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1.
Sensors (Basel) ; 24(5)2024 Feb 29.
Article in English | MEDLINE | ID: mdl-38475126

ABSTRACT

Underground displacement monitoring is a crucial means of preventing geological disasters. Compared to existing one-dimensional methods (measuring only horizontal or vertical displacement), the underground displacement three-dimensional measurement method and monitoring system proposed by the author's research team can more accurately reflect the internal movement of rock and soil mass, thereby improving the timeliness and accuracy of geological disaster prediction. To ensure the reliability and long-term operation of the underground displacement three-dimensional monitoring system, this article further introduces low-power design theory and Bluetooth wireless transmission technology into the system. By optimizing the power consumption of each sensing unit, the current during the sleep period of a single sensing unit is reduced to only 0.09 mA. Dynamic power management technology is employed to minimize power consumption during each detection cycle. By using Bluetooth wireless transmission technology, the original wired communication of the system is upgraded to a relay-type wireless network communication, effectively solving the problem of the entire sensing array's operation being affected when a single sensing unit is damaged. These optimized designs not only maintain monitoring accuracy (horizontal and vertical displacement errors not exceeding 1 mm) but also enable the monitoring system to operate stably for an extended period under harsh weather conditions.

2.
Nat Metab ; 6(2): 238-253, 2024 Feb.
Article in English | MEDLINE | ID: mdl-38278946

ABSTRACT

Biphasic glucose-stimulated insulin secretion (GSIS) is essential for blood glucose regulation, but a mechanistic model incorporating the recently identified islet ß cell heterogeneity remains elusive. Here, we show that insulin secretion is spatially and dynamically heterogeneous across the islet. Using a zinc-based fluorophore with spinning-disc confocal microscopy, we reveal that approximately 40% of islet cells, which we call readily releasable ß cells (RRßs), are responsible for 80% of insulin exocytosis events. Although glucose up to 18.2 mM fully mobilized RRßs to release insulin synchronously (first phase), even higher glucose concentrations enhanced the sustained secretion from these cells (second phase). Release-incompetent ß cells show similarities to RRßs in glucose-evoked Ca2+ transients but exhibit Ca2+-exocytosis coupling deficiency. A decreased number of RRßs and their altered secretory ability are associated with impaired GSIS progression in ob/ob mice. Our data reveal functional heterogeneity at the level of exocytosis among ß cells and identify RRßs as a subpopulation of ß cells that make a disproportionally large contribution to biphasic GSIS from mouse islets.


Subject(s)
Biphasic Insulins , Insulin-Secreting Cells , Mice , Animals , Insulin Secretion , Biphasic Insulins/metabolism , Glucose/pharmacology , Glucose/metabolism , Insulin-Secreting Cells/metabolism , Insulin/metabolism , Exocytosis/physiology
3.
Light Sci Appl ; 12(1): 298, 2023 Dec 14.
Article in English | MEDLINE | ID: mdl-38097537

ABSTRACT

In fluorescence microscopy, computational algorithms have been developed to suppress noise, enhance contrast, and even enable super-resolution (SR). However, the local quality of the images may vary on multiple scales, and these differences can lead to misconceptions. Current mapping methods fail to finely estimate the local quality, challenging to associate the SR scale content. Here, we develop a rolling Fourier ring correlation (rFRC) method to evaluate the reconstruction uncertainties down to SR scale. To visually pinpoint regions with low reliability, a filtered rFRC is combined with a modified resolution-scaled error map (RSM), offering a comprehensive and concise map for further examination. We demonstrate their performances on various SR imaging modalities, and the resulting quantitative maps enable better SR images integrated from different reconstructions. Overall, we expect that our framework can become a routinely used tool for biologists in assessing their image datasets in general and inspire further advances in the rapidly developing field of computational imaging.

4.
Opt Express ; 30(15): 26544-26556, 2022 Jul 18.
Article in English | MEDLINE | ID: mdl-36236843

ABSTRACT

A multifunctional design based on vanadium dioxide (VO2) metamaterial structure is proposed. Broadband absorption, linear-to-linear (LTL) polarization conversion, linear-to-circular (LTC) polarization conversion, and total reflection can be achieved based on the insulator-to-metal transition (IMT) of VO2. When the VO2 is in the metallic state, the multifunctional structure can be used as a broadband absorber. The results show that the absorption rate exceeds 90% in the frequency band of 2.17 - 4.94 THz, and the bandwidth ratio is 77.8%. When VO2 is in the insulator state, for the incident terahertz waves with a polarization angle of 45°, the structure works as a polarization converter. In this case, LTC polarization conversion can be obtained in the frequency band of 0.1 - 3.5 THz, and LTL polarization conversion also can be obtained in the frequency band of 3.5 - 6 THz, especially in the 3.755 - 4.856 THz band that the polarization conversion rate is over 90%. For the incident terahertz waves with a polarization angle of 0°, the metamaterial structure can be used as a total reflector. Additionally, impacts of geometrical parameters, incidence angle and polarization angle on the operating characteristics have also been investigated. The designed switchable multifunctional metasurfaces are promising for a wide range of applications in advanced terahertz research and smart applications.

5.
Sensors (Basel) ; 22(5)2022 Feb 23.
Article in English | MEDLINE | ID: mdl-35270871

ABSTRACT

Landslide is a very common and destructive geo-hazard, and displacement monitoring of it is integral for risk assessment and engineering prevention. Given the shortcomings of current landslide displacement monitor technologies, a new three-dimensional underground displacement monitoring technology is proposed based on the double mutual inductance voltage contour method. The underground displacement measuring device mainly consists of an information processing unit and sensing array, connected by power and RS-485 communication lines. An underground displacement measurement model to convert the double mutual inductance voltages and the inter-axis angle into the relative displacement between adjacent sensing units is established based on the interval-interpolation and contour-modeling. Under the control of the information processing unit, the relative displacement between any two adjacent sensing units can be calculated through the underground displacement measurement model, so as to obtain the total displacement from underground depth to surface, and the measurement data can be further sent to the Internet of things cloud platform through the 4G module; thus the remote real-time monitoring of underground displacement three-dimensional measurement for the rock and soil mass from underground depth to the surface is realized. The measurement model is verified by building an experimental platform to simulate the underground displacement of rock and soil mass. The experimental results show that for each measuring unit, when the horizontal displacement and vertical displacement are within the measurement range of 0-50 mm, the maximum measurement error will not exceed 1 mm, which can meet the accuracy requirements of underground displacement monitoring of landslide.

7.
Appl Opt ; 61(35): 10451-10457, 2022 Dec 10.
Article in English | MEDLINE | ID: mdl-36607105

ABSTRACT

In this paper, a novel, to the best of our knowledge, polymer-based negative curvature ring-core fiber (NC-RCF) is proposed and investigated. The hollow-core NC-RCF is composed of TOPAS as background material. The inner and outer negative curvature structure layers are connected to the annular area, and the orbital angular momentum (OAM) modes can propagate in the annular core. In the frequency region of 1.0-1.5 THz, the designed NC-RCF can stably transmit 82 OAM modes. Investigation results indicate that the effective refractive index differences between the corresponding HE and EH modes are above 10-4. The confinement losses of EH or HE modes are smaller than 10-8 d B/m, and the dispersion variations are lower than 0.31 ps/THz/cm. Effective mode areas are larger than 5.14m m 2. Additionally, the highest mode purity of all vector modes is 99.78%. In addition, modal birefringence, also known as the walk-off length, has also been discussed. All these operation performances indicate that the designed NC-RCF make contributions to the optical communication systems.

8.
Nat Biotechnol ; 40(4): 606-617, 2022 04.
Article in English | MEDLINE | ID: mdl-34782739

ABSTRACT

A main determinant of the spatial resolution of live-cell super-resolution (SR) microscopes is the maximum photon flux that can be collected. To further increase the effective resolution for a given photon flux, we take advantage of a priori knowledge about the sparsity and continuity of biological structures to develop a deconvolution algorithm that increases the resolution of SR microscopes nearly twofold. Our method, sparse structured illumination microscopy (Sparse-SIM), achieves ~60-nm resolution at a frame rate of up to 564 Hz, allowing it to resolve intricate structures, including small vesicular fusion pores, ring-shaped nuclear pores formed by nucleoporins and relative movements of inner and outer mitochondrial membranes in live cells. Sparse deconvolution can also be used to increase the three-dimensional resolution of spinning-disc confocal-based SIM, even at low signal-to-noise ratios, which allows four-color, three-dimensional live-cell SR imaging at ~90-nm resolution. Overall, sparse deconvolution will be useful to increase the spatiotemporal resolution of live-cell fluorescence microscopy.


Subject(s)
Algorithms , Imaging, Three-Dimensional , Imaging, Three-Dimensional/methods , Microscopy, Fluorescence/methods
9.
Ageing Res Rev ; 67: 101306, 2021 05.
Article in English | MEDLINE | ID: mdl-33610814

ABSTRACT

Extrachromosomal circular DNA (eccDNA) accumulates within the nucleus of eukaryotic cells during physiological aging and in age-related diseases (ARDs) and the accumulation could be caused by the declined exclusion of nuclear eccDNA in these states. This review focuses on the formation of eccDNA and the roles of some main factors, such as nuclear pore complexes (NPCs), nucleoplasmic reticulum (NR), and nuclear actin, in eccDNA exclusion. eccDNAs are mostly formed from non-coding DNA during DNA damage repair. They move to NPCs along nuclear actin and are excluded out of the nucleus through functional NPCs in young and healthy cells. However, it has been demonstrated that defective NPCs, abnormal NPC components and nuclear actin rods are increased in aged cells, various cancers and certain other ARDs such as cardiovascular diseases, premature aging, neurodegenerative diseases and myopathies. Therefore, mainly resulting from the increase of dysfunctional NPCs, the exclusion of nuclear eccDNAs may be reduced and eccDNAs thus accumulate within the nucleus in aging and the aforementioned ARDs. In addition, the protective function of non-coding DNA in tumorigenesis is further discussed.


Subject(s)
DNA, Circular , DNA , Aged , Aging/genetics , Cell Nucleus , Humans
10.
Opt Lett ; 46(3): 604, 2021 Feb 01.
Article in English | MEDLINE | ID: mdl-33528419

ABSTRACT

This publisher's note contains corrections to Opt. Lett.46, 290 (2021)OPLEDP0146-959210.1364/OL.412229.

11.
Opt Lett ; 46(2): 290-293, 2021 Jan 15.
Article in English | MEDLINE | ID: mdl-33449010

ABSTRACT

At present, most of the gradient metasurfaces used to construct surface plasmon polaritons (SPPs)/spoof SPPs (SSPs) couplers are usually compact metal antennas working under reflection and transmission. In reflection mode, meta-couplers link propagating waves and surface waves (SWs), and SWs will undergo significant scattering before coupling to an Eigen SPP in the target system. In transmission mode, metal meta-couplers will encounter complex multilayer designing at the microwave/terahertz region and metal absorption loss at optical frequencies. In this Letter, to the best of our knowledge, a novel design using dielectric gradient metasurfaces instead of metal metasurface couplers is proposed to excite broadband SSPs on the metal groove array. We demonstrate that the well-designed phase dielectric gradient metasurface converts the normal incident terahertz wave to the predetermined angle in the dielectric substrate and then excites the broadband SSPs with the transmission coupling between the dielectric meta-coupler and SSPs surface. This research may open up new avenues in simple and broadband plane dielectric meta-couplers for SSPs in ultra-thin and compact functional devices for versatile applications.

12.
Sensors (Basel) ; 20(6)2020 Mar 18.
Article in English | MEDLINE | ID: mdl-32197396

ABSTRACT

Deep displacement monitoring of rock and soil mass is the focus of current geological hazard research. In the previous works, we proposed a geophysical deep displacement characteristic information detection method by implanting magneto-electric sensing arrays in boreholes, and preliminarily designed the sensor prototype and algorithm of deep displacement three-dimensional (3D) measurement. On this basis, we optimized the structure of the sensing unit through 3D printing and other technologies, and improved the shape and material parameters of the permanent magnet after extensive experiments. Through in-depth analysis of the experimental data, based on the data query algorithm and the polynomial least square curve fitting theory, a new mathematical model for 3D measurement of deep displacement has been proposed. By virtue of it, the output values of mutual inductance voltage, Hall voltage and tilt measuring voltage measured by the sensing units can be converted into the variations of relative horizontal displacement, vertical displacement and axial tilt angle between any two adjacent sensing units in real time, and the measuring errors of horizontal and vertical displacement are tested to be 0-1.5 mm. The combination of structural optimization and measurement method upgrading extends the measurement range of the sensing unit from 0-30 mm to 0-50 mm. It shows that our revised deep displacement 3D measuring sensor can better meet the needs of high-precision monitoring at the initial stage of rock and soil deformation and large deformation monitoring at the rapid change and imminent-sliding stage.

13.
Biogerontology ; 20(6): 741-761, 2019 12.
Article in English | MEDLINE | ID: mdl-31473864

ABSTRACT

Aging is a progressive decline of physiological function in tissue and organ accompanying both accumulation of DNA damage and reduction of non-coding DNA. Peripheral non-coding DNA/heterochromatin has been proposed to protect the genome and centrally-located protein-coding sequences in soma and male germ cells against radiation and the invasion of exogenous nucleic acids. Therefore, this review summarizes the reduction of non-coding DNA/heterochromatin (including telomeric DNA and rDNA) and DNA damage accumulation during normal physiological aging and in various aging-related diseases. Based on analysis of data, it is found that DNA damage accumulation is roughly negatively correlated with the reduction of non-coding DNA and therefore speculated that DNA damage accumulation is likely due to the reduction of non-coding DNA protection in genome defense during aging. Therefore, it is proposed here that means to increase the total amount of non-coding DNA and/or heterochromatin prior to the onset of these diseases could potentially better protect the genome and protein-coding DNA, reduce the incidence of aging-related diseases, and thus lead to better health during aging.


Subject(s)
Aging/genetics , DNA Damage , DNA/genetics , Heart Diseases/genetics , Heterochromatin/genetics , Humans , Neoplasms/genetics , Telomere
14.
Cytotechnology ; 71(1): 23-33, 2019 Feb.
Article in English | MEDLINE | ID: mdl-30607648

ABSTRACT

The tumor suppressor DLEC1 has been shown to promote cell proliferation when AP-2α2 is down-regulated in HCT116 stable clones, suggesting its pro-survival nature. However, the pro-survival function of DLEC1 has not been confirmed in other cells and its underlying mechanisms remain elusive. Therefore, we knocked down DLEC1 in a panel of cell lines and found that DLEC1 depletion caused various extents of cell death through intrinsic pathway. DLEC1 overexpression promoted cell survival and reduced cell death in cancer cells after 5-FU treatment, while DLEC1 down-regulation sensitized cancer cells to 5-FU. Further studies demonstrated that DLEC1 attenuated the increase in cleaved PARP, caspase-3 and caspase-7, the activity of caspase-9 and the diffusion of cytosolic cytochrome c from mitochondria. Our data also showed that BCL-XL was up-regulated by DLEC1 in stable clones after 5-FU treatment. Altogether, these results indicated that DLEC1 protects cells against cell death induced by 5-FU through the attenuation of active proteins in caspase cascade and the up-regulation of BCL-XL. Therefore, DLEC1 can be a pro-survival protein under certain circumstances and a potential therapeutic target for increasing sensitivity of cancer cells to 5-FU.

15.
Epigenomics ; 10(4): 499-517, 2018 04 01.
Article in English | MEDLINE | ID: mdl-29616594

ABSTRACT

Peripheral and abundant noncoding DNA has been hypothesized to protect the genome and the central protein-coding sequences against DNA damage in somatic genome. In the cytosol, invading exogenous nucleic acids may first be deactivated by small RNAs encoded by noncoding DNA via mechanisms similar to the prokaryotic CRISPR-Cas system. In the nucleus, the radicals generated by radiation in the cytosol, radiation energy and invading exogenous nucleic acids are absorbed, blocked and/or reduced by peripheral heterochromatin, and damaged DNA in heterochromatin is removed and excluded from the nucleus to the cytoplasm through nuclear pore complexes. To further strengthen the hypothesis, this review summarizes the experimental evidence supporting the protective function of noncoding DNA in the genome of male germ cells. Based on these data, this review provides evidence supporting the protective role of noncoding DNA in the genome defense of sperm genome through similar mechanisms to those of the somatic genome.


Subject(s)
DNA/physiology , Spermatozoa/metabolism , Animals , Cell Nucleus/genetics , Cytosol/metabolism , DNA Damage , Embryo, Mammalian , Gene Silencing , Genome , Humans , Male , RNA, Small Untranslated/metabolism , Spermatozoa/radiation effects , Telomere Homeostasis
16.
Theranostics ; 8(1): 61-77, 2018.
Article in English | MEDLINE | ID: mdl-29290793

ABSTRACT

Rationale: Oncogenic STAT3 signaling activation and 3p22-21.3 locus alteration are common in multiple tumors, especially carcinomas of the nasopharynx, esophagus and lung. Whether these two events are linked remains unclear. Our CpG methylome analysis identified a 3p22.2 gene, DLEC1, as a methylated target in esophageal squamous cell (ESCC), nasopharyngeal (NPC) and lung carcinomas. Thus, we further characterized its epigenetic abnormalities and functions. Methods: CpG methylomes were established by methylated DNA immunoprecipitation. Promoter methylation was analyzed by methylation-specific PCR and bisulfite genomic sequencing. DLEC1 expression and clinical significance were analyzed using TCGA database. DLEC1 functions were analyzed by transfections followed by various cell biology assays. Protein-protein interaction was assessed by docking, Western blot and immunoprecipitation analyses. Results: We defined the DLEC1 promoter within a CpG island and p53-regulated. DLEC1 was frequently downregulated in ESCC, lung and NPC cell lines and primary tumors, but was readily expressed in normal tissues and immortalized normal epithelial cells, with mutations rarely detected. DLEC1 methylation was frequently detected in ESCC tumors and correlated with lymph node metastasis, tumor recurrence and progression, with DLEC1 as the most frequently methylated among the established 3p22.2 tumor suppressors (RASSF1A, PLCD1 and ZMYND10/BLU). DLEC1 inhibits carcinoma cell growth through inducing cell cycle arrest and apoptosis, and also suppresses cell metastasis by reversing epithelial-mesenchymal transition (EMT) and cell stemness. Moreover, DLEC1 represses oncogenic signaling including JAK/STAT3, MAPK/ERK, Wnt/ß-catenin and AKT pathways in multiple carcinoma types. Particularly, DLEC1 inhibits IL-6-induced STAT3 phosphorylation in a dose-dependent manner. DLEC1 contains three YXXQ motifs and forms a protein complex with STAT3 via protein docking, which blocks STAT3-JAK2 interaction and STAT3 phosphorylation. IL-6 stimulation enhances the binding of DLEC1 with STAT3, which diminishes their interaction with JAK2 and further leads to decreased STAT3 phosphorylation. The YXXQ motifs of DLEC1 are crucial for its inhibition of STAT3 phosphorylation, and disruption of these motifs restores STAT3 phosphorylation through abolishing DLEC1 binding to STAT3. Conclusions: Our study demonstrates, for the first time, predominant epigenetic silencing of DLEC1 in ESCC, and a novel mechanistic link of epigenetic DLEC1 disruption with oncogenic STAT3 signaling in multiple carcinomas.


Subject(s)
Epigenomics/methods , Esophageal Neoplasms/genetics , Promoter Regions, Genetic/genetics , STAT3 Transcription Factor/metabolism , Tumor Suppressor Protein p53/metabolism , Aged , Alternative Splicing/genetics , Alternative Splicing/physiology , CpG Islands/genetics , DNA Methylation/genetics , DNA Methylation/physiology , Epithelial-Mesenchymal Transition/genetics , Epithelial-Mesenchymal Transition/physiology , Female , Gene Expression Regulation, Neoplastic/genetics , Gene Expression Regulation, Neoplastic/physiology , Humans , Male , Middle Aged , Phosphorylation , STAT3 Transcription Factor/genetics , Tumor Suppressor Protein p53/genetics , Tumor Suppressor Proteins/genetics
17.
Epigenomics ; 9(11): 1469-1483, 2017 11.
Article in English | MEDLINE | ID: mdl-28972397

ABSTRACT

Traditionally, the genome has been described as the 'book of life'. However, the metaphor of a book may not reflect the dynamic nature of the structure and function of the genome. In the eukaryotic genome, the number of centrally located protein-coding sequences is relatively constant across species, but the amount of noncoding DNA increases considerably with the increase of organismal evolutional complexity. Therefore, it has been hypothesized that the abundant peripheral noncoding DNA protects the genome and the central protein-coding sequences in the eukaryotic genome. Upon comparison with the habitation, sociality and defense mechanisms of a social insect colony, it is found that the genome is similar to a social insect colony in various aspects. A social insect colony may thus be a better metaphor than a book to describe the spatial organization and physical functions of the genome. The potential implications of the metaphor are also discussed.


Subject(s)
Genome , Models, Genetic , Animals , Cell Nucleus/genetics , Evolution, Molecular , Humans , Open Reading Frames , Regulatory Sequences, Nucleic Acid/genetics
18.
Vaccine ; 35(10): 1417-1423, 2017 03 07.
Article in English | MEDLINE | ID: mdl-28187951

ABSTRACT

Haemophilus parasuis (H. parasuis) is the etiological agent of swine Glässer's disease, which leads to significant economic loss in swine industry over the world. Subunit vaccine based on outer membrane protein is one of the promising choices to protect pigs against H. parasuis infection despite low immunity efficiency. In this paper, outer membrane protein 16 (Omp16) of H. parasuis encapsulated by alginate-chitosan microspheres as antigen carriers was explored for the first time in a mouse model. Our results showed that the microspheres with Omp16 induced significant higher H. parasuis-specific antibodies, and higher titers of IL-2, IL-4, and IFN-γ than those by Omp16-FIA in treated mice (p<0.05). Moreover, H. parasuis load in the tissues from liver, spleen, and lung of mice immunized with microspheres containing Omp16 was significantly decreased (p<0.05) than that in the same counterpart tissues of control groups. In addition, 80% mice treated with Omp16 and 70% mice with Omp16-FIA were survived after challenged with H. parasuis virulent strain LY02 (serovar 5). Therefore, Omp16-based microsphere vaccine induces both humoral and cellular immune responses and provides promising protection against H. parasuis infection in mice.


Subject(s)
Antigens, Bacterial/immunology , Bacterial Outer Membrane Proteins/immunology , Drug Carriers/administration & dosage , Haemophilus Infections/veterinary , Haemophilus Vaccines/immunology , Haemophilus parasuis/immunology , Swine Diseases/prevention & control , Alginates/administration & dosage , Animal Structures/microbiology , Animals , Antibodies, Bacterial/blood , Antigens, Bacterial/administration & dosage , Bacterial Load , Bacterial Outer Membrane Proteins/administration & dosage , Chitosan/administration & dosage , Cytokines/metabolism , Disease Models, Animal , Glucuronic Acid/administration & dosage , Haemophilus Infections/microbiology , Haemophilus Infections/prevention & control , Haemophilus Vaccines/administration & dosage , Hexuronic Acids/administration & dosage , Immunity, Cellular , Immunity, Humoral , Leukocytes, Mononuclear/immunology , Mice, Inbred BALB C , Microspheres , Survival Analysis , Swine , Treatment Outcome , Vaccines, Subunit/administration & dosage , Vaccines, Subunit/immunology
19.
Guang Pu Xue Yu Guang Pu Fen Xi ; 36(3): 681-5, 2016 Mar.
Article in Chinese | MEDLINE | ID: mdl-27400505

ABSTRACT

To investigate the Terahertz's application prospect, corn, wheat husk and reed were used to detect their Terahertz Time Domain Spectroscopy, and be compared with that of cellulose powder. The experimental results show that all of their absorption peaks exist at 1.75, 1.62, 1.1, and 0.7 THz. Absorption intensity of cellulose powder, corn, wheat husk and reed were compared in some frequencies points. It finds that corn, wheat husk and reed have higher absorption intensity than cellulose powder in early frequency domain. However, absorption intensity of cellulose powder is the strongest at 1.62 THz. Cellulose content in corn, wheat husk and reed were detected by using the method of chemical analysis. The peaks of absorption coefficient are related to their cellulose content at this frequency. It shows that plant cellulose occur lattice vibration in the frequency. Deformation, bending, flexing, and other changes appear to their functional keys. Quantum chemical calculation was carried out by using density functional theory to cellulose and the structure diagram of cellulose molecular formula was obtained. It also finds some absorption peaks exist at 0.7, 1.1, and 1.75 THz. Characterization of cellulose clusters mainly includes CH2, OH, CH, and so on. Glucose hydroxyl radical on the ring is active in the cellulose chain. Where hydroxyl related chemical reaction can occur, Hydroxyl can also be integrated into the intermolecular and intramolecular hydrogen bond. Terahertz wave can promote hydrogen bond vibration. This kind of vibration is weak in the intermolecular interaction. The vibration and rotating happen in dipole transition. The crystal lattice rotates and is absorptive in low frequency, and large molecular skeleton vibrates. All of them can show different intensity and position of the absorption peak in the terahertz band. Corn and cellulose were analyzed by infrared spectrum. The reverse and vibration mode of cellulose was discussed. The absorption peak is basically in line with its theoretical calculating result. It is feasible that Terahertz Time Domain Spectroscopy can detect cellulose, and it provides a new method for the detection and judgement of cellulose in plants.


Subject(s)
Cellulose/chemistry , Spectrophotometry, Infrared , Terahertz Spectroscopy , Hydrogen Bonding , Triticum/chemistry , Vibration , Zea mays/chemistry
20.
Mutat Res Rev Mutat Res ; 767: 31-41, 2016.
Article in English | MEDLINE | ID: mdl-27036064

ABSTRACT

In this review, the protective function of the abundant non-coding DNA in the eukaryotic genome is discussed from the perspective of genome defense against exogenous nucleic acids. Peripheral non-coding DNA has been proposed to act as a bodyguard that protects the genome and the central protein-coding sequences from ionizing radiation-induced DNA damage. In the proposed mechanism of protection, the radicals generated by water radiolysis in the cytosol and IR energy are absorbed, blocked and/or reduced by peripheral heterochromatin; then, the DNA damage sites in the heterochromatin are removed and expelled from the nucleus to the cytoplasm through nuclear pore complexes, most likely through the formation of extrachromosomal circular DNA. To strengthen this hypothesis, this review summarizes the experimental evidence supporting the protective function of non-coding DNA against exogenous nucleic acids. Based on these data, I hypothesize herein about the presence of an additional line of defense formed by small RNAs in the cytosol in addition to their bodyguard protection mechanism in the nucleus. Therefore, exogenous nucleic acids may be initially inactivated in the cytosol by small RNAs generated from non-coding DNA via mechanisms similar to the prokaryotic CRISPR-Cas system. Exogenous nucleic acids may enter the nucleus, where some are absorbed and/or blocked by heterochromatin and others integrate into chromosomes. The integrated fragments and the sites of DNA damage are removed by repetitive non-coding DNA elements in the heterochromatin and excluded from the nucleus. Therefore, the normal eukaryotic genome and the central protein-coding sequences are triply protected by non-coding DNA against invasion by exogenous nucleic acids. This review provides evidence supporting the protective role of non-coding DNA in genome defense.


Subject(s)
Clustered Regularly Interspaced Short Palindromic Repeats/genetics , DNA Damage/genetics , DNA, Circular/genetics , DNA, Viral/genetics , RNA, Small Untranslated/genetics , Active Transport, Cell Nucleus/physiology , Animals , Cell Nucleus/metabolism , Cytosol/metabolism , DNA/genetics , DNA Damage/radiation effects , Heterochromatin/genetics , Humans , Nucleic Acids/genetics , Retroviridae/genetics , Retroviridae/pathogenicity , Water/metabolism
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