Probabilistic volumetric speckle suppression in OCT using deep learning.

We present a deep learning framework for volumetric speckle reduction in optical coherence tomography (OCT) based on a conditional generative adversarial network (cGAN) that leverages the volumetric nature of OCT data. In order to utilize the volumetric nature of OCT data, our network takes partial OCT volumes as input, resulting in artifact-free despeckled volumes that exhibit excellent speckle reduction and resolution preservation in all three dimensions. Furthermore, we address the ongoing challenge of generating ground truth data for supervised speckle suppression deep learning frameworks by using volumetric non-local means despeckling-TNode to generate training data. We show that, while TNode processing is computationally demanding, it serves as a convenient, accessible gold-standard source for training data; our cGAN replicates efficient suppression of speckle while preserving tissue structures with dimensions approaching the system resolution of non-local means despeckling while being two orders of magnitude faster than TNode. We demonstrate fast, effective, and high-quality despeckling of the proposed network in different tissue types acquired with three different OCT systems compared to existing deep learning methods. The open-source nature of our work facilitates re-training and deployment in any OCT system with an all-software implementation, working around the challenge of generating high-quality, speckle-free training data.

Computational refocusing in phase-unstable polarization-sensitive optical coherence tomography.

We present computational refocusing in polarization-sensitive optical coherence tomography (PS-OCT) to improve spatial resolution in the calculated polarimetric parameters and extend the depth-of-field in phase-unstable, fiber-based PS-OCT systems. To achieve this, we successfully adapted short A-line range phase-stability adaptive optics (SHARP), a computational aberration correction technique compatible with phase-unstable systems, into a Stokes-based PS-OCT system with inter-A-line polarization modulation. Together with the spectral binning technique to mitigate system-induced chromatic polarization effects, we show that computational refocusing improves image quality in tissue polarimetry of swine eye anterior segment ex vivo with PS-OCT. The benefits, drawbacks, and potential applications of computational refocusing in anterior segment imaging are discussed.

Experimental generation of adjustable partially coherent optical vortices from coherent and incoherent light sources.

Adjustable spatial coherence systems allow the possibility to make different intensity distributions using one source. Most common adjustable sources are based on the Collet-Wolf system. However, it is also possible to adjust the spatial coherence of the illumination field from white light sources by spatially filtering the source mutual intensity spectrum. We implement the Collet-Wolf source and the LED-based system to experimentally contrast a variety of partially coherent optical vortices that can be generated with spatial light modulation. We experimentally study the effects of changing the transverse coherence in partially coherent optical vortices, using a proposed metric of vortex contrast depth that quantifies the change of the vortex hollowness. To expand the analysis, we use a Michelson interferometer to reconstruct the spiral wavefronts using phase shifting. We found that the LED system at lower spatially correlated light produces truncated triangular distributions (a 50 µm pinhole is used), and with higher correlated light, it produces partially coherent optical vortices (a 10 µm pinhole is used). The Collet-Wolf system generates partially coherent optical vortices up to 0.5 mm of focal shift in the diffuser. Our results provide an experimental understanding and instrumental methodology capable of steering the optical transverse coherence, producing adjustable partially coherent optical vortices that can be obtained using incoherent and coherent sources.

Computational adaptive optics in phase-unstable optical coherence tomography.

We present a scheme for correction of x-y-separable aberrations in optical coherence tomography (OCT) designed to work with phase unstable systems with no hardware modifications. Our approach, termed SHARP, is based on computational adaptive optics and numerical phase correction and follows from the fact that local phase stability is sufficient for the deconvolution of optical aberrations. We demonstrate its applicability in a raster-scan polygon-laser OCT system with strong phase-jitter noise, achieving successful refocusing at depths up to 4 times the Rayleigh range. We also present in vivo endoscopic and ex vivo anterior segment OCT data, showing significant enhancement of image quality, particularly when combining SHARP results with a resolution-preserving despeckling technique like TNode.

Volumetric non-local-means based speckle reduction for optical coherence tomography.

We present a novel tomographic non-local-means based despeckling technique, TNode, for optical coherence tomography. TNode is built upon a weighting similarity criterion derived for speckle in a three-dimensional similarity window. We present an implementation using a two-dimensional search window, enabling the despeckling of volumes in the presence of motion artifacts, and an implementation using a three-dimensional window with improved performance in motion-free volumes. We show that our technique provides effective speckle reduction, comparable with B-scan compounding or out-of-plane averaging, while preserving isotropic resolution, even to the level of speckle-sized structures. We demonstrate its superior despeckling performance in a phantom data set, and in an ophthalmic data set we show that small, speckle-sized retinal vessels are clearly preserved in intensity images en-face and in two orthogonal, cross-sectional views. TNode does not rely on dictionaries or segmentation and therefore can readily be applied to arbitrary optical coherence tomography volumes. We show that despeckled esophageal volumes exhibit improved image quality and detail, even in the presence of significant motion artifacts.

Vortex-enhanced coherent-illumination phase diversity for phase retrieval in coherent imaging systems.

We propose a phase-retrieval method based on the numerical optimization of a new objective function using coherent phase-diversity images as inputs for the characterization of aberrations in coherent imaging systems. By employing a spatial light modulator to generate multiple-order spiral phase masks as diversities, we obtain an increase in the accuracy of the retrieved phase compared with similar state-of-the-art phase-retrieval techniques that use the same number of input images. We present simulations that show a consistent advantage of our technique, and experimental validation where our implementation is used to characterize a highly aberrated 4F optical system.

Electronic speckle pattern interferometry using vortex beams.

We show that it is possible to perform electronic speckle pattern interferometry (ESPI) using, for the first time to our knowledge, vortex beams as the reference beam. The technique we propose is easy to implement, and the advantages obtained are, among others, environmental stability, lower processing time, and the possibility to switch between traditional ESPI and spiral ESPI. The experimental results clearly show the advantages of using the proposed technique for deformation studies of complex structures.