Evidence of SARS-CoV-2 infection in companion animals from owners who tested positive for COVID-19 in the Valley of Mexico.

BACKGROUND: Little is known about the companion animals which tested positive in Mexico for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection. Due to this, it is that we have documented the infection of companion animals, via an exploratory approach in two localities of the Valley of Mexico, in which the companion animal owners tested positive for COVID-19. METHODS: Oropharyngeal and nasopharyngeal swabs were collected from 21 companion animals. Also, a Reverse-Transcription Quantitative Polymerase Chain Reaction was used to test five probes in three SARS-CoV-2 genes. More than one-third (5/14) of these samples were positive for SARS CoV-2 corresponding to dogs. RESULTS: This research translates into the first available report on companion animals with SARS-CoV-2 infection in the most populated area of Mexico. Samples were added chronologically to previous reports prepared in other areas of the country, from February through November 2022. CONCLUSION: Although SARS-CoV-2 infection in dogs is not as common as in other animals, our results suggest that it can be transmitted to dogs by their owners to a greater extent than previously reported.

Morphological variation of leaf traits in the Ternstroemia lineata species complex (Ericales: Penthaphylacaceae) in response to geographic and climatic variation.

Variation in leaf morphology is correlated with environmental variables, such as precipitation, temperature and soil composition. Several studies have pointed out that individual plasticity can largely explain the foliar phenotypic differences observed in populations due to climatic change and have suggested that the environment plays an important role in the evolution of plant species by selecting for phenotypic variation. Thus, the study of foliar morphology in plant populations can help us identify the environmental factors that have potentially influenced the process of species diversification. In this study, we analyzed morphological variation in the leaf traits of the Ternstroemia lineata species complex (Penthaphylacaceae) and its relation to climatic variables across the species distribution area to identify the patterns of morphological differentiation within this species complex. Based on the collected leaves of 270 individuals from 32 populations, we analyzed nine foliar traits using spatial interpolation models and multivariate statistics. A principal component analysis identified three main morphological traits (leaf length and two leaf shape variables) that were used to generate interpolated surface maps to detect discrete areas delimited by zones of rapid change in the values of the morphological traits. We identified a mosaic coarse-grain pattern of geographical distribution in the variation of foliar traits. According to the interpolation maps, we could define nine morphological groups and their geographic distributions. Longer leaves, spatulate leaves and the largest foliar area were located in sites with lower precipitation and higher seasonality of precipitation following a northwest-southeast direction and following significant latitudinal and longitudinal gradients. According to the phenogram of the relationships of the nine morphological groups based on morphological similarity, the putative species and subspecies of the T. lineata species complex did not show a clear pattern of differentiation. In this study, we found a complex pattern of differentiation with some isolated populations and some other contiguous populations differentiated by different traits. Further genetic and systematic studies are needed to clarify the evolutionary relationships in this species complex.

Influence of phylogenetic structure and climate gradients on geographical variation in the morphology of Mexican flycatcher forests assemblages (Aves: Tyrannidae).

Morphological variation is strongly related to variation in the ecological characteristics and evolutionary history of each taxon. To explore how geographical variation in morphology is related to different climatic gradients and phylogenetic structure, we analyzed the variation of morphological traits (body size, bill, and wing) of 64 species of tyrant flycatchers (Tyrannidae) distributed in Mexico. We measured these morphological traits in specimens from biological collections and related them to the climatic and topographic data of each collection locality. We performed the analyses separately at two levels: (1) the regional level and (2) the assemblage level, which was split into (assemblage I) lowland forests and (assemblage II) highland forests and other vegetation types. We also calculated the phylogenetic structure of flycatchers of each locality in order to explore the influence of climatic variables and the phylogenetic structure on the morphological variation of tyrant flycatchers, by means of linear mixed-effects models. We mapped the spatial variation of the relationship between morphological traits and environmental gradients, taking into account the phylogenetic structure. Important climatic variables explaining the morphological variation were those of temperature ranges (seasonality) and the results suggest that the phylogenetic clustering increases towards the highlands of Sierra Madre Oriental and Sierra Madre del Sur, and the lowlands of Balsas Depression. For the regional level, the spatial distribution of body size showed a pattern coincident with Bergmann's rule, with increasing in size from south to north. In the tropical lowland forests assemblage, body size tend to increase in seasonally dry forests (western Mexico) and decrease in the humid ones (eastern Mexico). In the assemblage of highland forests and other types of vegetation, morphological trait values increased northeast to southwest. Phylogenetic structure helped to explain the variation of morphology at the assemblage level but not at the regional level. The patterns of trait variation in the lowland and highland assemblages suggest that parts of morphological variation are explained both by the climatic gradients and by the lineage relatedness of communities. Overall, our results suggest that morphological variation is best explained by a varied set of variables, and that regression models representing this variation, as well as integrating phylogenetic patterns at different community levels, provide a new understanding of the mechanisms underlying the links among biodiversity, its geographical setting, and environmental change.

First report of "Candidatus Rickettsia amblyommii" in west coast of Mexico.

We report the first case of "Candidatus Rickettsia amblyommii" detected in Amblyomma mixtum ticks on humans on the west coast of Mexico. This is the most western record of "Ca. R. amblyommii" in the Western Hemisphere, representing the first record for the western coast of the Americas. Even if the record is far from the previously known locations for the species it does not represent a new record regarding temperature, precipitation and topographic parameters. Since "Ca. R. amblyommii" antibodies have been detected in patients suspected of Rocky Mountain spotted fever, and the tick A. mixtum has been associated with humans, it is important to consider "Ca. R. amblyommii" as a potential risk for the human population that has not been considered at risk before.

Alfredo Dugès' type specimens of amphibians and reptiles revisited.

The type specimens of amphibians and reptiles of the Museo de Historia Natural Alfredo Dugès, at the University of Guanajuato (MADUG) were reviewed following Smith & Necker's (1943) summary. Owing to this collection's eventful history and its historical importance as the oldest herpetological collection in Mexico, a review of its conservation status was needed. After many years, the collection has received proper recognition at the University of Guanajuato with a portion of the herpetological types considered "Precious Assets" of the university. We found 34 type specimens pertaining to 18 taxa; six are additional specimens to those previously reported; six herpetological types are missing, including the body of the type of Adelophis copei. All specimens are in good to reasonable condition except for the type of Rhinocheilus antonii, which has dried out completely. All specimens are illustrated to show their condition.

Distribución geográfica y hábitat de la familia Trochilidae (Aves) en el estado de Guerrero, México / Geographical distribution and habitat of Trochilidae (Aves) in the state of Guerrero, Mexico

ResumenLa distribución y abundancia de la familia Trochillidae generalmente estan influenciadas por la floración y fenología de las plantas de las que se alimentan, principalmente en bosques primarios, por lo que los cambios en la cobertura de la vegetación pueden afectar a sus poblaciones. Se analizó la distribución geográfica y se caracterizó el hábitat para 22 especies residentes de colibríes presentes en el estado de Guerrero con base en el uso de suelo y vegetación de INEGI Serie IV (2007-2010). Los modelos de distribución se generaron con ayuda del Algoritmo Genético para la Producción de Conjuntos de Reglas (GARP), usando los registros históricos de colecciones científicas y trabajo de campo (2001-2009), en combinación con variables climáticas y topográficas. De las 22 especies modeladas, seis son endémicas a México, mismo número de especies que se encuentran en alguna categoría de riesgo. La mayor concentración potencial de la riqueza (14-20 especies), endemismo (5-6 especies) y especies en riesgo de colibríes (5-6 especies) está en la provincia biótica de la Sierra Madre del Sur. No obstante, la distribución potencial de la mayor parte de los colibríes se presenta en ambientes alterados o agroecosistemas resultado de los cambios en el uso del suelo. Solo en el caso de Campylopterus hemileucurus, Lamprolaima rhami y Heliomaster longisrostris, su distribución potencial es mayor en áreas de vegetación primaria. Las áreas de mayor concentración de colibríes no corresponden con las Áreas de Importancia para la Conservación de las Aves en Guerrero, lo que confirma que pese a su diversidad y su extrema popularidad, desde la perspectiva conservacionista los colibríes han recibido relativamente poca atención.

AbstractThe distribution and abundance of species of Trochillidae family is usually influenced by the flowering and phenology of plants used as a feeding source, mainly in primary forest, so that changes in vegetation cover could impact their populations. We analyzed and characterized the geographical distribution and habitat for 22 species of resident hummingbirds in the state of Guerrero using the vegetation and the land use map of INEGI Series IV (2007-2010). Distribution models were generated with the Genetic Algorithm for Rule Set Production (GARP), using historical records of scientific collections and fieldwork (2001-2009), in combination with climatic and topographic variables. Of the 22 modeled species, six are endemic to Mexico, the same number of species found in a risk category. The highest concentration with regards to richness (14-20 species), endemism (5-6 species) and number of threatened species of hummingbirds (5-6 species) occurred in the biotic province of Sierra Madre del Sur. However, the potential distribution of most of the hummingbirds occurred in disturbed sites or agroecosystems, as a result of changes in land-use. For Campylopterus hemileucurus, Lamprolaima rhami and Heliomaster longisrostris, their potential distribution was highest in areas of primary vegetation. Areas of high hummingbirds presence do not coincide with the Important Bird Areas proposed for bird conservation in Guerrero, considering that, despite its diversity and its extreme popularity, from the conservation perspective hummingbirds have received relatively little attention. Rev. Biol. Trop. 64 (1): 363-376. Epub 2016 March 01.

Phylogenetic and morphologic evidence confirm the presence of a new montane cloud forest associated bird species in Mexico, the Mountain Elaenia (Elaenia frantzii; Aves: Passeriformes: Tyrannidae).

Here we provide evidence to support an extension of the recognized distributional range of the Mountain Elaenia (Elaenia frantzii) to include southern Mexico. We collected two specimens in breeding condition in northwestern Sierra Norte de Chiapas, Mexico. Morphologic and genetic evidence support their identity as Elaenia frantzii. We compared environmental parameters of records across the entire geographic range of the species to those at the northern Chiapas survey site and found no climatic differences among localities.

[Geographical distribution and habitat of Trochilidae (Aves) in the state of Guerrero, Mexico]. / Distribución geográfica y habitat de la familia Trochillidae (Aves) en el estado de Guerrero, México.

The distribution and abundance of species of Trochillidae family is usually influenced by the flowering and phenology of plants used as a feeding source, mainly in primary forest, so that changes in vegetation cover could impact their populations. We analyzed and characterized the geographical distribution and habitat for 22 species of resident hummingbirds in the state of Guerrero using the vegetation and the land use map of INEGI Series IV (2007-2010). Distribution models were generated with the Genetic Algorithm for Rule Set Production (GARP), using historical records of scientific collections and fieldwork (2001-2009), in combination with climatic and topographic variables. Of the 22 modeled species, six are endemic to Mexico, the same number of species found in a risk category. The highest concentration with regards to richness (14-20 species), endemism (5-6 species) and number of threatened species of hummingbirds (5-6 species) occurred in the biotic province of Sierra Madre del Sur. However, the potential distribution of most of the hummingbirds occurred in disturbed sites or agroecosystems, as a result of changes in land-use. For Campylopterus hemileucurus, Lamprolaima rhami and Heliomaster longisrostris, their potential distribution was highest in areas of primary vegetation. Areas of high hummingbirds presence do not coincide with the Important Bird Areas proposed for bird conservation in Guerrero, considering that, despite its diversity and its extreme popularity, from the conservation perspective hummingbirds have received relatively little attention.

Leptospirosis in Mexico: Epidemiology and Potential Distribution of Human Cases.

BACKGROUND: Leptospirosis is widespread in Mexico, yet the potential distribution and risk of the disease remain unknown. METHODOLOGY/PRINCIPAL FINDINGS: We analysed morbidity and mortality according to age and gender based on three sources of data reported by the Ministry of Health and the National Institute of Geography and Statics of Mexico, for the decade 2000-2010. A total of 1,547 cases were reported in 27 states, the majority of which were registered during the rainy season, and the most affected age group was 25-44 years old. Although leptospirosis has been reported as an occupational disease of males, analysis of morbidity in Mexico showed no male preference. A total number of 198 deaths were registered in 21 states, mainly in urban settings. Mortality was higher in males (61.1%) as compared to females (38.9%), and the case fatality ratio was also increased in males. The overall case fatality ratio in Mexico was elevated (12.8%), as compared to other countries. We additionally determined the potential disease distribution by examining the spatial epidemiology combined with spatial modeling using ecological niche modeling techniques. We identified regions where leptospirosis could be present and created a potential distribution map using bioclimatic variables derived from temperature and precipitation. Our data show that the distribution of the cases was more related to temperature (75%) than to precipitation variables. Ecological niche modeling showed predictive areas that were widely distributed in central and southern Mexico, excluding areas characterized by extreme climates. CONCLUSIONS/SIGNIFICANCE: In conclusion, an epidemiological surveillance of leptospirosis is recommended in Mexico, since 55.7% of the country has environmental conditions fulfilling the criteria that favor the presence of the disease.

New wildlife hosts of Leptospira interrogans in Campeche, Mexico.

Leptospira interrogans has been identified to cause leptospirosis, a widespread zoonotic disease that has been identified in domestic and wild animals. This work analyzed kidneys from two species of wild rodents from the state of Campeche, Mexico. Analyses were made by PCR using specific primers for detection of Leptospira interrogans DNA. The rodent species that tested positive were Heteromys gaumeri and Ototylomys phyllotis, both of which are new hosts for the bacteria in Southeastern Mexico. These records provide new insights into the disease's transmission that should be studied carefully in order to identify other potential host species, including humans, which are at risk of becoming infected if they are in contact with infected wildlife.

[Biogeographic regionalization of the mammals of tropical evergreen forests in Mesoamerica]. / Regionalización biogeográfica de la mastofauna de los bosques tropicales perennifolios de Mesoamérica.

Mesoamerica is a biologically complex zone that expands from Southern Mexico to extreme Northern Colombia. The biogeographical patterns and relationships of the mammalian fauna associated to the Mesoamerican Tropical Evergreen Forest (MTEF) are poorly understood, in spite of the wide distribution of this kind of habitat in the region. We compiled a complete georeferenced database of mammalian species distributed in the MTEF of specimens from museum collections and scientific literature. This database was used to create potential distribution maps through the use of environmental niche models (ENMs) by using the Genetic Algorithm for Rule-Set Production (GARP) using 22 climatic and topographic layers. Each map was used as a representation of the geographic distribution of the species and all available maps were summed to obtain general patterns of species richness in the region. Also, the maps were used to construct a presence-absence matrix in a grid of squares of 0.5 degrees of side, that was analyzed in a Parsimony Analysis of Endemicity (PAE), which resulted in a hypothesis of the biogeographic scheme in the region. We compiled a total of 41 527 records of 233 species of mammals associated to the MTEF. The maximum concentration of species richness (104-138 species) is located in the areas around the Isthmus of Tehuantepec, Northeastern Chiapas-Western Guatemala, Western Honduras, Central Nicaragua to Northwestern Costa Rica and Western Panama. The proposed regionalization indicates that mammalian faunas associated to these forests are composed of two main groups that are divided by the Isthmus of Tehuantepec in Oaxaca in: a) a Northern group that includes Sierra Madre of Chiapas-Guatemala and Yucatan Peninsula; and b) an austral group, that contains the Pacific slope of Chiapas towards the South including Central America. Some individual phylogenetic studies of mammal species in the region support the relationships between the areas of endemism proposed, which suggest a common biogeographical history. In spite that Mesoamerica is considered one of the most important hotspots for biological conservation, the poor knowledge of the biogeographic patterns, the scarcity of protected areas, and the high rate of habitat transformation due to human activities, make prioritary the development of conservation strategies that include patterns of species richness, endemism, and mammalian associations.

Regionalización biogeográfica de la mastofauna de los bosques tropicales perennifolios de Mesoamérica / Biogeographic regionalization of the mammals of tropical evergreen forests in Mesoamerica

Mesoamerica is a biologically complex zone that expands from Southern Mexico to extreme Northern Colombia. The biogeographical patterns and relationships of the mammalian fauna associated to the Mesoamerican Tropical Evergreen Forest (MTEF) are poorly understood, in spite of the wide distribution of this kind of habitat in the region. We compiled a complete georeferenced database of mammalian species distributed in the MTEF of specimens from museum collections and scientific literature. This database was used to create potential distribution maps through the use of environmental niche models (ENMs) by using the Genetic Algorithm for Rule-Set Production (GARP) using 22 climatic and topographic layers. Each map was used as a representation of the geographic distribution of the species and all available maps were summed to obtain general patterns of species richness in the region. Also, the maps were used to construct a presence-absence matrix in a grid of squares of 0.5 degrees of side, that was analyzed in a Parsimony Analysis of Endemicity (PAE), which resulted in a hypothesis of the biogeographic scheme in the region. We compiled a total of 41 527 records of 233 species of mammals associated to the MTEF. The maximum concentration of species richness (104-138 species) is located in the areas around the isthmus of Tehuantepec, Northeastern Chiapas-Western Guatemala, Western Honduras, Central Nicaragua to Northwestern Costa Rica and Western Panama. The proposed regionalization indicates that mammalian faunas associated to these forests are composed of two main groups that are divided by the isthmus of Tehuantepec in Oaxaca in: a) a Northern group that includes Sierra Madre of Chiapas-Guatemala and Yucatan Peninsula; and b) an austral group, that contains the Pacific slope of Chiapas towards the South including Central America. Some individual phylogenetic studies of mammal species in the region support the relationships between the areas of endemism proposed, which suggest a common biogeographical history. in spite that Mesoamerica is considered one of the most important hotspots for biological conservation, the poor knowledge of the biogeographic patterns, the scarcity of protected areas, and the high rate of habitat transformation due to human activities, make prioritary the development of conservation strategies that include patterns of species richness, endemism, and mammalian associations.

Este trabajo presenta una propuesta de regionalización biogeográfica de los bosques tropicales perennifolios de Mesoamérica, resultado de un análisis de parsimonia de endemismos (PAE), utilizando modelos de nicho ecológico (GARP) con mamíferos terrestres, usando 41 527 registros para las 233 especies de mamíferos reconocidas. La regionalización propuesta muestra que los bosques tropicales perennifolios de Mesoamérica se dividen por el istmo de Tehuantepec en Oaxaca en: a) un grupo septentrional que comprende la Sierra Madre de Chiapas-Guatemala y la Península de Yucatán, y b) un grupo austral, que contiene la vertiente pacífica hacia el sur incluyendo Centroamérica. Además se encontró congruencia con trabajos filogenéticos, lo que sugiere una historia biogeográfica común.