.
Article in English | MEDLINE | ID: mdl-34494283

ABSTRACT

The advent of high-throughput chromosome conformation capture and sequencing (Hi-C) has enabled researchers to probe the 3D architecture of the mammalian genome in a genome-wide manner. Simultaneously, advances in epigenomic assays, such as chromatin immunoprecipitation and sequencing (ChIP-seq) and DNase-seq, have enabled researchers to study cis-regulatory interactions and chromatin accessibility across the same genome-wide scale. The use of these data has revealed many unique insights into gene regulation and disease pathomechanisms in several model organisms. With the advent of these high-throughput sequencing technologies, there has been an ever-increasing number of datasets available for study; however, this is often limited to model organisms. Livestock species play critical roles in the economies of developing and developed nations alike. Despite this, they are greatly underrepresented in the 3D genomics space; Hi-C and related technologies have the potential to revolutionise livestock breeding by enabling a more comprehensive understanding of how production traits are controlled. The growth in human and model organism Hi-C data has seen a surge in the availability of computational tools for use in 3D genomics, with some tools using machine learning techniques to predict features and improve dataset quality. In this review, we provide an overview of the 3D genome and discuss the status of 3D genomics in livestock before delving into advancing the field by drawing inspiration from research in human and mouse. We end by offering future directions for livestock research in the field of 3D genomics.


Subject(s)
Breeding/methods , Genomics/methods , Livestock/genetics , Animals , Cattle/genetics , Chickens/genetics , Goats/genetics , Sheep, Domestic/genetics , Sus scrofa/genetics
3.
Meat Sci ; 137: 139-146, 2018 Mar.
Article in English | MEDLINE | ID: mdl-29182958

ABSTRACT

Twenty Angus steers were fed a diet low in ß-carotene and vitamin A for 10months. Ten steers were supplemented with vitamin A weekly, while the other ten steers did not receive any additional vitamin A. The results demonstrated that the restriction of vitamin A intake increased intramuscular fat (IMF) by 46%. This was a function of the total number of marbling flecks increasing by 22% and the average marbling fleck size increasing by 14%. Vitamin A restriction resulted in marbling flecks that were less branched (22%) and slightly more round (4%) with an increased minor axis length (7%). However, restricting vitamin A did not affect the size of the intramuscular or subcutaneous adipocyte cells or the subcutaneous fat depth. The results suggest that vitamin A affects the amount of marbling and other attributes of the marbling flecks due to hyperplasia rather than hypertrophy. This may explain why vitamin A restriction specifically affects IMF rather than subcutaneous fat deposition.


Subject(s)
Adipose Tissue/drug effects , Animal Nutritional Physiological Phenomena , Red Meat/standards , Vitamin A/pharmacology , Adipocytes , Animal Feed/analysis , Animals , Cattle , Diet/veterinary , Hyperplasia , Male , Muscle, Skeletal/physiology , Subcutaneous Fat , Vitamin A Deficiency/veterinary , beta Carotene/deficiency
4.
J Dev Orig Health Dis ; 7(5): 525-537, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27335227

ABSTRACT

Intrauterine growth restriction (IUGR) has adverse effects on metabolic health and early life, whereas physical activity is protective against later development of metabolic disease. Relationships between birth weight and physical activity in humans, and effects of IUGR on voluntary activity in rodents, are mixed and few studies have measured physical activity in a free-ranging environment. We hypothesized that induced restriction of placental growth and function (PR) in sheep would decrease spontaneous ambulatory activity (SAA) in free-ranging adolescent and young adult progeny from multi-fetal pregnancies. To test this hypothesis, we used Global Positioning System watches to continuously record SAA between 1800 and 1200 h the following day, twice during a 16-day recording period, in progeny of control (CON, n=5 males, 9 females) and PR pregnancies (n=9 males, 10 females) as adolescents (30 weeks) and as young adults (43 weeks). PR reduced size at birth overall, but not in survivors included in SAA studies. In adolescents, SAA did not differ between treatments and females were more active than males overall and during the day (each P<0.001). In adults, daytime SAA was greater in PR than CON females (P=0.020), with a similar trend in males (P=0.053) and was greater in females than males (P=0.016). Adult SAA was negatively correlated with birth weight in females only. Contrary to our hypothesis, restricted placental function and small size at birth did not reduce progeny SAA. The mechanisms for increased daytime SAA in adult female PR and low birth weight sheep require further investigation.

5.
Animal ; 9(8): 1379-85, 2015 Aug.
Article in English | MEDLINE | ID: mdl-25874817

ABSTRACT

An understanding of the perceived importance of a variety of factors affecting the ease of handling of sheep and the interactions between these factors is valuable in improving profitability and welfare of the livestock. Many factors may contribute to animal behaviour during handling, and traditionally these factors have been assessed in isolation under experimental conditions. A human social component to this phenomenon also exists. The aim of this study was to gain a deeper understanding of the importance of a variety of factors affecting ease of handling, and the interactions between these from the perspective of the livestock transporter. Qualitative interviews were used to investigate the factors affecting sheep behaviour during handling. Interview transcripts underwent thematic analysis. Livestock transporters discussed the effects of attitudes and behaviours towards sheep, helpers, facilities, distractions, environment, dogs and a variety of sheep factors including breed, preparation, experience and sex on sheep behaviour during handling. Transporters demonstrated care and empathy and stated that patience and experience were key factors determining how a person might deal with difficult sheep. Livestock transporters strongly believed facilities (ramps and yards) had the greatest impact, followed by sheep experience (naivety of the sheep to handling and transport) and breed. Transporters also discussed the effects of distractions, time of day, weather, dogs, other people, sheep preparation, body condition and sheep sex on ease of handling. The concept of individual sheep temperament was indirectly expressed.


Subject(s)
Animal Husbandry/methods , Animal Welfare/standards , Behavior, Animal/physiology , Sheep, Domestic/physiology , Transportation/methods , Animals , Dogs , Environment , Humans , Interviews as Topic , Sheep
6.
J Anim Sci ; 92(1): 39-47, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24249798

ABSTRACT

Tenderness is the one of the most important attributes of beef with regards to the intent of consumers to repurchase. Beef tenderness is frequently measured objectively as Warner-Bratzler shear force. However, to better understand the genetics underlying tenderness, better descriptors were derived herein. Two traits, adjusted shear force and aging rate, were calculated to incorporate measures of Warner-Bratzler shear force repeated over aging time of 2 muscles, longissimus dorsi (LD) and semitendinosus (ST). Analysis of these traits indicated that the shear forces of the 2 muscles are lowly correlated and aging rate, as calculated, was not correlated with adjusted shear force. Breed, SNP, and QTL effects were analyzed for the 4 traits (2 traits × 2 muscles). For adjusted shear force, the QTL were located on cattle chromosomes BTA 5, 18, 25, and 29. With the exception of the QTL on BTA 5, the adjusted shear force QTL were observed for either the LD or the ST but not both muscles. The QTL for aging rate were located on BTA 1, 4, 7, 11, 13, 19, and 20.


Subject(s)
Cattle/physiology , Meat/analysis , Muscle, Skeletal/physiology , Polymorphism, Single Nucleotide , Quantitative Trait Loci , Animals , Cattle/genetics , Female , Male , Models, Genetic , Shear Strength
7.
Anim Genet ; 44(4): 361-8, 2013 Aug.
Article in English | MEDLINE | ID: mdl-23216252

ABSTRACT

A quantitative trait locus (QTL) study of the concentrations of 14 trace and macro elements (minerals) in tissues of beef cattle was conducted in New Zealand. Back-cross calves with Jersey and Limousin ancestry (202 heifers and 211 steers) were generated using first-cross sires. This paper reports on testing for effects of QTL on the concentrations of minerals in liver, kidney and muscle in cattle at slaughter, following a growth phase during which rearing and finishing stages were on pasture. Fifteen QTL were identified (P < 0.05) on a genome-wide basis in combined-sire and within-sire analyses. In addition, the possible effect of the Limousin myostatin F94L allele was tested by fitting each calf's myostatin genotype, and 16 QTL were identified. Twelve were in common with those QTL identified previously, comprising six affecting the liver (copper and zinc, on two chromosomes each; plus iron and molybdenum), three affecting the kidney (calcium, copper and iron), and three affecting muscle (iron, strontium and zinc).


Subject(s)
Cattle/genetics , Minerals/analysis , Myostatin/genetics , Quantitative Trait Loci/genetics , Trace Elements/analysis , Alleles , Amino Acid Substitution , Animals , Cattle/metabolism , Chromosome Mapping/veterinary , Crosses, Genetic , Female , Genotype , Kidney/chemistry , Liver/chemistry , Male , Muscles/chemistry , New Zealand , Organ Specificity
8.
Anim Genet ; 42(6): 592-9, 2011 Dec.
Article in English | MEDLINE | ID: mdl-22035000

ABSTRACT

A whole-genome scan was carried out in New Zealand and Australia to detect quantitative trait loci (QTL) for live animal and carcass composition traits and meat quality attributes in cattle. Backcross calves (385 heifers and 398 steers) were generated, with Jersey and Limousin backgrounds. The New Zealand cattle were reared and finished on pasture, whilst Australian cattle were reared on grass and finished on grain for at least 180 days. This paper reports on meat quality traits (tenderness measured as shear force at 4-5 ages on two muscles as well as associated traits of meat colour, pH and cooking loss) and a number of metabolic traits. For meat quality traits, 18 significant QTL (P < 0.05), located in nine linkage groups, were detected on a genome-wise basis, in combined-sire (seven QTL) or within-sire analyses (11 QTL). For metabolic traits, 11 significant QTL (P < 0.05), located in eight linkage groups, were detected on a genome-wise basis, in combined-sire (five QTL) or within-sire analyses (six QTL). BTA2 and BTA3 had QTL for both metabolic traits and meat quality traits. Six significant QTL for meat quality and metabolic traits were found at the proximal end of chromosome 2. BTA2 and BTA29 were the most common chromosomes harbouring QTL for meat quality traits; QTL for improved tenderness were associated with Limousin-derived and Jersey-derived alleles on these two chromosomes, respectively.


Subject(s)
Cattle/genetics , Meat , Muscle, Skeletal/metabolism , Quantitative Trait Loci , Animals , Crosses, Genetic , Genome-Wide Association Study
9.
Genet Mol Res ; 10(3): 2230-44, 2011 Sep 27.
Article in English | MEDLINE | ID: mdl-21968730

ABSTRACT

Two analyses, cubic and piecewise random regression, were conducted to model growth of crossbred cattle from birth to about two years of age, investigating the ability of a piecewise procedure to fit growth traits without the complications of the cubic model. During a four-year period (1994-1997) of the Australian "Southern Crossbreeding Project", mature Hereford cows (N = 581) were mated to 97 sires of Angus, Belgian Blue, Hereford, Jersey, Limousin, South Devon, and Wagyu breeds, resulting in 1141 steers and heifers born over four years. Data included 13 (for steers) and eight (for heifers) live body weight measurements, made approximately every 50 days from birth until slaughter. The mixed model included fixed effects of sex, sire breed, age (linear, quadratic and cubic), and their interactions between sex and sire breed with age. Random effects were sire, dam, management (birth location, year, post-weaning groups), and permanent environmental effects and for each of these when possible, their interactions with linear, quadratic and cubic growth. In both models, body weights of all breeds increased over pre-weaning period, held fairly steady (slightly flattening) over the dry season then increased again towards the end of the feedlot period. The number of estimated parameters for the cubic model was 22 while for the piecewise model it was 32. It was concluded that the piecewise model was very similar to the cubic model in the fit to the data; with the piecewise model being marginally better. The piecewise model seems to fit the data better at the end of the growth period.


Subject(s)
Animal Husbandry , Cattle/growth & development , Crosses, Genetic , Models, Biological , Animals , Body Weight , Breeding , Cattle/genetics , Hybridization, Genetic , Regression Analysis
10.
Genet Mol Res ; 10(1): 433-47, 2011 Mar 15.
Article in English | MEDLINE | ID: mdl-21425094

ABSTRACT

A joint growth-carcass model using random regression was used to estimate the (co)variance components of beef cattle body weights and carcass quality traits and correlations between them. During a four-year period (1994-1997) of the Australian "southern crossbreeding project", mature Hereford cows (N = 581) were mated to 97 sires of Jersey, Wagyu, Angus, Hereford, South Devon, Limousin, and Belgian Blue breeds, resulting in 1141 calves. Data included 13 (for steers) and 8 (for heifers) body weight measurements approximately every 50 days from birth until slaughter and four carcass quality traits: hot standard carcass weight, rump fat depth, rib eye muscle area, and intramuscular fat content. The mixed model included fixed effects of sex, sire breed, age (linear, quadratic and cubic), and their interactions between sex and sire breed with age. Random effects were sire, dam, management (birth location, year, post-weaning groups), and permanent environmental effects, and their interactions with linear, quadratic and cubic growth, when possible. Phenotypic, sire and dam correlations between body weights and hot standard carcass weight and rib eye muscle area were positive and moderate to high from birth to feedlot period. Management variation accounted for the largest proportion of total variation in both growth and carcass traits. Management correlations between carcass traits were high, except between rump fat depth and intramuscular fat (r = 0.26). Management correlations between body weight and carcass traits during the pre-weaning period were positive except for intramuscular fat. The correlations were low from birth to weaning, then increased dramatically and were high during the feedlot period.


Subject(s)
Hybridization, Genetic/genetics , Meat , Animals , Breeding , Cattle , Regression Analysis
11.
Genet Mol Res ; 10(1): 448-58, 2011 Mar 15.
Article in English | MEDLINE | ID: mdl-21425095

ABSTRACT

A joint growth-carcass analysis was conducted to develop equations for predicting carcass quality traits associated with variation in growth path of crossbred cattle. During a four-year period (1994-1997) of the Australian "Southern Crossbreeding Project", mature Hereford cows (r = 581) were mated to 97 sires of Jersey, Wagyu, Angus, Hereford, South Devon, Limousin, and Belgian Blue breeds, resulting in 1141 calves. Data included body weight measurements of steers and heifers from birth until slaughter and four carcass quality traits: hot standard carcass weight, rump fat depth, rib eye muscle area, and intramuscular fat content. The model provides nine outputs: median and mean of carcass quality traits, predicted means, and lower and upper confidence intervals, as well as predicted intervals of carcass quality traits (95%) and economic values for domestic market and export markets. Input to the model consists of sex, sire breeds, age (in days)-weight (kg) pairs and slaughter age (500 days for heifer and 700 days for steers). The prediction model is able to accommodate different sexes across seven sire breeds and various management groups at any slaughter age. Its strength lies in its simplicity and flexibility, desirable to accommodate producers with different management schemes. In general, fat depth and intramuscular fat were found to be more affected by differences in growth rate than hot carcass weight and eye muscle area. Also, export market value was more sensitive to growth rate modifications than domestic market value. This model provides a tool by which the producer can estimate the impact of management decisions.


Subject(s)
Meat , Animals , Body Weight , Breeding , Cattle , Hybridization, Genetic
12.
Anim Genet ; 41(6): 589-96, 2010 Dec.
Article in English | MEDLINE | ID: mdl-20477785

ABSTRACT

A QTL study of live animal and carcass traits in beef cattle was carried out in New Zealand and Australia. Back-cross calves (385 heifers and 398 steers) were generated, with Jersey and Limousin backgrounds. This paper reports on weights of eight organs (heart, liver, lungs, kidneys, spleen, gastro-intestinal tract, fat, and rumen contents) and 12 fat composition traits (fatty acid (FA) percentages, saturated and monounsaturated FA subtotals, and fat melting point). The New Zealand cattle were reared and finished on pasture, whilst Australian cattle were reared on grass and finished on grain for at least 180 days. For organ weights and fat composition traits, 10 and 12 significant QTL locations (P<0.05), respectively, were detected on a genome-wide basis, in combined-sire or within-sire analyses. Seven QTL significant for organ weights were found at the proximal end of chromosome 2. This chromosome carries a variant myostatin allele (F94L), segregating from the Limousin ancestry, and this is a positional candidate for the QTL. Ten significant QTL for fat composition were found on chromosomes 19 and 26. Fatty acid synthase and stearoyl-CoA desaturase (SCD1), respectively, are positional candidate genes for these QTL. Two FA QTL found to be common to sire groups in both populations were for percentages of C14:0 and C14:1 (relative to all FAs) on chromosome 26, near the SCD1 candidate gene.


Subject(s)
Adipose Tissue/chemistry , Body Composition/genetics , Cattle/genetics , Fatty Acids/chemistry , Organ Size/genetics , Quantitative Trait Loci/genetics , Alleles , Animals , Australia , Chromosome Mapping/veterinary , Crosses, Genetic , Fatty Acid Synthases/genetics , Female , Genotype , Male , Myostatin/genetics , New Zealand , Phenotype , Stearoyl-CoA Desaturase/genetics
13.
Anim Genet ; 41(3): 253-9, 2010 Jun.
Article in English | MEDLINE | ID: mdl-19968649

ABSTRACT

beta, beta-carotene-9', 10'-dioxygenase (BCO2) plays a role in cleaving beta-carotene eccentrically, and may be involved in the control of adipose and milk colour in cattle. The bovine BCO2 gene was sequenced as a potential candidate gene for a beef fat colour QTL on chromosome (BTA) 15. A single nucleotide base change located in exon 3 causes the substitution of a stop codon (encoded by the A allele) for tryptophan(80) (encoded by the G allele) (c. 240G>A, p.Trp80stop, referred to herein as SNP W80X). Association analysis showed significant differences in subcutaneous fat colour and beta-carotene concentration amongst cattle with different BCO2 genotypes. Animals with the BCO2 AA genotype had more yellow beef fat and a higher beta-carotene concentration in adipose tissues than those with the GA or GG genotype. QTL mapping analysis with the BCO2 SNP W80X fitted as a fixed effect confirmed that this SNP is likely to represent the quantitative trait nucleotide (QTN) for the fat colour-related traits on BTA 15. Moreover, animals with the AA genotype had yellower milk colour and a higher concentration of beta-carotene in the milk.


Subject(s)
Cattle/genetics , Genetic Variation , Meat/analysis , Milk/chemistry , Oxygenases/genetics , beta Carotene/analysis , Adipose Tissue/anatomy & histology , Animals , Female , Gene Frequency , Male , Quantitative Trait Loci
14.
Pak J Biol Sci ; 12(3): 222-30, 2009 Feb 01.
Article in English | MEDLINE | ID: mdl-19579950

ABSTRACT

In order to investigate variation in carcass quality traits, during a four-year period, mature Hereford cows (637) were mated to 97 sires from seven breeds (Jersey, Wagyu, Angus, Hereford, South Devon, Limousin and Belgian Blue), resulting in 1144 calves. Carcass production traits (carcass weight = HCWt, fat depth = P8, eye muscle area = EMA, intramuscular fat = IMF) were obtained from these cattle that constitute the Australia's Southern Crossbreeding Project. Data were analysed using multi-variate sire model containing fixed effects of sex, sire breed, slaughter age nested within sexes. Random effects were sire, dam, management (location-year-post-weaning groups) and environmental effects. HCWt of South Devon, Belgian Blue, Limousin and unexpectedly, Angus were the heaviest on the average. Hereford calves were intermediate and Jersey and Wagyu were lighter on the average than others. Carcasses of the Belgian Blue and Limousin had low P8 and IMF, carcasses of Hereford and South Devon were intermediate and Angus, Jersey and Wagyu had high P8 and IMF. Management group effects were greatest especially for EMA and IMF. The sire variation was about 6, 6, 4 and 2% of total variation for HCWt, P8, EMA and IMF. Heritability ranged from 0.20 to 0.37 (carcass weight). The genetic correlation between the two fat depots was not as high (0.18) as expected. Results from this study suggest that strategies to increase genetic potential for HCWt would increase the genetic potential for EMA but may reduce marbling and tend to slightly increase P8. All phenotypic correlations were positive, although not large.


Subject(s)
Body Weight/genetics , Breeding , Cattle , Crosses, Genetic , Genetic Variation , Animals , Cattle/genetics , Cattle/physiology , Female , Male , Phenotype
15.
Pak J Biol Sci ; 12(6): 545-7, 2009 Mar 15.
Article in English | MEDLINE | ID: mdl-19580009

ABSTRACT

A Principal Component Analysis (PCA) was conducted on the matrix of correlations among P8 fat measures at seven different ages for steers and heifers. The P8 fat measures were collected from 1143 steers and heifer calves that were born to Hereford (h) dams inseminated with semen from seven different sire breeds: Angus, Belgian Blue, Hereford, Jersey, Limousin, South Devon and Wagyu, over a 4-year period (1994 to 1997). The first two principal components explained 61 and 57% of the total phenotypic variation in fatness for steers and heifers, respectively. The first component was positively correlated to all measures and was interpreted as a measure of overall fatness. The second component was positively correlated to fatness approximately pre-weaning and negatively correlated thereafter and thus was interpreted as maturity type but could be a function of milk supply. When estimated from a sire model, the heritability estimates were high for the first component (0.59 and 0.67 for steers and heifers, respectively) but low for the second component (0.05 and 0.19). The results demonstrate the value of combining information across multiple measurements to build accuracy, even when relatively crude methods are used.


Subject(s)
Adipose Tissue/anatomy & histology , Crosses, Genetic , Animal Husbandry , Animals , Cattle , Female , Male , Principal Component Analysis
16.
Anim Genet ; 40(5): 648-54, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19422365

ABSTRACT

A quantitative trait locus (QTL) study was carried out in two countries, recording live animal and carcass composition traits. Back-cross calves (385 heifers and 398 steers) were generated, with Jersey and Limousin breed backgrounds. The New Zealand cattle were reared on pasture to carcass weights averaging 229 kg, whilst the Australian cattle were reared on grass and finished on grain (for at least 180 days) to carcass weights averaging 335 kg. From 11 live animal traits and 31 carcass composition traits respectively, 5 and 22 QTL were detected in combined-sire analyses, which were significant (P < 0.05) on a genome-wise basis. Fourteen significant traits for carcass composition QTL were on chromosome 2 and these were traits associated with muscling and fatness. This chromosome carried a variant myostatin allele (F94L), segregating from the Limousin ancestry. Despite very different cattle management systems between the two countries, the two populations had a large number of QTL in common. Of the 18 traits which were common to both countries, and which had significant QTL at the genome-wise level, eight were significant in both countries.


Subject(s)
Body Composition/genetics , Cattle/genetics , Diet , Phenotype , Quantitative Trait Loci , Animals , Australia , Breeding , Chromosome Mapping/veterinary , Genotype , Myostatin/genetics , New Zealand , Species Specificity
17.
Meat Sci ; 81(1): 126-31, 2009 Jan.
Article in English | MEDLINE | ID: mdl-22063972

ABSTRACT

Texture parameters (peak force and compression), muscle myofibre diameter, and hydroxyproline were measured in semitendinosus samples from a cattle gene-mapping herd. The data were analysed to determine the relationships between these traits. The traits were also mapped by genetic linkage analysis to identify quantitative trait loci, and hence, candidate genes for these traits. Neither texture parameters were affected by the muscle structural traits of myofibre diameter or collagen content (as measured by hydroxyproline), despite significant variation in these traits between animals. QTL for the texture parameters of peak force and compression, as well as collagen content, were found on cattle chromosome 2 (BTA2) and attributed to the myostatin gene. Within the cattle population used for the QTL mapping, a gene variant of myostatin, F94L, has been previously shown to increase muscle mass, predominantly in the semitendinosus. It was determined herein that the F94L myostatin homozygous animals had more tender meat as measured by both peak force and compression. The variant was also responsible for a reduction in the collagen/elastin content of muscle. The myostatin F94L variant had no effect on muscle myofibre diameter of the semitendinosus, even though the variant causes substantial increases in muscle mass. Consequently, the increase in muscle mass of the variant must be due to myofibre hyperplasia and not hypertrophy. In addition, myostatin effects on tenderness are caused by changes in the extracellular matrix rather than muscle myofibre diameter.

18.
J Agric Saf Health ; 14(1): 5-20, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18376532

ABSTRACT

We undertook a literature search related to pig production facilities with two major aims: first, to review all the likely benefits that might be gained from air quality improvements; and second, to review previous research that had identified statistically significant factors affecting airborne pollutants and environmental parameters, so that these factors could be considered in a multifactorial analysis aimed at explaining variations in air pollutant concentrations. Ammonia, carbon dioxide, viable bacteria, endotoxins, and inhalable and respirable particles were identified as major airborne pollutants in the review. We found that high concentrations of airborne pollutants in livestock buildings could increase occupational health and safety risks, compromise the health, welfare, and production efficiency of animals, and affect the environment. Therefore, improving air quality could reduce environmental damage and improve animal and worker health. To achieve a reduction in pollutant concentrations, a better understanding of the factors influencing airborne pollutant concentrations in piggery buildings is required. Most of the work done previously has used simple correlation matrices to identify relationships between key factors and pollutant concentrations, without taking into consideration multifactorial effects simultaneously in a model. However, our review of this prior knowledge was the first important step toward developing a more inclusive statistical model. This review identified a number of candidate risk factors, which we then took into consideration during the development of multifactorial statistical models. We used a general linear model (GLM) to model measured internal concentrations, emissions, and environmental parameters in order to predict and potentially control the building environment.


Subject(s)
Air Pollution, Indoor , Environmental Health , Facility Design and Construction/standards , Housing, Animal/standards , Occupational Health , Air Microbiology , Air Pollution, Indoor/analysis , Air Pollution, Indoor/prevention & control , Ammonia/analysis , Animals , Australia , Carbon Dioxide/analysis , Data Interpretation, Statistical , Environmental Monitoring , Factor Analysis, Statistical , Humans , Linear Models , Models, Theoretical , Risk Factors , Swine
19.
J Agric Saf Health ; 14(1): 21-39, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18376533

ABSTRACT

The concentrations of total airborne bacteria, respirable endotoxins, ammonia, and respirable and inhalable particles were monitored in 160 piggery buildings in Australia between autumn 1997 and autumn 1999. The overall mean airborne bacteria, respirable endotoxins, ammonia (NH3), and inhalable and respirable particle concentrations measured were 1.17 x 10(5) cfu m(-3), 33.1 EU m(-3), 3.7 ppm, 1.74 mg m(-3), and 0.26 mg m(-3), respectively. The characteristics of the buildings and management systems used were documented at the time of sampling. A multifactorial general linear model (GLM) statistical procedure was used to analyze the effects of housing and management factors on the concentrations of the airborne pollutants. Both airborne bacteria and respirable endotoxin concentrations were affected by building classification (type), and respirable endotoxin concentrations were positively correlated with increasing humidity. The concentrations of airborne bacteria increased as the level of pen hygiene (cleanliness) decreased. The NH3 concentrations were primarily affected by level of pen hygiene, building volume, pig flow management, and season. Building classification, pig flow management, season, building volume, ventilation rates, and temperature affected inhalable particle concentrations. Respirable particle concentrations were primarily affected by building classification, pen hygiene, pig flow management, season, ventilation rates, temperature, and humidity. These findings suggest that environmental improvement strategies (such as improved cleaning, ventilation, and temperature control) are likely to reduce airborne pollutant concentrations in pig buildings and in the environment, thus improving the health and welfare of both pigs and farm staff.


Subject(s)
Air Microbiology , Air Pollutants, Occupational/analysis , Air Pollution, Indoor/analysis , Facility Design and Construction/standards , Housing, Animal/standards , Occupational Health , Ammonia/analysis , Animal Husbandry/methods , Animals , Australia , Carbon Dioxide/analysis , Endotoxins/analysis , Humans , Humidity , Hygiene , Linear Models , Occupational Exposure/adverse effects , Occupational Exposure/analysis , Risk Factors , Seasons , Swine , Temperature
20.
J Agric Saf Health ; 14(1): 41-52, 2008 Jan.
Article in English | MEDLINE | ID: mdl-18376534

ABSTRACT

Between autumn 1997 and autumn 1999, we measured ventilation rates (using a CO2 balance method), air temperatures, and relative humidity (using self-contained dataloggers with built-in sensors) in 160 pig housing facilities in Queensland, South Australia, Victoria, and Western Australia, in each case over a 60 h period. In some buildings, the internal air velocities above the animals were also recorded. While the monitoring instruments were being set up, a detailed questionnaire was used to collect data on major housing features and management factors. This information was statistically analyzed to quantify the effects of housing and management factors on the resulting environment conditions using a multifactorial analysis. The overall mean air temperature, relative humidity, internal air velocity, and ventilation rate were 20.3 degrees C, 58.9%, 0.12 m s(-1), and 663.9 m3 h(-1) 500 kg(-1) live weight, respectively, across all buildings. Internal building temperature and humidity were affected statistically by the type of insulation material used, the classification of buildings, and external climatic conditions. Ventilation rates were primarily affected by the type of ventilation system used, height (size) of ventilation openings, stocking density (kg m(-3)), and length, width, and height of buildings. These findings should aid the development of strategies for the industry to improve environmental control in piggery buildings.


Subject(s)
Air Pollution, Indoor , Animal Husbandry/methods , Facility Design and Construction/standards , Housing, Animal/standards , Ventilation , Air Movements , Air Pollutants, Occupational/analysis , Animals , Australia , Environmental Monitoring/methods , Humans , Humidity , Risk Factors , Surveys and Questionnaires , Swine , Temperature , Ventilation/methods
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