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1.
Leukemia ; 32(4): 900-910, 2018 04.
Article in English | MEDLINE | ID: mdl-29249821

ABSTRACT

The cytidine analogue, 5-azacytidine (AZA; 5-AZA-cR), is the primary treatment for myelodysplastic syndrome and chronic myelomonocytic leukaemia. However, only ~50% of treated patients will respond to AZA and the drivers of AZA resistance in vivo are poorly understood. To better understand the intracellular dynamics of AZA upon therapy and decipher the molecular basis for AZA resistance, we have developed a novel, multiparameter, quantitative mass spectrometry method (AZA-MS). Using AZA-MS, we have accurately quantified the abundance of the ribonucleoside (5-AZA-cR) and deoxyribonucleoside (5-AZA-CdR) forms of AZA in RNA, DNA and the cytoplasm within the same sample using nanogram quantities of input material. We report that although AZA induces DNA demethylation in a dose-dependent manner, it has no corresponding effect on RNA methylation. By applying AZA-MS to primary bone marrow samples from patients undergoing AZA therapy, we have identified that responders accumulate more 5-AZA-CdR in their DNA compared with nonresponders. AZA resistance was not a result of impaired AZA metabolism or intracellular accumulation. Furthermore, AZA-MS has helped to uncover different modes of AZA resistance. Whereas some nonresponders fail to incorporate sufficient 5-AZA-CdR into DNA, others incorporate 5-AZA-CdR and effect DNA demethylation like AZA responders, but show no clinical benefit.


Subject(s)
Azacitidine/pharmacology , Myelodysplastic Syndromes/drug therapy , Bone Marrow/drug effects , Cell Line, Tumor , Cytoplasm , DNA Methylation/drug effects , Drug Resistance, Neoplasm/drug effects , Humans , Mass Spectrometry/methods , RNA/genetics
2.
Sci Rep ; 6: 37454, 2016 11 22.
Article in English | MEDLINE | ID: mdl-27874045

ABSTRACT

Biofilms enhance rates of gene exchange, access to specific nutrients, and cell survivability. Haloarchaea in Deep Lake, Antarctica, are characterized by high rates of intergenera gene exchange, metabolic specialization that promotes niche adaptation, and are exposed to high levels of UV-irradiation in summer. Halorubrum lacusprofundi from Deep Lake has previously been reported to form biofilms. Here we defined growth conditions that promoted the formation of biofilms and used microscopy and enzymatic digestion of extracellular material to characterize biofilm structures. Extracellular DNA was found to be critical to biofilms, with cell surface proteins and quorum sensing also implicated in biofilm formation. Quantitative proteomics was used to define pathways and cellular processes involved in forming biofilms; these included enhanced purine synthesis and specific cell surface proteins involved in DNA metabolism; post-translational modification of cell surface proteins; specific pathways of carbon metabolism involving acetyl-CoA; and specific responses to oxidative stress. The study provides a new level of understanding about the molecular mechanisms involved in biofilm formation of this important member of the Deep Lake community.


Subject(s)
Biofilms , Halorubrum/metabolism , Halorubrum/physiology , Proteomics/methods , Antarctic Regions , Biofilms/growth & development , Deoxyribonuclease I/metabolism , Endopeptidase K/metabolism , Halorubrum/cytology , Halorubrum/ultrastructure , Metabolic Networks and Pathways , Microscopy, Fluorescence , Plankton/metabolism , Quorum Sensing
3.
Talanta ; 150: 671-80, 2016 Apr 01.
Article in English | MEDLINE | ID: mdl-26838458

ABSTRACT

Over recent years threats to racing have expanded to include naturally occurring biological molecules, such as peptides and proteins, and their synthetic analogues. Traditionally, antibodies have been used to enable detection of these compounds as they allow purification and concentration of the analyte of interest. The rapid expansion of peptide-based therapeutics necessitates a similarly rapid development of suitable antibodies or other means of enrichment. Potential alternative enrichment strategies include the use of aptamers, which offer the significant advantage of chemical synthesis once the nucleic acid sequence is known. A method was developed for the enrichment, detection and quantitation of gonadotropin-releasing hormone (GnRH) in equine urine using aptamer-based enrichment and LC-MS/MS. The method achieved comparable limits of detection (1 pg/mL) and quantification (2.5 pg/mL) to previously published antibody-based enrichment methods. The intra- and inter-assay precision achieved was less than 10% at both 5 and 20 pg/mL, and displayed a working dynamic range of 2.5-100 pg/mL. Significant matrix enhancement (170 ± 8%) and low analytical recovery (29 ± 15%) was observed, although the use of an isotopically heavy labelled GnRH peptide, GnRH (Pro(13)C5,(15)N), as the internal standard provides compensation for these parameters. Within the current limits of detection GnRH was detectable up to 1h post administration in urine and identification of a urinary catabolite extended this detection window to 4h. Based on the results of this preliminary investigation we propose the use of aptamers as a viable alternative to antibodies in the enrichment of peptide targets from equine urine.


Subject(s)
Aptamers, Nucleotide/chemistry , Chromatography, Liquid/methods , Doping in Sports/prevention & control , Gonadotropin-Releasing Hormone/analysis , Horses/urine , Peptide Fragments/chemistry , Tandem Mass Spectrometry/methods , Animals , Antibodies/chemistry , Gonadotropin-Releasing Hormone/chemistry , Gonadotropin-Releasing Hormone/isolation & purification
4.
Transl Psychiatry ; 4: e477, 2014 Nov 04.
Article in English | MEDLINE | ID: mdl-25369144

ABSTRACT

Delirium is a common cause and complication of hospitalization in older people, being associated with higher risk of future dementia and progression of existing dementia. However relatively little data are available on which biochemical pathways are dysregulated in the brain during delirium episodes, whether there are protein expression changes common among delirium subjects and whether there are any changes which correlate with the severity of delirium. We now present the first proteomic analysis of delirium cerebrospinal fluid (CSF), and one of few studies exploring protein expression changes in delirium. More than 270 proteins were identified in two delirium cohorts, 16 of which were dysregulated in at least 8 of 17 delirium subjects compared with a mild Alzheimer's disease neurological control group, and 31 proteins were significantly correlated with cognitive scores (mini-mental state exam and acute physiology and chronic health evaluation III). Bioinformatics analyses revealed expression changes in several protein family groups, including apolipoproteins, secretogranins/chromogranins, clotting/fibrinolysis factors, serine protease inhibitors and acute-phase response elements. These data not only provide confirmatory evidence that the inflammatory response is a component of delirium, but also reveal dysregulation of protein expression in a number of novel and unexpected clusters of proteins, in particular the granins. Another surprising outcome of this work is the level of similarity of CSF protein profiles in delirium patients, given the diversity of causes of this syndrome. These data provide additional elements for consideration in the pathophysiology of delirium as well as potential biomarker candidates for delirium diagnosis.


Subject(s)
Alzheimer Disease/cerebrospinal fluid , Cerebrospinal Fluid Proteins/analysis , Delirium/cerebrospinal fluid , Proteomics/methods , Aged , Aged, 80 and over , Biomarkers/cerebrospinal fluid , Female , Humans , Male
5.
Diabetologia ; 54(6): 1447-56, 2011 Jun.
Article in English | MEDLINE | ID: mdl-21347625

ABSTRACT

AIMS/HYPOTHESIS: We examined the time-dependent effects of deletion of the gene encoding protein kinase C epsilon (Prkce) on glucose homeostasis, insulin secretion and hepatic lipid metabolism in fat-fed mice. METHODS: Prkce(-/-) and wild-type (WT) mice were fed a high-fat diet for 1 to 16 weeks and subjected to i.p. glucose tolerance tests (ipGTT) and indirect calorimetry. We also investigated gene expression and protein levels by RT-PCR, quantitative protein profiling (isobaric tag for relative and absolute quantification; iTRAQ) and immunoblotting. Lipid levels, mitochondrial oxidative capacity and lipid metabolism were assessed in liver and primary hepatocytes. RESULTS: While fat-fed WT mice became glucose intolerant after 1 week, Prkce(-/-) mice exhibited normal glucose and insulin levels. iTRAQ suggested differences in lipid metabolism and oxidative phosphorylation between fat-fed WT and Prkce(-/-) animals. Liver triacylglycerols were increased in fat-fed Prkce(-/-) mice, resulting from altered lipid partitioning which promoted esterification of fatty acids in hepatocytes. In WT mice, fat feeding elevated oxygen consumption in vivo and in isolated liver mitochondria, but these increases were not seen in Prkce(-/-) mice. Prkce(-/-) hepatocytes also exhibited reduced production of reactive oxygen species (ROS) in the presence of palmitate. After 16 weeks of fat feeding, however, the improved glucose tolerance in fat-fed Prkce(-/-) mice was instead associated with increased insulin secretion during ipGTT, as we have previously reported. CONCLUSIONS/INTERPRETATION: Prkce deletion ameliorates diet-induced glucose intolerance via two temporally distinct phenotypes. Protection against insulin resistance is associated with changes in hepatic lipid partitioning, which may reduce the acute inhibitory effects of fatty acid catabolism, such as ROS generation. In the longer term, enhancement of glucose-stimulated insulin secretion prevails.


Subject(s)
Dietary Fats/metabolism , Glucose/metabolism , Homeostasis/physiology , Lipid Metabolism/physiology , Liver/metabolism , Protein Kinase C-epsilon/deficiency , Animals , Gene Deletion , Insulin/metabolism , Mice , Mice, Knockout , Models, Animal , Protein Kinase C-epsilon/genetics , Reactive Oxygen Species/metabolism , Time Factors
6.
Environ Microbiol ; 13(3): 576-88, 2011 Mar.
Article in English | MEDLINE | ID: mdl-20977570

ABSTRACT

Thielaviopsis basicola, a soil-borne pathogen with a broad host range and a cosmopolitan distribution, is emerging as a major risk to sustainable cotton production in Australia. Previous studies suggested that host specialization has occurred making T. basicola an ideal model for a comparative proteomic analysis of strains isolated from different hosts. Elucidation of the genomic diversity and investigation of the functional differences in the Australian population could provide valuable information towards disease control. In this study, isolates of T. basicola were investigated for genomic (internal transcribed spacers region), proteomic and cotton virulence level variations. Internal transcribed spacers sequence analysis revealed that isolates are grouped based on host of origin irrespective of geographical origin. At the proteome level a degree of diversity was apparent and hierarchical clustering analysis of the data also demonstrated a close correlation between the proteome and the host of origin. LC-MS/MS analysis and identification using cross-species similarity searching and de novo sequencing of host-specific differentially expressed proteins and the virulence-correlated proteome allowed successful identification of 43 spots. The majority were found to be involved in metabolism. Spots that were correlated with host and virulence differences included a hypothetical protein with a Rossman-fold NAD(P)(+)-binding protein domain, glyceraldehyde-3-phosphate dehydrogenase, arginase and tetrahydroxynaphthalene reductase.


Subject(s)
Ascomycota/metabolism , Fungal Proteins/analysis , Proteome/analysis , Ascomycota/genetics , Ascomycota/pathogenicity , Australia , Biological Evolution , Host-Pathogen Interactions , Mass Spectrometry , Proteome/chemistry , Proteome/metabolism , Proteomics , Virulence
7.
J Thromb Haemost ; 8(8): 1754-62, 2010 Aug.
Article in English | MEDLINE | ID: mdl-20979592

ABSTRACT

BACKGROUND: ß(2) -Glycoprotein I (ß(2) GPI) is an abundant plasma protein that is closely linked to blood clotting, as it interacts with various protein and cellular components of the coagulation system. However, the role of ß(2) GPI in thrombus formation is unknown. We have recently shown that ß(2) GPI is susceptible to reduction by the thiol oxidoreductases thioredoxin-1 and protein disulfide isomerase, and that reduction of ß(2) GPI can take place on the platelet surface. METHODS: ß(2) GPI, reduced by thioredoxin-1, was labeled with the selective sulfhydryl probe N(a)-(3-maleimidylpropionyl)biocytin and subjected to mass spectrometry to identify the specific cysteines involved in the thiol exchange reaction. Binding assays were used to examine the affinity of reduced ß(2) GPI for von Willebrand factor (VWF) and the effect of reduced ß2GPI on glycoprotein (GP)Ibα binding to VWF. Platelet adhesion to ristocetin-activated VWF was studied in the presence of reduced ß(2) GPI. RESULTS: We demonstrate that the Cys288-Cys326 disulfide in domain V of ß(2) GPI is the predominant disulfide reduced by thioredoxin-1. Reduced ß(2) GPI in vitro displays increased binding to VWF that is dependent on disulfide bond formation. ß(2) GPI reduced by thioredoxin-1, in comparison with non-reduced ß(2) GPI, leads to increased binding of GPIbα to VWF and increased platelet adhesion to activated VWF. CONCLUSIONS: Given the importance of thiol oxidoreductases in thrombus formation, we provide preliminary evidence that the thiol-dependent interaction of ß(2) GPI with VWF may contribute to the redox regulation of platelet adhesion.


Subject(s)
Gene Expression Regulation , Oxidation-Reduction , Thioredoxins/metabolism , beta 2-Glycoprotein I/metabolism , von Willebrand Factor/metabolism , Animals , Blood Coagulation , Cysteine/chemistry , Disulfides/chemistry , Humans , Mass Spectrometry/methods , Platelet Adhesiveness , Protein Binding , Protein Disulfide-Isomerases/chemistry , Protein Structure, Secondary , Protein Structure, Tertiary , Rats , Ristocetin/pharmacology , Sulfhydryl Compounds
8.
Environ Microbiol ; 11(10): 2660-75, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19601963

ABSTRACT

The adaptive response of the marine bacterium Sphingopyxis alaskensis RB2256 to solar radiation (both visible and ultraviolet) was assessed by a quantitative proteomic approach using iTRAQ (isobaric tags for relative and absolute quantification). Both growth phase (mid-log and stationary phase) and duration (80 min or 8 h) of different light treatments (combinations of visible light, UV-A and UV-B) were assessed relative to cultures maintained in the dark. Rates of total protein synthesis and viability were also assessed. Integrating knowledge from the physiological experiments with quantitative proteomics of the 12 conditions tested provided unique insight into the adaptation biology of UV and visible light responses of S. alaskensis. High confidence identifications were obtained for 811 proteins (27% of the genome), 119 of which displayed significant quantitative differences. Mid-log-phase cultures produced twice as many proteomic changes as stationary-phase cultures, while extending the duration of irradiation exposure of stationary-phase cultures did not increase the total number of quantitative changes. Proteins with significant quantitative differences were identified that were characteristic of growth phase and light treatment, and cellular processes, pathways and interaction networks were determined. Key factors of the solar radiation adaptive response included DNA-binding proteins implicated in reducing DNA damage, detoxification of toxic compounds such as glyoxal and reactive oxygen species, iron sequestration to minimize oxidative stress, chaperones to control protein re/folding, alterations to nitrogen metabolism, and specific changes to transcriptional and translational processes.


Subject(s)
Proteome/radiation effects , Sphingomonadaceae , Sunlight , Bacterial Proteins/chemistry , Bacterial Proteins/radiation effects , Gene Expression Regulation, Bacterial/radiation effects , Microbial Viability/radiation effects , Protein Biosynthesis/radiation effects , Proteomics , Seawater/microbiology , Sphingomonadaceae/physiology , Sphingomonadaceae/radiation effects , Tandem Mass Spectrometry , Ultraviolet Rays , Water Microbiology
9.
Am J Transplant ; 9(2): 424-7, 2009 Feb.
Article in English | MEDLINE | ID: mdl-19120084

ABSTRACT

De novo posttransplant thrombotic microangiopathy (TMA) is a complication of solid organ transplantation, which remains difficult to treat. In many cases, immunosuppressants and particularly calcineurin inhibitors, trigger TMA. Although withdrawing the offending drug may lead to resolution of TMA, graft and patient outcomes are poor. Specific treatments, including plasma exchange, have not gained widespread acceptance in those with fulminant disease and new approaches to the condition are urgently needed. We report a case of posttransplant de novo TMA presenting serially in association with ciclosporin, tacrolimus and sirolimus in a young recipient of a living donor kidney transplant. We describe a patient treated with belatacept, a novel CTLA4 Ig fusion protein, as ongoing maintenance immunosuppression to allow avoidance of conventional agents once associated with TMA. We report excellent early graft outcome, with no adverse events using this strategy. We suggest that belatacept may have a role in this traditionally difficult-to-treat group of patients.


Subject(s)
Immunoconjugates/therapeutic use , Immunosuppressive Agents/therapeutic use , Kidney Transplantation , Thrombosis/chemically induced , Thrombosis/drug therapy , Abatacept , Adult , Cyclosporine/adverse effects , Female , Humans , Immunosuppressive Agents/adverse effects , Postoperative Complications , Sirolimus/adverse effects , Tacrolimus/adverse effects , Thrombosis/diagnosis , Tumor Necrosis Factor-alpha/metabolism
10.
Kidney Int ; 73(2): 200-6, 2008 Jan.
Article in English | MEDLINE | ID: mdl-17914351

ABSTRACT

Residual kidney function is important for patient and technique survival in peritoneal dialysis (PD). Biocompatible dialysis solutions are thought to improve function and viability of peritoneal mesothelial cells and to preserve residual renal function (RRF). We conducted a randomized controlled study comparing use of biocompatible (B) with standard (S) solutions in 93 incident PD patients during a 1-year period. The demographics, comorbidities, and RRF of both groups were similar. At 3 and 12 months, 24-h urine samples were collected to measure volume and the mean of urea and creatinine clearance normalized to body surface area. Surrogate markers of fluid status, diuretic usage, C-reactive protein concentration, peritonitis episodes, survival data, and peritoneal equilibrium tests were also collected. Changes in the normalized mean urea and creatinine clearance were the same for both groups, with no significant differences in secondary end points. Despite non-randomized studies suggesting benefits of these newer biocompatible solutions, we could not detect any clinically significant advantages. Additional studies are needed to determine if advantages are seen with longer term use.


Subject(s)
Biocompatible Materials , Dialysis Solutions , Kidney/physiopathology , Peritoneal Dialysis , C-Reactive Protein/analysis , Female , Humans , Male , Middle Aged , Peritonitis/epidemiology , Peritonitis/prevention & control
11.
Kidney Int ; 71(7): 655-63, 2007 Apr.
Article in English | MEDLINE | ID: mdl-17290296

ABSTRACT

Cells exposed to high ambient glucose concentrations are subject to increases in intracellular calcium ([Ca(2+)](i)). We therefore considered it likely that the calcium-dependent cysteine protease calpain would play a role in the development of high glucose-induced cell injury. After 3 and 24 h, high glucose concentrations (25 mM D-glucose) produced almost identical increases in the degree of necrotic cell death in kidney proximal tubular epithelial cells (LLC-PK(1)) compared to cells treated with control glucose (5 mM D-glucose). Necrotic cell death could be restricted by inhibiting the activity of calpain. High glucose-treated LLC-PK(1) cells were found to have significantly elevated [Ca(2+)](i) concentrations within 1 h, and elevated calpain activity within 2 h compared to control treated cells. The DNA nick sensor poly(ADP-ribose) polymerase (PARP) has previously been shown to be an important driver of high glucose-induced cell death, but here we found that although PARP activity was increased after 24 h, it was unaltered after 3 h. Furthermore, PARP inhibition with PJ-34 did not restrict early high glucose-induced necrosis. Using a gene knockdown strategy with small interference RNA, we found that silencing calpain was effective in reducing the degree of early high glucose-induced necrosis. We conclude that high glucose concentrations evoke an early, calpain-mediated necrosis in cultured proximal tubular cells that is PARP-independent, and precedes the previously recognized activation of apoptosis.


Subject(s)
Apoptosis , Calpain/pharmacology , Epithelial Cells/pathology , Glucose/administration & dosage , Kidney Tubules, Proximal/pathology , LLC-PK1 Cells/pathology , Animals , Necrosis/chemically induced , Swine
12.
Anal Chem ; 78(20): 7216-21, 2006 Oct 15.
Article in English | MEDLINE | ID: mdl-17037924

ABSTRACT

Formalin is a routine fixative facilitating tissue preservation and histopathology. Proteomic techniques require freshly frozen specimens, which are often difficult to procure, and methods facilitating proteomic analysis of archival formalin-fixed brain tissue are lacking. We employed antigen-epitope-retrieval principles to facilitate proteomic analysis of brain tissue that had been fixed and stored in formalin for 3-7 years. Twenty-micrometer-thick cryopreserved OCT-embedded sections from inferior temporal cortex of human (7 years in formalin) or mouse brain specimens (3 years in formalin) were hematoxylin-/eosin-stained. Approximately 16-64-mm2 areas of the tissue sections were manually scraped off slides, or approximately 2 mm2 of human brain cortex was captured off membrane-coated slides using laser microdissection. Tissue was treated using various pH and temperature conditions prior to trypsin digestion and nano-LC-MS/MS. The largest number of proteins were retrieved by solubilization at pH 9 at 95 degrees C for 1 h; treatments at pH 4 or 6 at 25 or 65 degrees C were generally ineffective. Three-year formalin-fixed murine tissue did not yield more proteins compared to human tissue. Use of formalin-fixed tissue for proteomics is an invaluable tool for medical research. The combination of proteomics and microdissection enables selective enrichment and identification of novel, unique, or abundant proteins that may be important in pathogenesis.


Subject(s)
Antigens/immunology , Brain/immunology , Brain/metabolism , Epitopes/immunology , Formaldehyde , Proteomics/methods , Animals , Humans , Mice , Software , Solubility , Time Factors
13.
Kidney Int ; 70(1): 165-9, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16688117

ABSTRACT

Sarcoidosis is a chronic relapsing multi-systemic disorder characterized by the development of non-caseating granulomas. Granulomatous tubulo-interstitial nephritis is an uncommon manifestation of this condition. We identified 39 patients with sarcoidosis and renal disease from a single center of whom 17 patients had biopsy-proven tubulo-interstitial nephritis. They were analyzed with respect to demographic and clinical features, including response to corticosteroids and length of follow-up. They all presented with significant renal impairment. At presentation the mean+/-s.d. estimated glomerular filtration rate (eGFR) was 26.8+/-14 ml/min by modification of diet in renal disease (MDRD) equation 7. With treatment there was a significant improvement in renal function with eGFR 49.6+/-5.2 ml/min (P<0.01) at 1 year, and 47.9+/-6.8 ml/min (P<0.05) at the last review. The median follow-up was 84 months (range 6-284 months). Patients with chronic kidney disease (CKD) 3, the mean eGFR was 38.30+/-2.4 ml/min at presentation and 60.2+/-7.4 ml/min at 1 year (P=0.02) and in CKD 4 it improved from 19+/-2 to 38+/-6.6 ml/min at 1 year (P<0.05). After the 1st year, the change in eGFR was +0.8 ml/min/year for CKD 3 and -2 ml/min/year for CKD 4 (P<0.05). Three patients ceased their therapy either due to complications or poor compliance and experienced a worsening of renal function which was then reversed on re-commencing corticosteroids. Corticosteroids are effective in advanced tubulo-interstitial nephritis due to sarcoidosis. Long-term treatment is necessary to preserve renal function and to delay the onset of end-stage renal disease.


Subject(s)
Adrenal Cortex Hormones/therapeutic use , Nephritis, Interstitial/diagnosis , Nephritis, Interstitial/drug therapy , Sarcoidosis/diagnosis , Sarcoidosis/drug therapy , Adult , Female , Glomerular Filtration Rate , Humans , Male , Middle Aged , Nephritis, Interstitial/pathology , Prednisolone/therapeutic use , Sarcoidosis/pathology , Treatment Outcome
14.
Neurotox Res ; 7(1-2): 77-85, 2005.
Article in English | MEDLINE | ID: mdl-15639800

ABSTRACT

Multiple system atrophy (MSA) is characterized by the formation of oligodendroglial cytoplasmic inclusions (GCIs) consisting of alpha-synuclein filaments. AlphaB-crystallin, a small chaperone protein that binds to unfolded proteins and inhibits aggregation, has been documented in GCIs. We investigated the relative abundance and speciation of alphaB-crystallin in GCIs in MSA brains. We also examined the influence of alphaB-crystallin on the formation of cytoplasmic inclusions in cultured glial cells. Immunohistochemistry and confocal microscopy revealed alphaB-crystallin is a prominent component of GCIs, more abundant than in Lewy bodies in Lewy body dementia. One- and two-dimensional gel electrophoresis and mass spectrometric analysis of GCIs immunopurified from MSA brains indicated that alphaB-crystallin is a major protein component with multiple post-translationally modified species. In cultured C6 glioma cells treated with the proteasomal inhibitor, lactacystin, to induce accumulation of ubiquitinated proteins, a subset of cells showed increased cytoplasmic staining for alphaB-crystallin. Proteasome-inhibited cells transfected with GFP-tagged alpha-synuclein resulted in ubiquitin- and alphaB-crystallin-positive aggregates resembling GCIs in MSA brains. Our results indicate that alphaB-crystallin is a major chaperone in MSA, and suggest a role of the protein in the formation of inclusion bodies in glial cells.


Subject(s)
Inclusion Bodies/metabolism , Multiple System Atrophy/metabolism , Neuroglia/metabolism , alpha-Crystallin B Chain/biosynthesis , Amino Acid Sequence , Animals , Humans , Inclusion Bodies/genetics , Inclusion Bodies/pathology , Molecular Sequence Data , Multiple System Atrophy/pathology , Neuroglia/pathology , Rats , Tumor Cells, Cultured , alpha-Crystallin B Chain/genetics
16.
J Vasc Access ; 3(3): 101-7, 2002.
Article in English | MEDLINE | ID: mdl-17639470

ABSTRACT

BACKGROUND: The aim of this study was to determine whether the US National Kidney Foundation Disease Outcome Quality Initiative (K/DOQI) guidelines on haemodialysis access could be achieved and to examine its relevance to patients on dialysis in the UK. METHOD: A cross sectional study of chronic haemodialysis patients at our institution which involved case note review and measurements of biochemical parameters and dynamic venous pressure (dVP) was performed. Patients with polytetrafluoroethylene (PTFE) grafts were followed prospectively for 18 months. RESULTS: 262 patients were studied - 12%, 43%, 30% and 15% underwent dialysis through dialysis catheters, radial-cephalic fistulae (rAVF), brachial-cephalic fistulae (bAVF) and PTFE grafts respectively. RAVFs, bAVFs and PTFE grafts were the primary access (i.e. the first access created for the patient) in 58%, 35% and 7% respectively. Compared with patients of Caucasian origin, patients of Afro-Caribbean race were 3.80 times (95% confidence limit: 1.51 - 9.53) more likely to have a PTFE graft. Patients with higher 'dry weights' were more likely to have PTFE grafts (p<0.005 by ANOVA). Dialysis adequacy was similar irrespective of type and site of access. We found that 64% of PTFE grafts, 46% of bAVFs and 13% of rAVF had dVPs greater than 150 mmHg, (p<0.0001 by c2). This threshold recommended by DOQI predicted 12 of 13 dysfunctional grafts, but had a positive predictive value of only 50%. CONCLUSION: We have demonstrated that the K/DOQI guidelines are not only achievable, but that they can be exceeded by a considerable margin. Our data also suggest that the demographic details of patients within a unit will influence the achievable proportion of AVF: PTFE grafts (the proportion of PTFE grafts in Afro-Caribbeans being 3 times higher than in whites). Although a dVP >150 mmHg proved sensitive in predicting future graft dysfunction, it had low specificity.

17.
Am J Kidney Dis ; 38(6): E32, 2001 Dec.
Article in English | MEDLINE | ID: mdl-11728992

ABSTRACT

Wegener's granulomatosis (WG) can cause renal failure, requiring long-term renal replacement therapy. Renal transplantation in patients with WG is successful, but the risk for recurrence of the disease necessitates continued vigilance. We report a patient that originally presented with acute renal failure secondary to a pauci-immune focal necrotizing crescentic glomerulonephritis. Subsequent nasal involvement and serologic tests for antineutrophil cytoplasmic antibodies suggested a diagnosis of WG.


Subject(s)
Antibodies, Antineutrophil Cytoplasmic/blood , Granulomatosis with Polyangiitis/therapy , Kidney Transplantation , Biomarkers/blood , Humans , Immunosuppression Therapy , Male , Middle Aged , Prednisolone/administration & dosage , Secondary Prevention
18.
J Biol Chem ; 276(36): 33393-401, 2001 Sep 07.
Article in English | MEDLINE | ID: mdl-11445563

ABSTRACT

Hypochlorite is a major oxidant generated when neutrophils and macrophages are activated at inflammatory sites, such as in atherosclerotic lesions. Murine S100A8 (A8) is a major cytoplasmic protein in neutrophils and is secreted by macrophages in response to inflammatory stimuli. After incubation with reagent HOCl for 10 min, approximately 85% of A8 was converted to 4 oxidation products, with electrospay ionization mass spectrometry masses of m/z 10354, 10388, 10354 +/- 1, and 20707 +/- 3. All were resistant to reduction by dithiothreitol. Initial formation of a reactive Cys sulfenic acid intermediate was demonstrated by the rapid conjugation of 5,5-dimethyl-1,3-cyclohexanedione (dimedone) to HOCl-treated A8 to form stable adducts. Matrix-assisted laser desorption-reflectron time of flight peptide mass fingerprinting of isolated oxidation products confirmed the mass additions observed in the full-length proteins. Both Met(36/73) were converted to Met(36/73) sulfoxides. An additional product with an unusual mass addition of m/z 14 (+/-0.2) was identified and corresponded to the addition of oxygen to Cys(41), conjugation to various epsilon-amines of Lys(6), Lys(34/35), or Lys(87) with loss of dihydrogen and formation of stable intra- or inter-molecular sulfinamide cross-links. Specific fragmentations identified in matrix-assisted laser desorption-post source decay spectra and low energy collisional-induced dissociation tandem mass spectroscopy spectra of sulfinamide-containing digest peptides confirmed Lys(34/35) to Cys(41) sulfinamide bonds. HOCl oxidation of mutants lacking Cys(41) (Ala(41)S100A8) or specific Lys residues (e.g. Lys(34/35), Ala(34/35)S100A8) did not form sulfinamide cross-links. HOCl generated by myeloperoxidase and H(2)O(2) and by phorbol 12-myristate 13-acetate-activated neutrophils also formed these products(.) In contrast to the disulfide-linked dimer, oxidized monomer retained normal chemotactic activity for neutrophils. Sulfinamide bond formation represents a novel oxidative cross-linking process between thiols and amines and may be a general consequence of HOCl protein oxidation in inflammation not identified previously. Similar modifications in other proteins could potentially regulate normal and pathological processes during aging, atherogenesis, fibrosis, and neurogenerative diseases.


Subject(s)
Antigens, Differentiation/chemistry , Calcium-Binding Proteins/chemistry , Hypochlorous Acid/metabolism , Oxygen/metabolism , Sulfur/chemistry , Sulfur/metabolism , Amino Acid Sequence , Aspartic Acid/chemistry , Binding Sites , Calgranulin A , Chromatography, High Pressure Liquid , Cyclohexanones/pharmacology , Cysteine/chemistry , Dimerization , Disulfides , Dithiothreitol/pharmacology , Dose-Response Relationship, Drug , Hydrogen Peroxide/pharmacology , Lysine/chemistry , Models, Chemical , Molecular Sequence Data , Mutagenesis, Site-Directed , Mutation , Neutrophils/metabolism , Peptides/chemistry , Peroxidase/pharmacology , Spectrometry, Mass, Electrospray Ionization , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Sulfenic Acids/chemistry , Tetradecanoylphorbol Acetate/pharmacology , Time Factors
19.
J Leukoc Biol ; 69(6): 986-94, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11404386

ABSTRACT

S100 proteins represent a new class of chemoattractants. Here we extend earlier evidence for the proinflammatory properties of human S100A12. A12 induced migration of monocytoid cells, with optimal activity at 10(-10) M and potency of >10(-9) M C5a. Neutrophils were poorly responsive, and lymphocyte migration was not affected. Actin polymerization in monocytoid cells was accompanied by a sustained [Ca(2+)]i flux of a magnitude comparable with C5a. A12 elicited a transient infiltration of neutrophils (4-8 h) and more delayed recruitment of monocytes (8-24 h) in vivo. A12 (approximately 70 nM) was present in synovial fluid (SF) from rheumatoid arthritis patients, and synovium contained A12-positive neutrophils in the sublining and interstitial region, often surrounding the perivasculature but rarely in the synovial lining layer, although some macrophages were positive. The A12 gene was transiently up-regulated in monocytes by tumor necrosis factor alpha (6 h); induction by lipopolysaccharide (LPS) was sustained (12-48 h). A12 may contribute to leukocyte migration in chronic inflammatory responses.


Subject(s)
Calcium-Binding Proteins/physiology , Chemotaxis/drug effects , Inflammation/metabolism , Lymphocytes/drug effects , Monocytes/drug effects , Actins/metabolism , Animals , Antigens, Differentiation/metabolism , Arthritis, Rheumatoid/metabolism , Arthritis, Rheumatoid/pathology , Biopolymers/metabolism , Calcium Signaling/drug effects , Calcium-Binding Proteins/analysis , Calcium-Binding Proteins/genetics , Calcium-Binding Proteins/metabolism , Calcium-Binding Proteins/pharmacology , Calgranulin A , Calgranulin B , Cells, Cultured/drug effects , Gene Expression Regulation/drug effects , Gene Expression Regulation, Leukemic/drug effects , Humans , Leukemia, Monocytic, Acute/pathology , Lipopolysaccharides/pharmacology , Macrophages/chemistry , Macrophages/pathology , Mice , Mice, Inbred BALB C , Monocytes/metabolism , Neoplasm Proteins/biosynthesis , Neoplasm Proteins/genetics , Neutrophils/chemistry , Neutrophils/pathology , RNA, Messenger/biosynthesis , Rabbits , Recombinant Proteins/pharmacology , Reverse Transcriptase Polymerase Chain Reaction , S100 Proteins/metabolism , S100A12 Protein , Specific Pathogen-Free Organisms , Synovial Fluid/chemistry , Synovial Membrane/pathology , Tumor Necrosis Factor-alpha/pharmacology
20.
Ann Rheum Dis ; 60(4): 310-2, 2001 Apr.
Article in English | MEDLINE | ID: mdl-11247854

ABSTRACT

Diabetic muscle infarction is a rare condition which may present to a rheumatologist. It was first reported in 1965. Two illustrative cases are described here and the mechanisms of pathogenesis discussed. Analysis of the published data, results of the muscle biopsies, and a technetium-99m sestamibi scan suggest that the condition, which occurs against a background of diabetic microangiopathy, can be triggered by an ischaemic event and causes extensive muscle necrosis through hypoxia-reperfusion injury and compartment syndrome.


Subject(s)
Diabetes Mellitus, Type 2/complications , Infarction/etiology , Muscle, Skeletal/blood supply , Biopsy , Compartment Syndromes/complications , Diabetes Mellitus, Type 2/therapy , Diagnosis, Differential , Fatal Outcome , Female , Humans , Infarction/diagnosis , Infarction/therapy , Magnetic Resonance Imaging , Male , Middle Aged , Peritoneal Dialysis, Continuous Ambulatory/adverse effects , Reperfusion Injury/complications , Thigh , Tomography, X-Ray Computed
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