miR-96-5p attenuates malathion-induced apoptosis of human kidney cells by targeting the ER stress marker DDIT3.

Micro RNAs (miRNAs) are major players in cellular responses to xenobiotic compounds and toxins. However, their functions in organophosphate-induced cytotoxicity remain unclear. This study investigated the involvement of miR-96-5p in the non-cholinergic toxicity of malathion in normal human kidney cells (HK-2 cells). Malathion decreased HK-2 cell viability and the expression of miR-96-5p in a dose- and time-dependent manner. In addition, transfection with miR-96-5p mimics attenuated malathion-induced HK-2 cell apoptosis, whereas transfection with a miR-96-5p inhibitor increased HK-2 cell apoptosis. Luciferase assays indicated that miR-96-5p could bind directly to the 3'-untranslated region of DDIT3, a well-known marker of endoplasmic reticulum stress. Further analyses of the expression of apoptosis-related genes and proteins indicated that miR-96-5p may function to reduce malathion-induced HK-2 cell apoptosis via regulation of the DDIT3/B-cell lymphoma (BCL)-2/caspase-3 signaling pathway. In summary, the results of the present study indicate that miR-96-5p protects HK-2 cells from malathion-induced ER stress-dependent apoptosis by targeting DDIT3.

Analysis of alternative splicing events by RNA sequencing in the ovaries of Xiang pig at estrous and diestrous.

Alternative splicing (AS) is an important mechanism for controlling gene expression, which regulates multiple biological processes in higher organisms. Chinese indigenous Xiang pig has distinctive biological characteristics, such as small size, early sexual maturity, lower litter size and not very clear exhibition of estrous behaviors. To further understand how AS responds to estrous cycles in Xiang pig, the genome-wide analysis of AS events was performed by RNA-seq method in Xiang pig ovaries at diestrous and estrous. Using ASprofile program, we analyzed twelve basic AS events in Xiang pig ovaries and identified 68,775 AS events in 15,142 genes from diestrous ovaries and 69,493 AS events in 15,291 genes from the estrous ovaries with average 4.54 splicing events. 94.4-95.5% of expressed genes underwent alternative splicing in this tissues. The frequencies of AS events were similar to each other at diestrous and estrous. Transcription start site (TSS) was the predominant type of AS events, followed by transcription terminal site (TTS), and skipped exon (SKIP). The remaining type of AS events, e.g., intron retention (IR) and alternative exon ends (AE), showed the lower frequencies. Further comparison analysis of gene expression indicated that 4,433 genes had at least one splice variant differentially expressed during estrous, whereas only 2,382 of them were differentially expressed at gene level. Numerous genes involved in gonad development and hormone metabolism were differentially regulated through AS. Twelve genes with different types of alternatively splicing were validated by using RT-PCR method. The GO annotation and KEGG pathway analysis clearly revealed that a lot of DEGs (differentially expressed genes) and DSGs (differentially spliced genes) were involved in follicular development and ovarian steroid biosynthesis. A large number of DSGs, although not differentially expressed, were enriched in circadian rhythm and several signaling pathways. These pathways potentially regulated the female animal reproductive function in gene and/or AS level. Our results suggested that alternative splicing play an essential role in regulation of gene expression in female pigs during estrous. Numerous genes involved in gonad development, hormone metabolism, circadian rhythm were differentially regulated through alternative splicing.

Copy number variations of MTHFSD gene across pig breeds and its association with litter size traits in Chinese indigenous Xiang pig.

Copy number variation (CNV) is a major proportion of genetic variation, which changes the gene structure and dosage and affects gene expression and function. To validate the presence and the function of CNV in pig, we used real-time quantitative polymerase chain reaction (qPCR) method to validate a 496 kb CNV region comprising MTHFSD gene on chromosome 6 of Xiang pig detected by single nucleotide polymorphism (SNP) array. Then we investigated the distribution of the MTHFSD CNV in a total of 545 pigs in four breeds. About 46.2% and 32.7% individuals in the four pig breeds were detected to be types of loss and gain of MTHFSD locus. The relative copy numbers of MTHFSD gene showed the largest variation range (0-55 copies) in the Xiang pig population. The copy numbers of MTHFSD gene presented the positive correlations with the transcript level of MTHFSD gene in adult ovaries. Statistical analysis indicated that CNVs of MTHFSD gene was significantly changed the litter size traits of Xiang pigs, and the individuals with CNV gain showed more litter size than the CNV loss pigs. We have reasons to believe that the MTHFSD as RNA-binding protein play an important role in pig reproduction as a result of regulating MTHFS mRNA metabolism.

Identification and profile of microRNAs in Xiang pig testes in four different ages detected by Solexa sequencing.

To further understand the role of microRNA (miRNA) during testicular development, we constructed four small RNA libraries from the testes of the Chinese indigenous Xiang pig at four different ages, which were sequenced using high-throughput Solexa deep sequencing methods. It yielded over 23 million high-quality reads and 1,342,579 unique sequences. At two and three months of age, the proportion which represented miRNAs was the most abundant class of small RNAs, but it was gradually replaced by the category that represented piRNAs in adult testes. We identified 543 known and homologous conserved porcine miRNAs and 49 potential novel miRNAs. There were 306 known miRNAs which were co-expressed in four libraries. Six miRNAs and three potential novel miRNAs were validated in testes and sperms of Xiang pig by RT-qPCR method. Many clusters of mature miRNA variants were observed, in which let-7 family was the most abundant one. After comparison among libraries, 204 miRNAs were identified as being differentially expressed and likely involved in the development and spermatogenesis of pig testes. This work presented a general genome-wide expression profile of the testes-expressed small RNAs in different ages of pig testes. Our results suggested that miRNAs performed a role in the regulation of mRNAs in puberty pig testes while piRNAs likely functioned mainly in sexually mature pig testes.

The spectral-structural relationship of a series of oxyluciferin derivatives.

The absorption and emission spectra of a series of oxyluciferin derivatives with different substituents, as well as 6'-amino oxyluciferins in different enol and keto forms, with or without an active-site model of luciferase, were systematically investigated using density functional theory. The effects of substituents, microenvironment, and the luciferase on the structures, absorption spectra, and fluorescent emission were all taken into account. It was found that a wide range of emission colors can be obtained from various oxyluciferin derivatives with the inclusion of active site residues modeling the luciferase active site. Enol and keto forms are responsible for the emissions observed in experiments. It was suggested that the active site of luciferase must be included in the calculation in order to determine the form of the emitters.

[Simultaneous determination of sugar alcohols and sugars in functional foods by precolumn ultraviolet derivatization--high performance liquid chromatography].

OBJECTIVE: To establish a method using precolumn ultraviolet derivatization coupled with high performance liquid chromatography (HPLC) for simultaneous determination of erythritol, xylitol, galactitol, sorbitol, mannitol, maltitol, glucose and sucrose in functional foods. METHODS: Target sugar alcohols and sugars in food samples were extracted in water by ultrasonic method and then reacted with benzoyl chloride to form violet-absorbing products, which were separated on a C18 column with gradient elution using methanol and water as mobile phase. The experiment was performed using a flow rate of 1.00 mL/min, column temperature at 30 degrees C and detected wavelength at 232 nm. RESULTS: The linear correlation coefficients of all the derivatives were more than 0. 999. The detection limits of the method were as low as 2. 2 microg/mL. The average recoveries were 89.6%-117.0%, with intraday relative standard derivations lower than 5%. CONCLUSION: This method is simple, inexpensive and easy to operate and it is suitable for the determination of sugar alcohols and glucose and sucrose in functional foods.

[Determination of sucralose in foods and beverages by ultraviolet derivatization-high performance liquid chromatography].

OBJECTIVE: To establish a method for determination of sucralose in foods and beverages using high performance liquid chromatography. METHODS: Sucralose was extracted with water and centrifuged, and then derivatized with benzoyl chloride in alkaline medium. The ultraviolet absorbing derivatives were separated on a Hydro-RP 80 angstroms C18 column (250 mm x 4.6 mm, 4 microm, Synergi) using methanol-water (95:5,V/V) as mobile phase with UV detection at 232 nm. RESULTS: A good correlation (correlation coefficient=0. 999 8) between detected and actual sucralose was achieved in the range of 0.05 to 1.00 microg. The detection limit of sucralose was 0.00125 microg. The recoveries were in the range from 97.4% to 102.0% with relative standard deviations of less than 5.0%. The intraday and interday relative standard deviations of the method were 1.52% and 4.04%, respectively. CONCLUSION: This method is simple, rapid, and accurate without the need of special detectors, and it can be used for rapid determination of sucralose in foods and beverages.

microRNA and mRNA expression profiling analysis of dichlorvos cytotoxicity in porcine kidney epithelial PK15 cells.

Dichlorvos (DIC) is an organophosphate compound with cholinergic and noncholinergic neurotoxicity as well as non-neuronal cytotoxicity. Little is known about the mechanisms of DIC cytotoxicity in non-neuronal cells. In this study, we established a porcine kidney epithelial cell line (PK15) as a model to explore the mechanisms underlying DIC cytotoxicity based on miRNA and mRNA expression profiling analysis. We found that DIC inhibited the proliferation of PK15 cells in a dose- and time-dependent manner, which may result from apoptosis induced by DIC. Microarray analyses revealed that 16 and 14 miRNAs were significantly upregulated and downregulated in PK15 cells treated by 0.875 mM DIC for 8 h. Among the 30 differentially expressed miRNAs, 7 new miRNAs in pigs were predicted by homology-based searches. In addition, DIC upregulated 339 and downregulated 282 mRNA transcripts. A target prediction algorithm was used to analyze the pattern of differentially expressed miRNAs and mRNAs. Functional analysis indicated that these mRNAs belonged to different functional categories, forming a network participating in the DIC-induced apoptosis in PK15 cells. Therefore, our findings provide new insights into the role of miRNAs in the gene expression and function in DIC-related noncholinergic cytotoxicity.

Theoretical study on photophysical properties of ambipolar spirobifluorene derivatives as efficient blue-light-emitting materials.

The aim of this work is to provide an in-depth interpretation of the optical and electronic properties of a series of spirobifluorene derivatives. These materials show great potential for application in organic light-emitting diodes as efficient blue-light-emitting materials due to the tuning of the optical and electronic properties by the use of different electron donors (D) and electron acceptors (A). The geometric and electronic structures of the molecules in the ground state are studied with density functional theory (DFT) and ab initio HF, whereas the lowest singlet excited states are optimized by ab initio CIS. The energies of the lowest singlet excited states are calculated by employing time-dependent density functional theory (TD-DFT). The results show that the HOMOs, LUMOs, energy gaps, ionization potentials, electron affinities, reorganization energies, and exciton binding energies for these complexes are affected by different D and A moieties. Also, it has obtained that these blue-light-emitting materials have improved charge transport rate and charge transfer balance performance and can be used as efficient ambipolar-transporting materials in organic light-emitting diodes.

Polymorphism in the first intron of follicle stimulating hormone beta gene in three Chinese pig breeds and two European pig breeds.

Follicle stimulating hormone (FSH) is a pituitary gonadotropin that plays a key role in the regulation of gonadal function in mammal. The gonadotropic hormones are composed of two subunits, the common alpha subunit and the hormone-specific beta subunit, which determine the binding to specific receptors and induction of biological response. The aim of this study was to investigate the polymorphism of the first intron of FSH-beta gene present in different pig breeds and its influence on the expression of FSH-beta gene. Genomic DNA was isolated from blood of three Chinese local pig breeds and two European pig breeds. The first intron of FSH-beta gene was amplified by polymerase chain reaction (PCR) and the PCR product was then determined by sequencing. The correlation between the expression level of FSH-beta gene and the sequence polymorphism was evaluated by RT-PCR using 29 heterozygous pig breeds. Three patterns of the PCR amplified fragments were observed in five different pig breeds. They are 500bp, 220bp, and 500/220bp in length representing three different genotypes with respect to the size of the first intron of FSH-beta gene. After sequencing the whole intron 1 of FSH-beta, we have found that the different size of the PCR amplified fragments was attributed to an insertion element, which was only found in the larger fragment. The insertion, specific in pig genome, showed high similarity to short interspersed nucleotide elements (SINE). Moreover, The Chinese pig breeds, Xiang, Nuogu and Kele pig, exhibited a statistically significant higher frequency of the allele with this SINE in FSH-beta gene than the European pig breeds did. To elucidate whether the SINE insertion affects the expression of FSH-beta gene, 29 heterozygous Chinese and European pig breeds were tested by RT-PCR. The results confirmed that the major transcript in the heterozygous pigs was from SINE- allele but not detected from SINE+ allele. These data suggested that the SINE insertion negatively regulated the expression of FSH-beta gene and the dominant character related to propagation was gained from the SINE- allele of FSH-beta locus in heterozygous breeds of pigs.

Theoretical study on structural, electronic, and optical properties of ambipolar diphenylamino end-capped oligofluorenylthiophenes and fluoroarene-thiophene as light-emitting materials.

Ambipolar diphenylamino end-capped oligofluorenylthiophenes and fluoroarene-thiophene show great potential for application in organic light-emitting diodes (OLEDs). Here, we provide an in-depth investigation on the optical and electronic properties of OF(2)TP-NPh ( 1a), OF(2)DTP-NPh ( 2a), OF(2)TTP-NPh ( 3a), OF(2)QTP-NPh ( 4a), and 2,5-bis-(2,3,5,6-tetrafluoro-4-trifluoromethyl-phenyl)-2,2':5',2'':5'',2'''-quaterthiophene ( 5a). The geometric and electronic structures of the oligomers in the ground-state are studied with density functional theory (DFT) and ab initio Hartree-Fock, whereas the lowest singlet excited states are optimized by ab initio CIS. The energies of the lowest singlet excited states are calculated by employing time-dependent density functional theory (TDDFT). The results show that the highest occupied molecular orbitals, lowest unoccupied molecular orbitals, energy gaps, ionization potentials, and electron affinities for the oligomers are affected by the thiophene chain length and the different end-caps. The absorption and emission spectra exhibit red shifts to some extent due to the increasing thiophene chain length and the enhancing electron-donating property of the end-caps. Furthermore, the large Stokes shifts ranging from 58 to 80 nm are examined, resulting from a more planar conformation of the excited-state between the two adjacent units in the oligomers. All the calculated data show that the fluoroarene-thiophene has improved electron transport rate and charge transfer balance performance, and all the studied molecules can be used as ambipolar-transporting materials in OLEDs.

Theoretical study on photophysical properties of multifunctional electroluminescent molecules with different pi-conjugated bridges.

The photophysics of a series of molecular organic light-emitting diodes (OLEDs) has been studied by theoretical calculation. These molecular OLEDs have been integrated by an electron- and hole-transporting components as well as an emitting components into the donor-pi-acceptor (D-pi-A) structures: 2-carbazolyl-7-dimesitylboryl-9,9-diethylfluorene (1), trans-4'-N-carbazolyl-4-dimesitylborylstilbene (2), and trans-2-[(4'-N-carbazolyl)styryl]-5-dimesitylborylthiophene (3). To reveal the relationship between the structures and properties of these multifunctional electroluminescent materials, the ground- and excited-state geometries were optimized at the B3LYP/6-31G(d), HF/6-31G(d), and CIS/6-31G(d) levels, respectively. The ionization potentials and electron affinities were computed. The mobilities of hole and electron in these compounds were studied computationally based on the Marcus electron transfer theory. The lowest excitation energies (E(g)) and the maximum absorption and emission wavelengths of these compounds were calculated by time-dependent density functional theory methods. The solvent effect on the emission spectra of these compounds was considered by a polarizable continuum model. As a result of these calculations, it was concluded that the electron injections of these compounds are much easier than Mes(2)B[p-4,4'-biphenyl-NPh(1-naphthyl)], and the diethylfluorene-based compound has higher electron mobility and better equilibrium properties as compared to the stilbene-based and styrylthiophene-based compounds.

The immunogenicity of fusion protein linking the carboxyl terminus of the B subunit of Shiga toxin 2 to the B subunit of E. coli heat-labile enterotoxin.

To augment the immunogenicity of the subunit B of Shiga toxin (Stx2e B) produced by Escherichia coli and protect piglets from edema disease in china, a fusion gene was constructed consisting of Stx2e B genetically linked at the N-terminus of the B subunit of heat-labile enterotoxin (LTB) in a translational fusion. After being induced with IPTG, the expressed fusion protein of Stx2e B-LTB was about 8.8% of total proteins, approximately 13 microg/ml of the bacteria culture. The Stx2e B-LTB fusion protein was found to be nontoxic to Vero cells at the dose higher than 1 microg/ml and to mice less than 100 microg/ml. Antibody titer against the fusion protein Stx2e B-LTB was 1:76,800, much higher than that of the recombinant Stx2e B protein (1:12,800) alone. All of the mice immunized with the Stx2e B-LTB fusion protein survived when challenged with a lethal dose (LD) of Stx2e toxin. The results showed that the poor immunogenicity of Stx2e B was overcome by conjugating the stx2e B to ltB. The immunogenicity of the constructed fusion protein Stx2e B-LTB in the present study was highly qualified to protect animals against Shiga toxin produced from Shiga toxin-producing Escherichia coli (STEC). The fusion protein of Stx2e B-LTB could be a candidate for a vaccine against edema disease and post-weaning diarrhea simultaneously in piglets.

Identification and function of the growth hormone gene in Rongjiang pig of China.

Growth of animal is largely regulated by growth hormone (GH). In this study, the GH gene was isolated and cloned from the genomic DNA library from Rongjiang pig, a Chinese local swine, using polymerase chain reaction technique. The complete nucleotide sequence of a 1.903 kb genomic fragment containing Rongjiang swine GH gene has been determined. The GH gene contained five exons and four introns similar to the GH genes of other mammalians and exhibited 97%~99% identity to the GH genes of the four western meat-type breeds and nine Chinese local pigs. Polymorphism of GH genes was analyzed by using the restriction enzymes Dde I, Nar I and BsmN I in four western meat-type breeds and ten Chinese local pigs. Five polymorphic restriction sites, with Dde I at the base 622 (G/A) in exon 2 and 274 (T/C) in 5o-flank, with Nar I at 631 (G/A) in exon 2, and with BsmN I at the base 841 (T/C) in intron 2 and 1358 (A/G) in exon 4, were identified. The polymorphic restriction site at 1358 (A/G) leaded to the GH mature protein of Rongjiang pig differing from that of four western meat-type breeds and eight Chinese local breeds at the residue Val108 substituted by Ile108. According to the crystal structure of human GH mature protein, this Ile108 substitution might result in a lower affinity of GH for its receptor in Rongjiang breed.

Stimulatory effects of gonadotropin-releasing hormone and dopamine on growth hormone release and growth hormone mRNA expression in Epinephelus coioides.

Gonadotropin-releasing hormone (GnRH) and dopamine (DA) can stimulate growth hormone (GH) release, but their effects on GH mRNA synthesis are controversial and deficient in fish. Orange-spotted grouper (Epinephelus coioides) is a hermaphroditic marine fish with sex reversal. Few data are available concerning the regulation of GH in grouper. In the present study, the effects of GnRH and DA on GH release and GH mRNA expression were determined using pituitary fragments of orange-spotted grouper under static culture conditions. After incubation from 1 h to 24 h, salmon GnRH (sGnRH, 100 nmol/L) stimulated the release of GH and increased the level of GH mRNA time-dependently. The minimum duration of sGnRH effect was 1 h. Both of sGnRH and mammalian GnRH (mGnRH) augmented the release of GH and the level of GH mRNA in a dose-dependent manner. The potency of sGnRH on both GH release and GH mRNA level was more pronounced than that of mGnRH. The effects of 1 micromol/L APO (Apomorphine), an agonist of D(1)/ D(2) dopamine receptors, significantly stimulated GH release and GH mRNA synthesis after incubation for 12 h. APO stimulated GH release and GH mRNA abundance in a dose-dependent manner. These results demonstrate that both GnRH and DA directly stimulate GH release and GH mRNA expression at the pituitary level, the actions of GnRH are more potent than that of DA in orange-spotted grouper.