Gene expression, evolution, and the genetics of electrosensing in the smalltooth sawfish, Pristis pectinata.

Sawfishes (Pristidae) are large, highly threatened rays named for their tooth-studded rostrum, which is used for prey sensing and capture. Of all five species, the smalltooth sawfish, Pristis pectinata, has experienced the greatest decline in range, currently found in only ~20% of its historic range. To better understand the genetic underpinnings of these taxonomically and morphologically unique animals, we collected transcriptomic data from several tissue types, mapped them to the recently completed reference genome, and contrasted the patterns observed with comparable data from other elasmobranchs. Evidence of positive selection was detected in 79 genes in P. pectinata, several of which are involved in growth factor/receptor tyrosine kinase signaling and body symmetry and may be related to the unique morphology of sawfishes. Changes in these genes may impact cellular responses to environmental conditions such as temperature, dissolved oxygen, and salinity. Data acquired also allow for examination of the molecular components of P. pectinata electrosensory systems, which are highly developed in sawfishes and have likely been influential in their evolutionary success.

Genetic evidence supports a range extension for the Brazilian cownose ray Rhinoptera brasiliensis in the western North Atlantic.

We report 24 new records of the Brazilian cownose ray Rhinoptera brasiliensis outside its accepted geographic range. Sequencing of a 442-base pair portion of the mitochondrial NADH dehydrogenase subunit 2 gene for 282 Rhinoptera samples revealed eight records off the east coast of the USA and 16 from the eastern Gulf of Mexico. Both sexes of all life stages were documented in all seasons over multiple years in the Indian River and Lake Worth lagoons, Florida, indicating that their range extends further in the western North Atlantic than previously described.

A new genus and species of fish blood fluke, Achorovermis testisinuosus gen. et sp. n. (Digenea: Aporocotylidae), infecting critically endangered smalltooth sawfish, Pristis pectinata (Rhinopristiformes: Pristidae) in the Gulf of Mexico.

Achorovermis testisinuosus gen. et sp. n. (Digenea: Aporocotylidae) infects the heart of the smalltooth sawfish, Pristis pectinata Latham (Rhinopristiformes: Pristidae), in the eastern Gulf of Mexico. Specimens of the new genus, along with the other blood flukes that infect batoids are similar by having an inverse U-shaped intestine and a curving testis as well as by lacking tegumental spines. The new genus differs from all of the other blood flukes infecting batoids by having an elongate body (>50 × longer than wide), a testis having >100 curves, and an ovary wholly anterior to the uterus. It differs from Ogawaia glaucostegi Cutmore, Cribb et Yong, 2018, the only other blood fluke infecting a rhinopristiform, by having a body that is >50 × (vs <30 ×) longer than wide, a testis that is >75 × (vs <40 ×) longer than wide and has >100 (vs <70) curves, an ovary wholly anterior to (vs lateral and dorsal to) the seminal vesicle, a uterus wholly posterior to (vs overlapping and lateral to both) the testis and ovary, and a sinuous (vs convoluted) uterus. The new species joins a small group of chondrichthyan blood flukes that lack tegumental spines: O. glaucostegi, Orchispirium heterovitellatum Madhavi et Rao, 1970, Myliobaticola richardheardi Bullard et Jensen, 2008, Electrovermis zappum Warren et Bullard, 2019. Blood flukes infecting batoids are further unique by having a curving testis. That is, the blood flukes infecting species within Selachii are morphologically distinct from those infecting species within the Batoidea (excluding Gymnurahemecus bulbosus Warren et Bullard, 2019). Based on the morphological similarity, we suspect that the new species shares a recent common ancestor with O. glaucostegi. The discovery of the new species brings the total number of chondrichthyan blood flukes to 11 species assigned to nine genera.

High-resolution molecular identification of smalltooth sawfish prey.

The foundation of food web analysis is a solid understanding of predator-prey associations. Traditional dietary studies of fishes have been by stomach content analysis. However, these methods are not applicable to Critically Endangered species such as the smalltooth sawfish (Pristis pectinata). Previous research using the combination of stable isotope signatures from fin clips and 18S rRNA gene sequencing of fecal samples identified the smalltooth sawfish as piscivorous at low taxonomic resolution. Here, we present a high taxonomic resolution molecular technique for identification of prey using opportunistically acquired fecal samples. To assess potential biases, primer sets of two mitochondrial genes, 12S and 16S rRNA, were used alongside 18S rRNA, which targets a wider spectrum of taxa. In total, 19 fish taxa from 7 orders and 11 families native to the Gulf of Mexico were successfully identified. The sawfish prey comprised diverse taxa, indicating that this species is a generalist piscivore. These findings and the molecular approach used will aid recovery planning for the smalltooth sawfish and have the potential to reveal previously unknown predator-prey associations from a wide range of taxa, especially rare and hard to sample species.

Thermal performance responses in free-ranging elasmobranchs depend on habitat use and body size.

Temperature is one of the most influential drivers of physiological performance and behaviour in ectotherms, determining how these animals relate to their ecosystems and their ability to succeed in particular habitats. Here, we analysed the largest set of acceleration data compiled to date for elasmobranchs to examine the relationship between volitional activity and temperature in 252 individuals from 8 species. We calculated activation energies for the thermal performance response in each species and estimated optimum temperatures using an Arrhenius breakpoint analysis, subsequently fitting thermal performance curves to the activity data. Juveniles living in confined nursery habitats not only spent substantially more time above their optimum temperature and at the upper limits of their performance breadths compared to larger, less site-restricted animals, but also showed lower activation energies and broader performance curves. Species or life stages occupying confined habitats featured more generalist behavioural responses to temperature change, whereas wider ranging elasmobranchs were characterised by more specialist behavioural responses. The relationships between the estimated performance regimes and environmental temperature limits suggest that animals in confined habitats, including many juvenile elasmobranchs within nursery habitats, are likely to experience a reduction of performance under a warming climate, although their flatter thermal response will likely dampen this impact. The effect of warming on less site-restricted species is difficult to forecast since three of four species studied here did not reach their optimum temperature in the wild, although their specialist performance characteristics may indicate a more rapid decline should optimum temperatures be exceeded.

Resurrection of Mycteronastes (Monogenoidea: Monocotylidae), with Description of Mycteronastes caalusi n. sp. from Olfactory Sacs of the Smalltooth Sawfish, Pristis pectinata (Pristiformes: Pristidae), in the Gulf of Mexico off Florida.

Mycteronastes Kearn and Beverley-Burton, 1990 (Monogenoidea: Monocotylidae: Merizocotylinae) was resurrected from subjective synonymy with Merizocotyle Cerfontaine, 1894 , and its diagnosis was emended to include monocotylids with a haptor lacking a central loculus and having 5 peripheral (2 bilateral pairs and an unpaired anteromedial loculus), 1 interhamular, and 17 marginal loculi. The 3 species of Mycteronastes accepted herein are parasitic within the olfactory sacs of rays and sawfishes: Mycteronastes icopae ( Beverley-Burton and Williams, 1989 ) Kearn and Beverley-Burton, 1990 (type species) from the giant shovelnose ray, Glaucostegus typus (Anonymous (Bennett)) (Glaucostegidae), in the southwestern Pacific Ocean; Mycteronastes undulatae Kearn and Beverley-Burton, 1990 from the undulate ray, Raja undulata Lacepède (Rajidae), in the northeastern Atlantic Ocean; and Mycteronastes caalusi n. sp. from the smalltooth sawfish, Pristis pectinata Latham (Pristidae), in the Gulf of Mexico. Mycteronastes caalusi is most easily differentiated from its congeners by the combination of having 2 median cephalic papillae, an oval haptor that is wider than the body proper and lacks a deeply scalloped margin, a comparatively large anteromedial peripheral loculus, an unsclerotized male copulatory organ that is wholly anterior to the vaginal pores, a relatively small distal portion of the uterus (ootype chamber) that is mostly anterior to the vaginae, and a delicate uterus. The present study is the first report of a monocotylid from the olfactory sacs of P. pectinata and the first record of a species of Mycteronastes from the Gulf of Mexico. Notes on the taxonomy and systematics of some species assigned to Calicotyle Diesing, 1850 (Monocotylidae: Calicotylinae) are included.

Facultative parthenogenesis in a critically endangered wild vertebrate.

Facultative parthenogenesis - the ability of sexually reproducing species to sometimes produce offspring asexually - is known from a wide range of ordinarily sexually reproducing vertebrates in captivity, including some birds, reptiles and sharks [1-3]. Despite this, free-living parthenogens have never been observed in any of these taxa in the wild, although two free-living snakes were recently discovered each gestating a single parthenogen - one copperhead (Agkistrodon contortrix) and one cottonmouth (Agkistrodon piscivorus) [1]. Vertebrate parthenogens are characterized as being of the homogametic sex (e.g., females in sharks, males in birds) and by having elevated homozygosity compared to their mother [1-3], which may reduce their viability [4]. Although it is unknown if either of the parthenogenetic snakes would have been carried to term or survived in the wild, facultative parthenogenesis might have adaptive significance [1]. If this is true, it is reasonable to hypothesize that parthenogenesis would be found most often at low population density, when females risk reproductive failure because finding mates is difficult [5]. Here, we document the first examples of viable parthenogens living in a normally sexually reproducing wild vertebrate, the smalltooth sawfish (Pristis pectinata). We also provide a simple approach to screen any microsatellite DNA database for parthenogens, which will enable hypothesis-driven research on the significance of vertebrate parthenogenesis in the wild.

Age and growth of endangered smalltooth sawfish (Pristis pectinata) verified with LA-ICP-MS analysis of vertebrae.

Endangered smalltooth sawfish (Pristis pectinata) were opportunistically sampled in south Florida and aged by counting opaque bands in sectioned vertebrae (n=15). Small sample size precluded traditional age verification, but fish collected in spring and summer had translucent vertebrae margins, while fish collected in winter had opaque margins. Trends in Sr:Ca measured across vertebrae with laser ablation-inductively coupled plasma-mass spectrometry corresponded well to annual salinity trends observed in sawfish estuarine nursery habitats in south Florida, thus serve as a chemical marker verifying annual formation of opaque bands. Based on that finding and assumptions about mean birth date and timing of opaque band formation, estimated age ranged from 0.4 y for a 0.60 m total length (TL) male to 14.0 y for a 4.35 m TL female. Von Bertalanffy growth parameters computed from size at age data were 4.48 m for L(∞), 0.219 y(-1)for k, and -0.81 y for t(0). Results of this study have important implications for sawfish conservation as well as for inferring habitat residency of euryhaline elasmobranchs via chemical analysis of vertebrae.

Genetic diversity despite population collapse in a critically endangered marine fish: the smalltooth sawfish (Pristis pectinata).

Sawfish (family Pristidae) are among the most critically endangered marine fish in the world, yet very little is known about how genetic bottlenecks, genetic drift, and inbreeding depression may be affecting these elasmobranchs. In the US Atlantic, the smalltooth sawfish (Pristis pectinata) has declined to 1-5% of its abundance in the 1900s, and its core distribution has contracted to southwest Florida. We used 8 polymorphic microsatellite markers to show that this remnant population still exhibits high genetic diversity in terms of average allelic richness (18.23), average alleles per locus (18.75, standard deviation [SD] 6.6) and observed heterozygosity (0.43-0.98). Inbreeding is rare (mean individual internal relatedness = -0.02, SD 0.14; F(IS) = -0.011, 95% confidence interval [CI] = -0.039 to 0.011), even though the estimated effective population size (N(e)) is modest (250-350, 95% CI = 142-955). Simulations suggest that the remnant smalltooth sawfish population will probably retain >90% of its current genetic diversity over the next century even at the lower estimate of N(e). There is no evidence of a genetic bottleneck accompanying last century's demographic bottleneck, and we discuss hypotheses that could explain this. We also discuss features of elasmobranch life history and population biology that could make them less vulnerable than other large marine vertebrates to genetic change associated with reduced population size.

Maternal meddling in neonatal sharks: implications for interpreting stable isotopes in young animals.

Stable isotopes of neonatal vertebrates reflect those of their mother's diet and foraging location. Evaluating feeding strategies and habitat use of neonates is consequently complicated by the maternal isotopic signal and its subsequent elimination with growth. Thus, methods that measure the loss of the maternal signal, i.e. when the isotopic signal of a neonate reflects its own diet, are needed. Values of δ(13)C and δ(15)N were measured in liver and muscle tissues of <1 year old bull (Carcharhinus leucas) and Atlantic sharpnose (Rhizoprionodon terraenovae) sharks and related to age using, total length, date sampled and umbilical scar stage (USS). We observed a decline in δ(13)C and δ(15)N values with age that was different among species, similar among isotopes, and greater in liver than in muscle; highlighting that retention of the maternal signal is dependent on species-specific life history and tissue characteristics. USS was most effective for assessing the loss of the maternal isotopic signal in the faster growing Atlantic sharpnose shark, but was less effective for the slower growing bull shark. Total length and date sampled were overall less effective and may be more informative for slower growing species when coupled with USS, as variable size at birth and misclassification of animals >1 year old, which remain in nursery habitats, increase the variability of the isotopic values. Consideration of the maternal signal and measuring its loss are thus necessary when analyzing the stable isotopes of young animals, as there is potential to misinterpret feeding strategies, over-estimate trophic position and incorrectly assign carbon source.

Environmental influences on the spatial ecology of juvenile smalltooth sawfish (Pristis pectinata): results from acoustic monitoring.

To aid recovery efforts of smalltooth sawfish (Pristis pectinata) populations in U.S. waters a research project was developed to assess how changes in environmental conditions within estuarine areas affected the presence, movements, and activity space of this endangered species. Forty juvenile P. pectinata were fitted with acoustic tags and monitored within the lower 27 km of the Caloosahatchee River estuary, Florida, between 2005 and 2007. Sawfish were monitored within the study site from 1 to 473 days, and the number of consecutive days present ranged from 1 to 125. Residency index values for individuals varied considerably, with annual means highest in 2005 (0.95) and lowest in 2007 (0.73) when several P. pectinata moved upriver beyond detection range during drier conditions. Mean daily activity space was 1.42 km of river distance. The distance between 30-minute centers of activity was typically <0.1 km, suggesting limited movement over short time scales. Salinity electivity analysis demonstrated an affinity for salinities between 18 and at least 24 psu, suggesting movements are likely made in part, to remain within this range. Thus, freshwater flow from Lake Okeechobee (and its effect on salinity) affects the location of individuals within the estuary, although it remains unclear whether or not these movements are threatening recovery.

Anthropogenic effects on the smalltooth sawfish (Pristis pectinata) in the United States.

Bycatch mortality in net fisheries was the major reason for the decline of the endangered smalltooth sawfish, Pristis pectinata, in the United States. These fisheries have been reduced or eliminated in some states including Florida--where most smalltooth sawfish are currently found in the United States. To determine whether other factors are still affecting this species, we obtained non-net fishery entanglement, injury, and mortality data by soliciting information from anyone who may have encountered this species. Smalltooth sawfish were damaged by marine pollution (e.g., polyvinyl chloride pipe, monofilament line, non-monofilament line) and injured by humans. Examples of injuries caused directly by humans include removal of rostra, shooting an individual with a powerhead, and shooting another with arrows. Many people are aware that the smalltooth sawfish is protected by state and federal laws, but some are still not aware of (or willing to accept) this status. The impacts of marine pollution and injuries directly caused by humans on this endangered species can be ameliorated by incorporating fisher education into the conservation and management processes.