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1.
Methods Mol Biol ; 434: 13-23, 2008.
Article in English | MEDLINE | ID: mdl-18470636

ABSTRACT

Adenovirus vectors currently are being evaluated in gene delivery studies ranging from prophylactic vaccination to therapeutic gene therapy. The quantity of purified virus required for these studies necessitate that purification methods must shift from classical density gradient ultracentrifugation to scaleable approaches. A methodology is described herein using batch centrifugation, tangential flow ultrafiltration, and chromatography to purify adenovirus particles at a scale of approximately 10(13) viral particles. This method has been demonstrated to easily scale an additional 40-fold. While purification of human adenovirus type 5 is exemplified, modifications are suggested for the purification of other serotypes.


Subject(s)
Adenoviridae/genetics , Chromatography, Ion Exchange/methods , Genetic Vectors/isolation & purification , Cell Line , Humans , Ultrafiltration
2.
Biochem J ; 383(Pt 1): 83-9, 2004 Oct 01.
Article in English | MEDLINE | ID: mdl-15200387

ABSTRACT

Escherichia coli NeuNAc (N-acetylneuraminic acid) synthase catalyses the condensation of PEP (phosphoenolpyruvate) and ManNAc (N-acetylmannosamine) to form NeuNAc and is encoded by the neuB gene. Campylobacter jejuni has three neuB genes, one of which is very similar to the E. coli neuB gene. We have characterized the C. jejuni neuraminic acid synthase with respect to acylamino sugar specificity and stereochemistry of the PEP condensation. We determined the specificity of C. jejuni NeuNAc synthase for N-acetylmannosamine, N-butanoylmannosamine, N-propionoylmannosamine and N-pentanoylmannosamine. We find that, although this enzyme exhibits similar K(m) values for N-acylmannosamine molecules with different N-acyl groups, the kcat/K(m) values decreased with increasing chain length. NeuNAc synthase is a member of a PEP-utilizing family of enzymes that form oxo acids from PEP and a monosaccharide. This family includes KDO 8-P (2-keto-3-deoxy-D-manno-octulosonate 8-phosphate) synthase and DAH 7-P (2-keto-3-deoxy-D-arabino-heptulosonate 7-phosphate) synthase. Both enzymes catalyse the condensation of the re face of the aldehyde group of the monosaccharide with the si face of the PEP molecule. The C. jejuni NeuNAc synthase catalysed the condensation of Z- and E-[3-2H]PEP with ManNAc, yielding (3S)-3-deutero-NeuNAc and (3R)-3-deutero-NeuNAc respectively. The condensation of Z-[3-F]PEP and ManNAc yielded (3S)-3-fluoro-NeuNAc. Results of our studies suggest that the C. jejuni NeuNAc synthase, similar to KDO 8-P synthase and DAH 7-P synthase, catalyses the condensation of the si face of PEP with the aldehyde sugar. The present study is the first stereochemical analysis of the reaction catalysed by a bacterial NeuNAc synthase.


Subject(s)
Campylobacter jejuni/enzymology , Oxo-Acid-Lyases/metabolism , Catalysis , Chelating Agents/pharmacology , Hexosamines/metabolism , Kinetics , Magnetic Resonance Spectroscopy , Metals/pharmacology , Oxo-Acid-Lyases/isolation & purification , Phosphoenolpyruvate/metabolism , Recombinant Proteins/metabolism , Stereoisomerism , Substrate Specificity
3.
Glycobiology ; 12(2): 73-83, 2002 Feb.
Article in English | MEDLINE | ID: mdl-11886840

ABSTRACT

In this study, we report the first cloning and characterization of a N-acetylneuraminic acid phosphate synthase gene from Drosophila melanogaster, an insect in the protostome lineage. The gene is ubiquitously expressed at all stages of Drosophila development and in Schneider cells. Similar to the human homologue, the gene encodes an enzyme with dual substrate specificity that can use either N-acetylmannosamine 6-phosphate or mannose 6-phosphate to generate phosphorylated forms of both the sialic acids, N-acetylneuraminic acid and 2-keto-3-deoxy-D-glycero-D-galacto-nononic acid, respectively, when expressed in either bacterial or baculoviral expression systems. The identification of a functional sialic acid synthase in Drosophila indicates that insects have the biosynthetic capability to produce sialic acids endogenously. Although sialylation is widely distributed in organisms of the deuterstome lineage, genetic evidence concerning the presence or absence of sialic acid metabolism in organisms of the protostome lineage has been lacking. Homology searches of the Drosophila genome identified putative orthologues of other genes required for sialylation of glycoconjugates.


Subject(s)
Baculoviridae/genetics , Drosophila melanogaster/enzymology , Escherichia coli/genetics , Gene Expression Regulation, Enzymologic/physiology , Oxo-Acid-Lyases/genetics , Sialic Acids/biosynthesis , Amino Acid Sequence , Animals , Baculoviridae/enzymology , Base Sequence , Cloning, Molecular , Consensus Sequence , DNA Primers/chemistry , Escherichia coli/enzymology , Molecular Sequence Data , Oxo-Acid-Lyases/metabolism , Polymerase Chain Reaction , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Sequence Homology, Amino Acid , Substrate Specificity
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