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1.
J Oral Maxillofac Pathol ; 27(2): 382-389, 2023.
Article in English | MEDLINE | ID: mdl-37854897

ABSTRACT

Immunotherapy is a promising approach in the management of human cancers and has been proven to provide a durable response in many cancers. It is helpful as an adjuvant therapy for cancers and at present is considered as a fourth pillar supporting surgery, chemotherapy and radiotherapy. In the treatment of oral cancer, immunotherapy is approved in late-stage diseases where surgical resection cannot be carried out or fails, leading to recurrences and metastasis. Evidences suggest that when given as a first-line treatment, it can elicit an immune response that shrinks tumours, which could provide long-term benefit for patients. But unlike the traditional approach which follows the uniform protocol for all oral cancer patients, effective immunotherapy requires a more site-specific personalized approach. The aim of this paper is to review the various immune evasive mechanisms adopted by tumour cells and their relevance as potential targets for immunotherapy in oral tongue squamous cell carcinoma.

2.
Oxf Open Mater Sci ; 1(1): itab003, 2021.
Article in English | MEDLINE | ID: mdl-38626262

ABSTRACT

Respiratory masks having similar standards of 'N95', defined by the US National Institute for Occupational Safety and Health, will be highly sought after, post the current COVID-19 pandemic. Here, such a low-cost (∼$1/mask) mask design having electrostatic rechargeability and filtration efficiency of >95% with a quality factor of ∼20 kPa-1 is demonstrated. This filtration efficacy is for particles of size 300 nm. The tri-layer mask, named PPDFGO tri, contains nylon, modified polypropylene (PPY), and cotton nonwoven fabrics as three layers. The melt-spun PPY, available in a conventional N95 mask, modified with graphene oxide and polyvinylidene fluoride mixture containing paste using a simple solution casting method acts as active filtration layer. The efficacy of this tri-layer system toward triboelectric rechargeability using small mechanical agitations is demonstrated here. These triboelectric nanogenerator (TENG)-assisted membranes have high electrostatic charge retention capacity (∼1 nC/cm2 after 5 days in ambient condition) and high rechargeability even in very humid conditions (>80% RH). A simple but robust permeability measurement set up is also constructed to test these TENG-based membranes, where a flow rate of 30-35 L/min is maintained during the testing. Such a simple modification to the existing mask designs enabling their rechargeability via external mechanical disturbances, with enhanced usability for single use as well as for reuse with decontantamination, will be highly beneficial in the realm of indispensable personal protective equipment.

3.
J Phys Chem B ; 124(8): 1444-1451, 2020 02 27.
Article in English | MEDLINE | ID: mdl-32017558

ABSTRACT

Solid-state NMR is a powerful tool to measure distances and motional order parameters which are vital tools in characterizing the structure and dynamics of molecules. Magic-angle spinning (MAS), widely employed in solid-state NMR, averages out dipole-dipole couplings that carry such information. Hence, rotor-synchronized radiofrequency (RF) pulses, that interfere with MAS averaging, are commonly employed to measure such couplings. However, most of the methods that achieve this, rotational echo double resonance (REDOR) being a classic example, require RF amplitudes that are greater than or equal to the MAS frequency. While feasible at MAS frequencies <40 kHz, these requirements become prohibitively large for higher MAS frequencies (40-110 kHz), which are now commercially available. Here, we redesign the REDOR experiment so that RF amplitudes as low as 0.5-0.7 times the spinning frequency can be used. This sequence, name deferred rotational echo double resonance (DEDOR), thus extends the utility of this method to the fastest MAS frequencies currently commercially available (111 kHz). The generality of this strategy is shown by extending it to other methods that utilize the same principle as REDOR. They will be useful in obtaining structural parameters for a wide range of molecules using solid-state NMR under fast MAS with the additional advantage of higher spectral resolution under these conditions.

4.
J Magn Reson ; 308: 106563, 2019 11.
Article in English | MEDLINE | ID: mdl-31353014

ABSTRACT

Rotational-echo double resonance (REDOR) and Dipolar-coupling chemical-shift correlation (DIPSHIFT) are commonly used experiments to probe heteronuclear dipole-dipole couplings between isolated pairs of spin-12 nuclei in magic-angle-spinning (MAS) solid-state NMR. Their widespread use is due to their robustness to experimental imperfections and a straightforward interpretation of data. Both of these experiments use rotor-synchronised π pulses to recouple the heteronuclear dipole-dipole couplings, and the observed intensity of resonances is modulated by a recoupled phase factor depending on the position or duration of the recoupling pulses. Several modifications to both of these experiments have been proposed, for example, the development of DIPSHIFT which employs strategies that mimic the multi-rotor-period nature of REDOR. We show here that REDOR and DIPSHIFT are in fact alternate implementations of the same experiment. The overt similarity in the design of REDOR and DIPSHIFT is also reflected in their theoretical description. Dipolar dephasing curves in REDOR are obtained by increasing the recoupling duration whilst keeping the position of the pulses constant, which results in a dephasing factor that is a function of only the dephasing time. DIPSHIFT, on the other hand, is a constant-time version of REDOR; the dipolar dephasing is a function of the position of the pulses with respect to the rotor period. We discuss the advantages and disadvantages of each implementation and suggest domains of applicability for these sequences.

5.
J Chem Phys ; 150(13): 134201, 2019 Apr 07.
Article in English | MEDLINE | ID: mdl-30954060

ABSTRACT

Rotational-Echo DOuble Resonance, REDOR, is an experimentally robust and a well-established dipolar-recoupling technique to measure dipolar couplings between isolated pairs of spin-1/2 heteronuclei in solid-state nuclear magnetic resonance. REDOR can also be used to estimate motional order parameters when the bond distance is known, for example, in the case of directly bound nuclei. However, the relatively fast dipolar dephasing for strongly coupled spin-1/2 pairs, such as 13C-1H, makes the stroboscopic measurement required in this experiment challenging, even at fast Magic-Angle-Spinning (MAS) frequencies. In such cases, modified REDOR-based methods like Shifted-REDOR (S-REDOR) are used to scale the dipolar coupling compared to REDOR. This is achieved by changing the position of one of the two recoupling π-pulses in a rotor period. This feature, however, comes at the cost of mixing multiple Fourier components of the dipolar coupling and can, additionally, require high radio-frequency amplitudes to realise small scaling factors. We introduce here a general pulse scheme which involves shifting both the π pulses in the REDOR scheme to achieve arbitrary scaling factors whilst retaining the robustness and simplicity of REDOR recoupling and avoiding the disadvantages of S-REDOR. The classical REDOR is a specific case of this scheme with a scaling factor of one. We demonstrate the results on isolated 13C-15N and 1H-13C spin pairs at 20 and 62.5 kHz MAS, respectively.

6.
J Chem Phys ; 146(24): 244201, 2017 Jun 28.
Article in English | MEDLINE | ID: mdl-28668030

ABSTRACT

Rotational-Echo DOuble-Resonance (REDOR) is a versatile experiment for measuring internuclear distance between two heteronuclear spins in solid-state NMR. At slow to intermediate magic-angle spinning (MAS) frequencies, the measurement of distances between strongly coupled spins is challenging due to rapid dephasing of magnetisation. This problem can be remedied by employing the pulse-shifted version of REDOR known as Shifted-REDOR (S-REDOR) that scales down the recoupled dipolar coupling. In this study, we propose a new variant of the REDOR sequence where the positions of the π pulses are determined by a sine-squared function. This new variant has scaling properties similar to S-REDOR. We use theory, numerical simulations, and experiments to compare the dipolar recoupling efficiencies and the experimental robustness of the three REDOR schemes. The proposed variant has advantages in terms of radiofrequency field requirements at fast MAS frequencies.

7.
Chem Biol Interact ; 225: 21-31, 2015 Jan 05.
Article in English | MEDLINE | ID: mdl-25446495

ABSTRACT

In the present study, a molecular docking analysis has been performed on diketone form of curcumin molecule with acetylcholinesterase (AChE). The calculated lowest docked energy of curcumin molecule in the active site of AChE is -11.21 kcal/mol; this high negative value indicates that the molecule exhibits large binding affinity towards AChE. When the curcumin molecule present in the active site of AChE, subsequently, its conformation has altered significantly and the molecule adopts a U-shape geometry as it is linear in gas phase (before entering into the active site). This conformational transition facilitates curcumin to form strong interaction with Phe330 of acyl-binding pocket and the choline binding site with indole ring of Trp84 and Asp72. The gas phase and the active site analysis of curcumin allows to understand the conformational geometry, nature of molecular flexibility, charge density redistribution and the variation of electrostatic properties of curcumin in the active site. To obtain the gas phase structure, the curcumin molecule was optimized using Hartree-Fock and density functional methods (B3LYP) with the basis set 6-311G(∗∗). A charge density analysis on both gas phase as well as the molecule lifted from the active site was carried out using Bader's theory of atoms in molecules (AIM). The difference in molecular electrostatic potential between the two forms of curcumin displays the difference in charge distribution. The large dipole moment of curcumin (7.54 D) in the active site reflects the charge redistribution as it is much less in the gas phase (4.34 D).


Subject(s)
Acetylcholinesterase/chemistry , Curcumin/chemistry , Acetylcholinesterase/metabolism , Binding Sites/physiology , Catalytic Domain/physiology , Curcumin/metabolism , Models, Molecular , Molecular Conformation , Molecular Docking Simulation , Thermodynamics
8.
J Trop Pediatr ; 57(4): 315-8, 2011 Aug.
Article in English | MEDLINE | ID: mdl-20889622

ABSTRACT

Disseminated intravascular coagulation (DIC) although a well known complication in neonatal sepsis is extremely rare in congenital syphilis and there are scanty reports of this entity in the literature. Intracranial bleeding following DIC in neonatal congenital syphilis is even rarer, and has been reported only once earlier. We are reporting the second case of neonatal DIC with intracranial haematoma due to congenital syphilis in a newborn. Our patient also had clinical and biochemical evidence of hepatitis which predisposes to DIC. Extensive investigations and emergent use of imaging modalities including ultrasound and CT scan led to early diagnosis and treatment in our patient, who could therefore be salvaged from an otherwise life threatening disease.


Subject(s)
Disseminated Intravascular Coagulation/microbiology , Hematoma, Subdural/microbiology , Syphilis, Congenital/complications , Anti-Bacterial Agents/therapeutic use , Disseminated Intravascular Coagulation/complications , Disseminated Intravascular Coagulation/diagnosis , Disseminated Intravascular Coagulation/therapy , Early Diagnosis , Hematoma, Subdural/diagnosis , Hematoma, Subdural/therapy , Hepatitis/complications , Hepatitis/microbiology , Humans , Infant, Newborn , Infant, Small for Gestational Age , Male , Plasma , Platelet Transfusion , Risk Factors , Syphilis, Congenital/diagnosis , Syphilis, Congenital/therapy , Treatment Outcome
9.
Indian J Biochem Biophys ; 47(6): 364-9, 2010 Dec.
Article in English | MEDLINE | ID: mdl-21355420

ABSTRACT

CREB binding protein (CBP) and E1A binding protein p300, also known as p300 are functionally related transcriptional co-activators (CoAs) and histone acetyltransferases (HATs). Some small molecules, which target HATs can activate or inhibit the p300 enzyme potently. Here, we report the binding affinities of two small molecules CTPB [N-(4-chloro-3-trifluoromethyl-phenyl)-2-ethoxy-6-pentadecyl-benzamide] and CTB [N-(4-chloro-3-trifluoromethyl-phenyl)-2-ethoxybenzamide] with p300 using docking method to obtain the insight of their interaction with p300. These small molecules bind to the enzyme, subsequently causing a structural change in the enzyme, which is responsible for the HAT activation. CTB exhibits higher binding affinity than CTPB, and their lowest docked energies are -7.72, -1.18 kcal/mol, respectively. In CTPB molecule, phenolic hydroxyl of Tyr1397 interacts with the non-polar atoms C(5E) and C(5F), and forms polar-non polar interactions. Similar interactions have also been observed in CTB. The residues Tyr1446 and Cys1438 interact with the non-pentadecyl atoms. Further, the docking study predicts a N-H--O hydrogen bonding interaction between CTB and Leu1398, in which the H--O contact distance is 2.06 A. The long pentadecyl chain of CTPB reduces the formation of hydrogen bond with the p300. The H-bond interaction could be the key factor for the better activation of CTB.


Subject(s)
Benzamides/metabolism , Benzamides/pharmacology , p300-CBP Transcription Factors/chemistry , p300-CBP Transcription Factors/metabolism , Binding Sites , Catalytic Domain , Enzyme Activation , Humans , In Vitro Techniques , Ligands , Models, Molecular
10.
Bioorg Med Chem ; 17(15): 5632-8, 2009 Aug 01.
Article in English | MEDLINE | ID: mdl-19574054

ABSTRACT

Substituted tetraoxanes with different substitution pattern on the aromatic ring were synthesized in order to explore the influence of different substituents in the antimalarial activity. Antimalarial activity of these compounds improves by the introduction of ethyl, iso-propyl or n-propyl groups in the aromatic ring but substitution with n-butyl or t-butyl leads decrease in antimalarial activity. Some of these compounds exhibit promising antimalarial activity. None of the compounds shows any toxicity against vero cells and three compounds (2a-2c) were tested against panel of six cell lines and none of these compounds showed any toxicity. X-ray crystal structure of compound 2w showed that tetraoxane ring is in the chair conformation with both the phenyl rings in the equatorial position. In addition, FeCl(3) mediated O-O bond scission of tetraoxanes (2a-2c) was also examined.


Subject(s)
Antimalarials/chemical synthesis , Antimalarials/pharmacology , Malaria, Falciparum/drug therapy , Plasmodium falciparum/drug effects , Tetraoxanes/chemical synthesis , Tetraoxanes/pharmacology , Animals , Antimalarials/chemistry , Antimalarials/toxicity , Cell Line , Cell Survival/drug effects , Chlorocebus aethiops , Crystallography, X-Ray , Microbial Sensitivity Tests , Models, Molecular , Structure-Activity Relationship , Tetraoxanes/chemistry , Tetraoxanes/toxicity , Vero Cells
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