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1.
Georgian Med News ; (302): 23-28, 2020 May.
Article in English | MEDLINE | ID: mdl-32672684

ABSTRACT

Generalized parodontitis and caries complications lead to tooth loss in individuals of different age groups. As a result of this often there is a violation of the integrity of the dentition, which leads to functional disorders of the muscular apparatus, temporomandibular joint and cosmetic defects. The effective method of restoration of the integrity of the dentition is dental implantation. With this in mind, the issue of dental implantation is of particular importance and requires further development including different age groups. Aim of the study is to improve the results of dental implantation and to avoid its complications based on identification of the causes of dental implantation complications and development of preventative measures in people of different age groups. 65 patients aged 35-60 years with secondary adentia were under observation. The main study group included 45 patients aged 35-60 years with secondary adentia caused by periodontal disease. The control group included 20 patients of the same age with secondary adentia due to caries complications. All patients of the main and control groups were subjected to a comprehensive examination of the condition of the periodontal and peri-implant area prior to the implantation in the shortest time after surgery. Microbiological study was conducted in 65 patients to study the dynamics of colonization of oral microflora. Complications after implantation were identified in 24 (53.33%) patients in the main group. The most frequent complications were: disruption of wound healing in 7 (15,56%) patients, pus in postoperative wound in 8 (17.78%), expressed pain and altered sensitivity after implantation in 4 patients (8.89%) patients, perforation of the mandible in 1 (2.22%) patient, divergence of the wound edges without exposure of the implant in 4 (8.89%) patients. A large number (53.33%) of postoperative complications in patients of the main group with secondary adentia was due to generalized periodontitis. In patients of the main group at the early stage of dental implantation were revealed qualitative and quantitative changes in the microflora of the implanted furrow with increasing aggressiveness were revealed.


Subject(s)
Dental Implants , Periodontitis , Adult , Dental Restoration Failure , Humans , Mandible , Middle Aged , Postoperative Complications , Wound Healing
2.
Phys Rev Lett ; 123(11): 113401, 2019 Sep 13.
Article in English | MEDLINE | ID: mdl-31573256

ABSTRACT

In slow collisions of two bare nuclei with the total charge larger than the critical value Z_{cr}≈173, the initially neutral vacuum can spontaneously decay into the charged vacuum and two positrons. The detection of the spontaneous emission of positrons would be direct evidence of this fundamental phenomenon. However, the spontaneously produced particles are indistinguishable from the dynamical background in the positron spectra. We show that the vacuum decay can nevertheless be observed via impact-sensitive measurements of pair-production probabilities. The possibility of such an observation is demonstrated using numerical calculations of pair production in low-energy collisions of heavy nuclei.

3.
Anim Genet ; 50(6): 757-760, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31475379

ABSTRACT

The maternal and paternal genetic variation of horse breeds from the Baltic Sea region, including three local Estonian breeds, was assessed and compared with that of Altai and Yakutian horses. In the mtDNA D-loop region, 72 haplotypes assigned to 20 haplogroups in the nine breeds were detected. In Estonian local breeds, 38 mtDNA haplotypes were found, and five of them were shared by the three breeds. More than 60% of all identified haplotypes were rare. Compared with the Estonian Native and Estonian Heavy Draught breeds, a higher haplotypic diversity was found in the Tori breed (h = 0.969). Moreover, four haplotypes shared among Finnish and Estonian local horse breeds indicated ancient ancestry, and of these, H30 (haplogroup D3) showed global sharing and genetic links between modern Baltic Sea region and Siberian horses, specifically. The studied breed set showed high variability in maternal inheritance and mixed patterns of the international and native breeds of the Siberian and Baltic regions. No variation was found in paternally inherited markers among horse breeds in the Baltic Sea region.


Subject(s)
Horses/genetics , Animals , DNA, Mitochondrial , Estonia , Female , Haplotypes , Horses/classification , Male , Pedigree
4.
Bull Exp Biol Med ; 167(3): 335-338, 2019 Jul.
Article in English | MEDLINE | ID: mdl-31346870

ABSTRACT

The development and manufacturing of serum-free culture media allowing reducing the costs of preparations and standardizing the biotechnological process are important trends in biotechnology. Substitution of protein compounds in the serum-free media with recombinant analogues reduces the risk of contamination with various infectious agents. Human transferrin is a protein component of serum-free media responsible for the transport of Fe3+ ions into cells. We generated a producing strain P. pastoris secreting human transferrin to the culture medium. The use of constitutive GAP promoter and maintenance of medium pH at 6.5 allows attaining maximum level of transferrin expression (20 mg/liter).


Subject(s)
Bioreactors/microbiology , Pichia/genetics , Pichia/metabolism , Transferrin/biosynthesis , Transferrin/genetics , Culture Media/chemistry , Gene Expression/genetics , Humans , Promoter Regions, Genetic/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/genetics
5.
Anim Genet ; 50(3): 217-227, 2019 Jun.
Article in English | MEDLINE | ID: mdl-30957254

ABSTRACT

Indigenous cattle breeds in northern Eurasia have adapted to harsh climate conditions. The local breeds are important genetic resources with cultural and historical heritages, and therefore, their preservation and genetic characterization are important. In this study, we profiled the whole-blood transcriptome of two native breeds (Northern Finncattle and Yakutian cattle) and one commercial breed (Holstein) using high-throughput RNA sequencing. More than 15 000 genes were identified, of which two, 89 and 162 genes were significantly upregulated exclusively in Northern Finncattle, Yakutian cattle and Holstein cattle respectively. The functional classification of these significantly differentially expressed genes identified several biological processes and pathways related to signalling mechanisms, cell differentiation and host-pathogen interactions that, in general, point towards immunity and disease resistance mechanisms. The gene expression pattern observed in Northern Finncattle was more similar to that of Yakutian cattle, despite sharing similar living conditions with the Holstein cattle included in our study. In conclusion, our study identified unique biological processes in these breeds that may have helped them to adapt and survive in northern and sub-arctic environments.


Subject(s)
Blood/metabolism , Cattle/genetics , Gene Expression Profiling , Animals , Cattle/classification , Cattle/metabolism , Gene Expression Regulation , Metabolic Networks and Pathways
6.
J Genet ; 96(1): 47-51, 2017 Mar.
Article in English | MEDLINE | ID: mdl-28360389

ABSTRACT

Feral cattle residing in Chirikof Island, Alaska, are relatively distinct from breeds used in commercial production in North America. However, preliminary evidence suggested that they exhibit substantial genetic relationship with cattle from Yakutian region of Siberia. Thus, our objective was to further elucidate quantify the origins, admixture and divergence of the Chirikof Island cattle relative to cattle from Siberia and USA. Subject animals were genotyped at 15 microsatellite loci. Compared with Turano-Mongolian and North American cattle, Chirikof Island cattle had similar variation, with slightly less observed heterozygosity, fewer alleles per locus and a positive fixation index. Analysis of the genetic distances revealed two primary clusters; one that contained the North American breeds and the Kazakh White head, and a second that contained the Yakutian and Kalmyk breeds, and the Chirikof population. Thus, it is suggested that Chirikof Island cattle may be a composite of British breeds emanating from North America and Turano-Mongolian cattle. A potential founder effect, consistent with historical records of the Russian-American period, may contribute to the adaptation of the Chirikof Island cattle to their harsh high-latitude environment. Further study of adaptive mechanisms manifest by these cattle is warranted.


Subject(s)
Emigration and Immigration , Alaska , Alleles , Animals , Breeding , Cattle , Evolution, Molecular , Gene Frequency , Genetic Variation , Genotype , Microsatellite Repeats , Phylogeny , Siberia
7.
Anim Genet ; 47(6): 647-657, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27629771

ABSTRACT

Domestication in the near eastern region had a major impact on the gene pool of humpless taurine cattle (Bos taurus). As a result of subsequent natural and artificial selection, hundreds of different breeds have evolved, displaying a broad range of phenotypic traits. Here, 10 Eurasian B. taurus breeds from different biogeographic and production conditions, which exhibit different demographic histories and have been under artificial selection at various intensities, were investigated using the Illumina BovineSNP50 panel to understand their genetic diversity and population structure. In addition, we scanned genomes from eight breeds for signatures of diversifying selection. Our population structure analysis indicated six distinct breed groups, the most divergent being the Yakutian cattle from Siberia. Selection signals were shared (experimental P-value < 0.01) with more than four breeds on chromosomes 6, 7, 13, 16 and 22. The strongest selection signals in the Yakutian cattle were found on chromosomes 7 and 21, where a miRNA gene and genes related to immune system processes are respectively located. In general, genomic regions indicating selection overlapped with known QTL associated with milk production (e.g. on chromosome 19), reproduction (e.g. on chromosome 24) and meat quality (e.g. on chromosome 7). The selection map created in this study shows that native cattle breeds and their genetic resources represent unique material for future breeding.


Subject(s)
Cattle/genetics , Genetic Variation , Genetics, Population , Selection, Genetic , Animals , Breeding , Europe , Genotype , Haplotypes , Meat , Milk , Reproduction/genetics , Siberia
8.
Eksp Klin Farmakol ; 77(4): 42-4, 2014.
Article in Russian | MEDLINE | ID: mdl-25076759

ABSTRACT

Autors determine the clinical effectiveness of including cytoflavin in intensive care of patients with severe combined traumatic brain injury. A prospective blind randomized controlled study was conducted on two groups involving 101 participants. In group I (58 patients), the intensive care was standard. In group II (43 patients), the intensive care included cytoflavin which was added beginning with the second day of the post-traumatic period. For this purpose, 10 ml of cytoflavin was dissolved in 200 ml of 10% aqueous solution of glucose and was administered intravenously at a speed of 140 drops (7 ml) per minute within 7 days. The use of cytoflavin in complex intensive care of severe combined traumatic brain injury within two days after injury (with the proper correction of blood circulation and respiration) reduced the number of multiple organ dysfunctions, the number is purulent-septic complications, the time of regress in multiple organ dysfunctions, and the reanimation period in intensive care department on the average by a factor of 1.4 - 1.6 (p < 0.005).


Subject(s)
Brain Injuries/therapy , Critical Care/methods , Flavin Mononucleotide/administration & dosage , Inosine Diphosphate/administration & dosage , Neuroprotective Agents/administration & dosage , Niacinamide/administration & dosage , Succinates/administration & dosage , Adolescent , Adult , Aged , Drug Combinations , Female , Humans , Male , Middle Aged , Prospective Studies , Time Factors
9.
Adv Gerontol ; 27(3): 578-83, 2014.
Article in Russian | MEDLINE | ID: mdl-25827011

ABSTRACT

Research objective--determination of efficiency of intensive care with inclusion Cytoflavin in patients of old age in combined traumatic brain injury. A prospective controlled blind randomized study was conducted. In 1st group (21 people) the patients received a standard intensive care, in 2nd group (18 persons) Cytoflavin was included in complex intensive care. Using Cytoflavin starting from 2 days post-traumatic period (with the correction of blood circulation and respiration) had antioxidant and detoxification effects, contributed to the recovery rate of free radical and metabolic processes, reduced the degree of impairment in the structural-functional state of membranes and restored the conformational structure of membrane proteins in the earlier periods. Reduction in reactions of disadaptation led to regression of multiple organ dysfunctions, restoration the level of consciousness at an earlier date. The number of cases of severe respiratory distress syndrome decreased.


Subject(s)
Craniocerebral Trauma/therapy , Critical Care/methods , Flavin Mononucleotide/therapeutic use , Inosine Diphosphate/therapeutic use , Neuroprotective Agents/therapeutic use , Niacinamide/therapeutic use , Succinates/therapeutic use , Aged , Antioxidants/metabolism , Craniocerebral Trauma/drug therapy , Craniocerebral Trauma/metabolism , Drug Combinations , Flavin Mononucleotide/administration & dosage , Glasgow Coma Scale , Humans , Inosine Diphosphate/administration & dosage , Lipid Peroxides/blood , Middle Aged , Neuroprotective Agents/administration & dosage , Niacinamide/administration & dosage , Prospective Studies , Succinates/administration & dosage , Treatment Outcome
10.
Heredity (Edinb) ; 103(5): 404-15, 2009 Nov.
Article in English | MEDLINE | ID: mdl-19603063

ABSTRACT

Maternally inherited mitochondrial DNA (mtDNA) has been used extensively to determine origin and diversity of taurine cattle (Bos taurus) but global surveys of paternally inherited Y-chromosome diversity are lacking. Here, we provide mtDNA information on previously uncharacterised Eurasian breeds and present the most comprehensive Y-chromosomal microsatellite data on domestic cattle to date. The mitochondrial haplogroup T3 was the most frequent, whereas T4 was detected only in the Yakutian cattle from Siberia. The mtDNA data indicates that the Ukrainian and Central Asian regions are zones where hybrids between taurine and zebu (B. indicus) cattle have existed. This zebu influence appears to have subsequently spread into southern and southeastern European breeds. The most common Y-chromosomal microsatellite haplotype, termed here as H11, showed an elevated frequency in the Eurasian sample set compared with that detected in Near Eastern and Anatolian breeds. The taurine Y-chromosomal microsatellite haplotypes were found to be structured in a network according to the Y-haplogroups Y1 and Y2. These data do not support the recent hypothesis on the origin of Y1 from the local European hybridization of cattle with male aurochsen. Compared with mtDNA, the intensive culling of breeding males and male-mediated crossbreeding of locally raised native breeds has accelerated loss of Y-chromosomal variation in domestic cattle, and affected the contribution of genetic drift to diversity. In conclusion, to maintain diversity, breeds showing rare Y-haplotypes should be prioritised in the conservation of cattle genetic resources.


Subject(s)
Cattle/genetics , DNA, Mitochondrial/genetics , Pedigree , Y Chromosome/genetics , Animals , Base Sequence , DNA, Mitochondrial/analysis , Fathers , Female , Genetic Variation , Haplotypes , Male , Molecular Sequence Data , Mothers , Phylogeny , Sequence Homology, Nucleic Acid
11.
Vestn Khir Im I I Grek ; 168(1): 64-5, 2009.
Article in Russian | MEDLINE | ID: mdl-19432150

ABSTRACT

Many present-day manuals on surgery and traumatology give distorted description of the method of shoulder dislocation by Kocher. In treatment of 69 patients with anterior dislocation of the shoulder the authors used the original Kocher's method (without traction, countertraction, without an assistant) and studied its effectiveness and safety. In 12 (17.4%) patients the dislocation was reduced without anesthesia, in 13 (18.8%) under local anesthetic, in 44 (63.8%) patients--under general anesthetic. Reduction of shoulder dislocation was successful in all the patients. There were no complications. The original Kocher's method of reduction of anterior dislocation of the shoulder is effective and safe.


Subject(s)
Manipulation, Orthopedic/methods , Shoulder Dislocation/therapy , Adult , Aged , Aged, 80 and over , Female , Humans , Male , Middle Aged , Treatment Outcome , Young Adult
12.
Angiol Sosud Khir ; 13(2): 125-6, 2007.
Article in Russian | MEDLINE | ID: mdl-18004271

ABSTRACT

The article describes a rare clinical case of an atherosclerotic (poststenotic) aneurysm of the second segment of the subclavian artery, also involving the opening of the internal thoracic artery (ITA) in a male patient with CAD. The authors showed a possibility of preserving the ITA during resection of the aneurysm, in order to use it later on for surgical revascularization of the myocardium.


Subject(s)
Angioplasty/methods , Arteriovenous Fistula/pathology , Arteriovenous Fistula/surgery , Subclavian Artery/pathology , Subclavian Artery/surgery , Arteriovenous Fistula/diagnosis , Bradycardia/diagnosis , Electrocardiography , Humans , Male , Middle Aged
13.
Anim Genet ; 37(4): 390-2, 2006 Aug.
Article in English | MEDLINE | ID: mdl-16879354

ABSTRACT

Single nucleotide polymorphisms (SNPs) in growth hormone 1 (GH1), insulin-like growth factor 1 (IGF1) and leptin (LEP), all candidates for production traits in cattle, were characterized in North Eurasian cattle breeds. Allele frequencies of IGF1 exhibited significant (P < 0.05) deviation from neutral expectation and therefore, might be associated with divergence in North Eurasian cattle because of genetic selection. Allele frequencies and lower heterozygosity of LEP may indicate a recent introduction of an alternative allele in this geographic region. Locus F(ST) estimates were highest for IGF1 (0.151, sigma = 0.042) and lowest for GH (0.062, sigma = 0.020). Our results suggest a slightly higher population differentiation across the candidate genes (FST = 0.108) than across microsatellites (FST = 0.095), possibly because of selection and stochastic effects.


Subject(s)
Cattle/genetics , Growth Hormone/genetics , Insulin-Like Growth Factor I/genetics , Leptin/genetics , Polymorphism, Single Nucleotide , Animals , Asia , Cattle/classification , Europe , Gene Frequency , Genes , Heterozygote , Microsatellite Repeats , Quantitative Trait Loci
14.
Neurosci Behav Physiol ; 35(4): 333-41, 2005 May.
Article in English | MEDLINE | ID: mdl-15929558

ABSTRACT

Published data are reviewed along with our own data on synaptic plasticity and rearrangements of synaptic organelles in the central nervous system. Contemporary laser scanning and confocal microscopy techniques are discussed, along with the use of serial ultrathin sections for in vivo and in vitro studies of dendritic spines, including those addressing relationships between morphological changes and the efficiency of synaptic transmission, especially in conditions of the long-term potentiation model. Different categories of dendritic spines and postsynaptic densities are analyzed, as are the roles of filopodia in originating spines. The role of serial ultrathin sections for unbiased quantitative stereological analysis and three-dimensional reconstruction is assessed. The authors' data on the formation of more than two synapses on single mushroom spines on neurons in hippocampal field CA1 are discussed. Analysis of these data provides evidence for new paradigms in both the organization and functioning of synapses.


Subject(s)
Dendritic Spines/ultrastructure , Hippocampus/ultrastructure , Imaging, Three-Dimensional , Synapses/ultrastructure , Animals , Microscopy, Electron, Transmission/methods , Rats , Sciuridae
15.
Article in Russian | MEDLINE | ID: mdl-15069820

ABSTRACT

The article reviews the literature data and results obtained by the authors concerning synaptic plasticity and remodeling of synaptic organelles in the central nervous system. Modern techniques of laser scanning confocal microscopy and serial thin sectioning for in vivo and in vitro studies of dendritic spines including a correlation between morphological changes and synaptic transmission efficiency are discussed, particularly, in relation to long-term potentiation. Organization of different types of dendritic spines and involvement of filopodia in spine genesis are examined. Significance of serial ultrathin sections for unbiased quantitative stereological analysis and three-dimensional reconstructions is discussed. The contact of one dendritic spine with two presynaptic boutons (multiple synapses) on both CA1 mushroom dendritic spines is discussed. The analyzed findings suggest new ideas for organization and functioning of synapses.


Subject(s)
Dendrites/ultrastructure , Hippocampus/anatomy & histology , Imaging, Three-Dimensional , Synapses/ultrastructure , Animals , Rats , Sciuridae
16.
J Neurosurg Sci ; 47(3): 129-35; discussion 135, 2003 Sep.
Article in English | MEDLINE | ID: mdl-14618125

ABSTRACT

AIM: The aim of this study is to present the clinical picture of patients with cerebellopontine angle meningiomas and analyze the results of their operative treatment. METHODS: A retrospective study of patients with cerebellopontine angle meningiomas operated consecutively in our department over an 11-year period has been carried out. Data regarding their clinical features, surgical treatment, morbidity, mortality and outcome have been analyzed. Forty-four patients with cerebellopontine angle meningiomas were operated during the period 1991-2001 (intervention: tumor removal via the retrosigmoid suboccipital approach). MAIN OUTCOME MEASURES: clinical condition, MRI/ CT imaging. RESULTS: The median duration of symptoms prior to diagnosis was 44.5 months. The most frequent initial complaints were hearing loss, tinnitus and headache. Most frequent symptoms and signs at presentation were cerebellar, followed by hearing loss and trigeminal nerve symptoms. In 98% of the cases the operative approach used was the retrosigmoidal suboccipital. Total tumor removal was achieved in 55%. After total tumor removal no recurrences have been observed. The mortality rate was 2%. CONCLUSION: The application of different classification schemes complicates the comparison between published series. The outcome depends on their location, consistency, size and relation to the surrounding neurovascular structures. In our experience the retrosigmoid suboccipital approach is most appropriate for their surgical treatment. It offers the possibility to remove completely even large meningiomas and avoids the risk of recurrences.


Subject(s)
Cerebellopontine Angle/pathology , Meningeal Neoplasms/pathology , Meningeal Neoplasms/surgery , Meningioma/pathology , Meningioma/surgery , Adolescent , Adult , Aged , Cerebellopontine Angle/surgery , Female , Humans , Magnetic Resonance Imaging , Male , Middle Aged , Neuroma, Acoustic/pathology , Neuroma, Acoustic/surgery , Retrospective Studies
17.
AIDS Res Hum Retroviruses ; 16(7): 621-5, 2000 May 01.
Article in English | MEDLINE | ID: mdl-10791872

ABSTRACT

A pilot study was undertaken with the objective of developing a simple, economical, and efficient algorithm through which to subtype HIV-1 in a large epidemiological cohort study in Uganda. A peptide enzyme immunoassay (PEIA) employing both V3 and gp41 regions and a heteroduplex mobility assay (HMA) were evaluated in comparison with DNA sequencing. Of 146 samples selected, 115 (79%) were successfully sequenced. Taking sequence data as the "gold standard," other assays were compared with these data. The HMA correctly identified 95 (83%) of the samples, and only 1 sample was wrongly identified. The V3 PEIA alone and in combination with gp41 peptides correctly identified 76 and 78% of the samples, respectively; however, the number of wrongly identified samples was four times less with the combination compared with V3 peptides alone (4 versus 16%). The sensitivity, specificity, and positive and negative predictive values for serotype A and D samples were greater for the combination than V3 peptides alone. We have described a new algorithm to segregate subtypes A and D. This algorithm uses the two peptide assays followed by HMA and then DNA sequencing for untypable samples, giving an accuracy of 95% at a cost of 37 and 21% for consumables compared with subtyping all the samples by HMA or DNA sequencing, respectively. This proposed approach is suitable for epidemiological studies in Uganda and other regions with a predominance of A and D subtypes.


Subject(s)
Algorithms , HIV Infections/epidemiology , HIV Infections/virology , HIV-1/classification , HIV-1/genetics , Amino Acid Sequence , HIV Envelope Protein gp120/chemistry , HIV Envelope Protein gp120/genetics , HIV Envelope Protein gp120/immunology , HIV Envelope Protein gp41/chemistry , HIV Envelope Protein gp41/genetics , HIV Envelope Protein gp41/immunology , HIV-1/immunology , Heteroduplex Analysis , Humans , Immunoenzyme Techniques , Molecular Sequence Data , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/immunology , Peptides/immunology , Pilot Projects , Predictive Value of Tests , Sensitivity and Specificity , Sequence Analysis, DNA , Serotyping , Uganda/epidemiology
18.
J Acquir Immune Defic Syndr Hum Retrovirol ; 19(4): 315-20, 1998 Dec 01.
Article in English | MEDLINE | ID: mdl-9833739

ABSTRACT

The range and specificity of the humoral immune response to HIV-1 subtypes B and E was investigated in Thai samples. Sera from HIV-1-positive subjects, consisting of subtypes B (n = 24) and E (n = 138), were characterized in relation to the neutralization of primary isolates and T-cell line-adapted (TCLA) strains and binding to monomeric gp120, the CD4/gp120 binding site (BS), and V3 peptides. A subtype-specific pattern of antibody binding was observed with the exception of the CD4/gp 120MN BS. Neutralization of TCLA strains (n = 4) was strongly type-specific (p = .002); however, neutralization of primary isolates (n = 8) was weak and group specific. Thus, the subtype specificity of B and E sera in the neutralization of TCLA strains, but not primary isolates, supports the dominance of the V3 region in TCLA virus neutralization but does not support the distinction of subtypes B and E as discrete neutralization serotypes in Thailand.


PIP: The range and specificity of the humoral immune response to HIV-1 subtypes B and E were investigated in sera and plasma collected from 168 infected patients from Thailand in 1990-94. Specifically, samples were examined for the presence of binding antibody to env regions within monomeric gp120, the CD4/gp120 binding site, and the V3 domain as well as neutralizing antibodies to T-cell line-adapted (TCLA) and primary HIV-1 isolates from subtypes B and E. A subtype-specific pattern of antibody binding was observed with the exception of the CD4/gp120MN binding site. Although neutralization of TCLA strains was highly type-specific, neutralization of primary isolates was weak and group-specific. This finding supports the dominance of the V3 region in TCLA virus neutralization but fails to confirm the distinction of subtypes B and E as discrete neutralization serotypes in Thailand.


Subject(s)
HIV Antibodies/blood , HIV Envelope Protein gp120/immunology , HIV Seropositivity/immunology , HIV-1/classification , HIV-1/immunology , Amino Acid Sequence , Antigen-Antibody Reactions , CD4 Antigens/immunology , Cell Line , Consensus Sequence , Epitopes/chemistry , Epitopes/immunology , HIV Envelope Protein gp120/chemistry , HIV Seropositivity/blood , HIV-1/physiology , Humans , Jurkat Cells , Molecular Sequence Data , Neutralization Tests , T-Lymphocytes , Thailand , Virus Replication
20.
AIDS ; 12(12): 1405-12, 1998 Aug 20.
Article in English | MEDLINE | ID: mdl-9727560

ABSTRACT

OBJECTIVE: To compare the performance of V3-loop peptide enzyme immunoassay (PEIA) methodologies from four different laboratories for subtyping HIV-1, and to determine the causes for the lack of correlation between V3-loop PEIA serotyping and subtyping by sequencing. MATERIALS AND METHODS: Synthetic peptides derived from the amino-acid consensus sequences of the V3-loop of group M strains representing genetic subtypes A-F as well as reference strains were evaluated in PEIA by four different laboratories for their ability to accurately determine the subtype in a panel of 85 sera obtained from persons infected with known HIV-1 subtypes (28 subtype A, 34 subtype B, four subtype C, 10 subtype D, seven subtype F, one each of subtype H and G). Furthermore, the V3 loop of the corresponding virus was compared with the V3 loop of the peptides used in PEIA. RESULTS: The correlation between HIV-1 subtyping by sequencing and V3-loop PEIA from the different laboratories varied considerably for the different HIV-1 subtypes: subtype A (46-68%), B (38-85%), C (75-100%), D (29-50%), and F (17-57%). A 70% agreement between PEIA and sequencing subtypes was observed for samples with the concordant presence of the same octameric sequences in the V3 loop of the virus and the V3 loop of the peptide used in PEIA; however, only 42% of specimens with different V3-loop octameric viral and peptide sequences yielded concordant results in V3-loop serotyping and genetic subtyping. CONCLUSION: Our results indicate that V3-loop PEIA methodologies used in different laboratories correlate poorly with genetic subtyping, and that their accuracy to predict HIV-1 subtypes in sera of Belgian individuals infected with different HIV-1 subtypes (A, B, C, D, F, G and H) vary considerably. The poor correlation between serotyping and genetic subtyping was partly due to the simultaneous occurrence of subtype-specific octameric sequences at the tip of the V3 loop of viruses belonging to different genetic subtypes.


Subject(s)
Genes, env , HIV Envelope Protein gp120/classification , HIV Envelope Protein gp120/genetics , HIV Infections/virology , HIV-1/classification , Immunoenzyme Techniques , Peptide Fragments/classification , Peptide Fragments/genetics , Amino Acid Sequence , HIV Antibodies/blood , HIV Envelope Protein gp120/immunology , Humans , Molecular Sequence Data , Peptide Fragments/immunology , Serotyping
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