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1.
Pathogens ; 13(7)2024 Jun 27.
Article in English | MEDLINE | ID: mdl-39057768

ABSTRACT

BACKGROUND: Efforts on a global scale for combating malaria have achieved substantial progress over the past twenty years. Two Central American nations have accomplished their goal of eliminating malaria: El Salvador and Belize. Honduras has decreased the incidence of malaria and now reports fewer than 4000 malaria cases annually, aspiring to reach elimination by 2030. To accomplish this goal, it is essential to assess the existing strategies employed for malaria control and to address the task of incorporating novel intervention strategies to identify asymptomatic reservoirs. METHODS: A survey for detecting asymptomatic cases was carried out in the community of Kaukira, in Gracias a Dios, Honduras, focusing on malaria transmission during 2023. Asymptomatic community members were recruited as participants, malaria screening was performed through a rapid diagnostic test in situ, and a blood sample was collected on filter paper. Highly sensitive molecular assays based on photo-induced electron transfer PCR (PET-PCR) were performed to detect the two species of Plasmodium circulating in Honduras: Plasmodium vivax and Plasmodium falciparum. In addition, the identification of the parasite species was verified by amplifying three genetic markers (Pvmsp3α, Pvmsp3ß, and Pfmsp1). RESULTS: A total of 138 participants were recruited, mostly adult women. All individuals tested negative on the rapid diagnostic test. Positive results for malaria were detected by PET-PCR in 17 samples (12.3%). Most samples (12 out of 17) were amplified with a Ct value between 37 and 42, indicating very low parasitemias. Out of the 17 samples, 16 of them also showed amplification in the species assays. There were nine cases of P. falciparum infections and seven cases of P. vivax infections that were further confirmed by nested PCR (nPCR) of Pvmsp3 and Pfmsp1. Parasitemias ranged from 100 p/µL to less than 0.25 p/µL. One sample showed mixed infection. CONCLUSIONS: The existence of asymptomatic malaria reservoirs in Honduras can contribute to disease transmission and pose a challenge that may hinder elimination efforts, requiring public health authorities to modify surveillance strategies to identify the disease and treat this population accordingly.

2.
Nat Commun ; 14(1): 4812, 2023 08 09.
Article in English | MEDLINE | ID: mdl-37558654

ABSTRACT

Branched chain amino acid (BCAA) catabolic impairments have been implicated in several diseases. Branched chain ketoacid dehydrogenase (BCKDH) controls the rate limiting step in BCAA degradation, the activity of which is inhibited by BCKDH kinase (BDK)-mediated phosphorylation. Screening efforts to discover BDK inhibitors led to identification of thiophene PF-07208254, which improved cardiometabolic endpoints in mice. Structure-activity relationship studies led to identification of a thiazole series of BDK inhibitors; however, these inhibitors did not improve metabolism in mice upon chronic administration. While the thiophenes demonstrated sustained branched chain ketoacid (BCKA) lowering and reduced BDK protein levels, the thiazoles increased BCKAs and BDK protein levels. Thiazoles increased BDK proximity to BCKDH-E2, whereas thiophenes reduced BDK proximity to BCKDH-E2, which may promote BDK degradation. Thus, we describe two BDK inhibitor series that possess differing attributes regarding BDK degradation or stabilization and provide a mechanistic understanding of the desirable features of an effective BDK inhibitor.


Subject(s)
Amino Acids, Branched-Chain , Thiophenes , Mice , Animals , Amino Acids, Branched-Chain/metabolism , Phosphorylation , Thiophenes/pharmacology , Oxidoreductases/metabolism
3.
J Biol Chem ; 299(3): 102959, 2023 03.
Article in English | MEDLINE | ID: mdl-36717078

ABSTRACT

The mammalian mitochondrial branched-chain ketoacid dehydrogenase (BCKD) complex is a multienzyme complex involved in the catabolism of branched-chain amino acids. BCKD is regulated by the BCKD kinase, or BCKDK, which binds to the E2 subunit of BCKD, phosphorylates its E1 subunit, and inhibits enzymatic activity. Inhibition of the BCKD complex results in increased levels of branched-chain amino acids and branched-chain ketoacids, and this buildup has been associated with heart failure, type 2 diabetes mellitus, and nonalcoholic fatty liver disease. To find BCKDK inhibitors for potential treatment of these diseases, we performed both NMR and virtual fragment screening and identified tetrazole-bearing fragments that bind BCKDK at multiple sites. Through structure-based virtual screening expanding from these fragments, the angiotensin receptor blocker class antihypertension drugs and angiotensin receptor blocker-like compounds were discovered to be potent BCKDK inhibitors, suggesting potential new avenues for heart failure treatment combining BCKDK inhibition and antihypertension.


Subject(s)
3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide) , Angiotensin Receptor Antagonists , Humans , 3-Methyl-2-Oxobutanoate Dehydrogenase (Lipoamide)/metabolism , Amino Acids, Branched-Chain/metabolism , Angiotensin Receptor Antagonists/pharmacology , Multienzyme Complexes/metabolism , Heart Failure , Hypertension
4.
Insects ; 13(6)2022 Jun 15.
Article in English | MEDLINE | ID: mdl-35735885

ABSTRACT

Anopheles species are the vectors of malaria, one of the diseases with the greatest impact on the health of the inhabitants of the tropics. Due to their epidemiological relevance and biological complexity, monitoring of anopheline populations in current and former malaria-endemic areas is critical for malaria risk assessment. Recent efforts have described the anopheline species present in the main malaria foci in Honduras. This study updates and expands knowledge about Anopheles species composition, geographical distribution, and genetic diversity in the continental territory of Honduras as in the Bay Islands. Outdoor insect collections were carried out at 25 sites in eight municipalities in five departments of Honduras between 2018 and 2021. Specimens were identified using taxonomic keys. Partial COI gene sequences were used for molecular species identification and phylogenetic analyses. In addition, detection of Plasmodium DNA was carried out in 255 female mosquitoes. Overall, 288 Anopheles mosquitoes were collected from 8 municipalities. Eight species were morphologically identified. Anopheles albimanus was the most abundant and widely distributed species (79.5%). A subset of 175 partial COI gene sequences from 8 species was obtained. Taxonomic identifications were confirmed via sequence analysis. Anopheles albimanus and An. apicimacula showed the highest haplotype diversity and nucleotide variation, respectively. Phylogenetic clustering was found for An. argyritarsis and An. neomaculipalpus when compared with mosquitoes from other Neotropical countries. Plasmodium DNA was not detected in any of the mosquitoes tested. This report builds upon recent records of the distribution and diversity of Anopheles species in malaria-endemic and non-endemic areas of Honduras. New COI sequences are reported for three anopheline species. This is also the first report of COI sequences of An. albimanus collected on the island of Roatán with apparent gene flow relative to mainland populations.

5.
J Lipid Res ; 61(8): 1192-1202, 2020 08.
Article in English | MEDLINE | ID: mdl-32482718

ABSTRACT

Lysosomal acid lipase (LAL) is a serine hydrolase that hydrolyzes cholesteryl ester (CE) and TGs delivered to the lysosomes into free cholesterol and fatty acids. LAL deficiency due to mutations in the LAL gene (LIPA) results in accumulation of TGs and cholesterol esters in various tissues of the body leading to pathological conditions such as Wolman's disease and CE storage disease (CESD). Here, we present the first crystal structure of recombinant human LAL (HLAL) to 2.6 Å resolution in its closed form. The crystal structure was enabled by mutating three of the six potential glycosylation sites. The overall structure of HLAL closely resembles that of the evolutionarily related human gastric lipase (HGL). It consists of a core domain belonging to the classical α/ß hydrolase-fold family with a classical catalytic triad (Ser-153, His-353, Asp-324), an oxyanion hole, and a "cap" domain, which regulates substrate entry to the catalytic site. Most significant structural differences between HLAL and HGL exist at the lid region. Deletion of the short helix, 238NLCFLLC244, at the lid region implied a possible role in regulating the highly hydrophobic substrate binding site from self-oligomerization during interfacial activation. We also performed molecular dynamic simulations of dog gastric lipase (lid-open form) and HLAL to gain insights and speculated a possible role of the human mutant, H274Y, leading to CESD.


Subject(s)
Cholesterol Ester Storage Disease/enzymology , Sterol Esterase/chemistry , Sterol Esterase/metabolism , Cholesterol Ester Storage Disease/genetics , Crystallography, X-Ray , Glycosylation , Humans , Models, Molecular , Mutation , Protein Domains , Sterol Esterase/genetics
6.
Educ. med. (Ed. impr.) ; 21(2): 67-70, mar.-abr. 2020.
Article in Spanish | IBECS | ID: ibc-194472

ABSTRACT

INTRODUCCIÓN: La embriología es la ciencia que estudia el desarrollo morfológico desde la concepción hasta el nacimiento. Se decide realizar esta investigación para evaluar la retención de conocimientos de los estudiantes de medicina con relación a la memorización de placas histológicas en la catedra de embriología. METODOLOGÍA: Estudio descriptivo transversal cuantitativo-cualitativo de muestra no probabilística por conveniencia. Se aplica un examen a 94 estudiantes del 5.° año de la carrera de medicina, donde se evaluó el conocimiento con relación a 12 placas histológicas en el cual se pregunta: corte, estructura enfocada y estructura señalada, posteriormente respondieron una serie de preguntas cualitativas. RESULTADOS: El 100% de los estudiantes reprobaron el examen; el puntaje medio fue de 5,53 ± 6,84, con un puntaje máximo de 33 de 100. DISCUSIÓN: La enseñanza por microscopia es una técnica pedagógica muy común, pero muchas veces incide en su descontextualización científica y existe un déficit significativo al estudiar la población de manera retrospectiva, reflejándose en la cantidad de comentarios negativos, por lo que no se recomienda la evaluación memorística de placas histológicas por su baja retentiva a largo plazo


INTRODUCTION: Embryology is the science that studies morphological development from conception to birth. The aim of this study was to evaluate the retention of knowledge of medical students in relation to memorising histology slides in the embryology department. METHODOLOGY: Quantitative-qualitative cross-sectional descriptive study of non-probabilistic convenience sample. A total of 94 fifth year medical students sat an examination in which knowledge was evaluated in relation to 12 histology slides in which they asked about the, cut, focused structure, and indicated structure. They then answered a series of qualitative questions. RESULTS: All (100%) of the students failed the exam. The mean score was 5.53 ± 6.84, with a maximum score of 33 of 100. DISCUSSION: Teaching by microscopy is a very common pedagogical technique, but it often impinges on its scientific decontextualization, and there is significant deficit when studying the population retrospectively. This is reflected in the amount of negative comments. Thus, assessing memory retention using the evaluation of histology slides is not recommended due to its long-term retention


Subject(s)
Humans , Male , Female , Adult , Retention, Psychology , Knowledge , Embryology/education , Students, Medical/psychology , Teaching/psychology , Education, Medical/methods , Cross-Sectional Studies , Teaching/education , Bioethics
7.
J Med Chem ; 61(16): 7273-7288, 2018 08 23.
Article in English | MEDLINE | ID: mdl-30036059

ABSTRACT

Studies on indole-3-carboxylic acid derivatives as direct activators of human adenosine monophosphate-activated protein kinase (AMPK) α1ß1γ1 isoform have culminated in the identification of PF-06409577 (1), PF-06885249 (2), and PF-06679142 (3) as potential clinical candidates. Compounds 1-3 are primarily cleared in animals and humans via glucuronidation. Herein, we describe the biosynthetic preparation, purification, and structural characterization of the glucuronide conjugates of 1-3. Spectral characterization of the purified glucuronides M1, M2, and M3 indicated that they were acyl glucuronide derivatives. In vitro pharmacological evaluation revealed that all three acyl glucuronides retained selective activation of ß1-containing AMPK isoforms. Inhibition of de novo lipogenesis with representative parent carboxylic acids and their respective acyl glucuronide conjugates in human hepatocytes demonstrated their propensity to activate cellular AMPK. Cocrystallization of the AMPK α1ß1γ1 isoform with 1-3 and M1-M3 provided molecular insights into the structural basis for AMPK activation by the glucuronide conjugates.


Subject(s)
AMP-Activated Protein Kinases/metabolism , Indoles/chemistry , Indoles/metabolism , Lipogenesis/drug effects , AMP-Activated Protein Kinases/chemistry , Animals , Cells, Cultured , Crystallization/methods , Enzyme Activation/drug effects , Glucuronides/chemistry , Glucuronides/metabolism , Glucuronides/pharmacokinetics , Hepatocytes/drug effects , Hepatocytes/metabolism , Humans , Indoles/pharmacology , Macaca fascicularis , Magnetic Resonance Spectroscopy , Male , Microsomes, Liver/drug effects , Microsomes, Liver/metabolism , Rats, Wistar , Uridine Diphosphate Glucuronic Acid/pharmacology
8.
EBioMedicine ; 31: 122-132, 2018 May.
Article in English | MEDLINE | ID: mdl-29673898

ABSTRACT

Dysregulation of hepatic lipid and cholesterol metabolism is a significant contributor to cardiometabolic health, resulting in excessive liver lipid accumulation and ultimately non-alcoholic steatohepatitis (NASH). Therapeutic activators of the AMP-Activated Protein Kinase (AMPK) have been proposed as a treatment for metabolic diseases; we show that the AMPK ß1-biased activator PF-06409577 is capable of lowering hepatic and systemic lipid and cholesterol levels in both rodent and monkey preclinical models. PF-06409577 is able to inhibit de novo lipid and cholesterol synthesis pathways, and causes a reduction in hepatic lipids and mRNA expression of markers of hepatic fibrosis. These effects require AMPK activity in the hepatocytes. Treatment of hyperlipidemic rats or cynomolgus monkeys with PF-06409577 for 6weeks resulted in a reduction in circulating cholesterol. Together these data suggest that activation of AMPK ß1 complexes with PF-06409577 is capable of impacting multiple facets of liver disease and represents a promising strategy for the treatment of NAFLD and NASH in humans.


Subject(s)
AMP-Activated Protein Kinases/metabolism , Enzyme Activators/pharmacology , Hepatocytes/enzymology , Indoles/pharmacology , Liver/enzymology , Non-alcoholic Fatty Liver Disease , Animals , Cell Line , Haplorhini , Hepatocytes/pathology , Humans , Liver/pathology , Mice , Mice, Knockout , Non-alcoholic Fatty Liver Disease/drug therapy , Non-alcoholic Fatty Liver Disease/enzymology , Non-alcoholic Fatty Liver Disease/pathology , Rats
9.
Methods Mol Biol ; 1732: 29-55, 2018.
Article in English | MEDLINE | ID: mdl-29480467

ABSTRACT

Protein-ligand interactions can be evaluated by a number of different biophysical methods. Here we describe some of the experimental methods that we have used to generate AMPK protein reagents and characterize its interactions with direct synthetic activators. Recombinant heterotrimeric AMPK complexes were generated using standard molecular biology methods by expression either in insect cells via infection with three different viruses or more routinely in Escherichia coli with a tricistronic expression vector. Hydrogen/deuterium exchange (HDX) coupled with mass spectrometry was used to probe protein conformational changes and potential binding sites of activators on AMPK. X-ray crystallographic studies were carried out on crystals of AMPK with bound ligands to reveal detailed molecular interactions formed by AMPK activators at near-atomic resolution. In order to gain insights into the mechanism of enzyme activation and to probe the effects of AMPK activators on kinetic parameters such as Michaelis-Menten constant (K m ) or maximal reaction velocity (V max), we performed classical enzyme kinetic studies using radioactive 33P-ATP-based filter assay. Equilibrium dissociation constants (K D ) and on and off rates of ligand binding were obtained by application of surface plasmon resonance (SPR) technique.


Subject(s)
AMP-Activated Protein Kinases/chemistry , Deuterium Exchange Measurement/methods , Enzyme Activators/chemistry , Surface Plasmon Resonance/methods , AMP-Activated Protein Kinases/isolation & purification , Animals , Binding Sites , Crystallography, X-Ray , Deuterium Exchange Measurement/instrumentation , Enzyme Activation , Enzyme Assays/instrumentation , Enzyme Assays/methods , Kinetics , Ligands , Mass Spectrometry/instrumentation , Mass Spectrometry/methods , Molecular Docking Simulation , Protein Binding , Protein Structure, Quaternary , Recombinant Proteins/chemistry , Recombinant Proteins/isolation & purification , Sf9 Cells , Surface Plasmon Resonance/instrumentation
10.
J Med Chem ; 61(6): 2372-2383, 2018 03 22.
Article in English | MEDLINE | ID: mdl-29466005

ABSTRACT

Optimization of the pharmacokinetic (PK) properties of a series of activators of adenosine monophosphate-activated protein kinase (AMPK) is described. Derivatives of the previously described 5-aryl-indole-3-carboxylic acid clinical candidate (1) were examined with the goal of reducing glucuronidation rate and minimizing renal excretion. Compounds 10 (PF-06679142) and 14 (PF-06685249) exhibited robust activation of AMPK in rat kidneys as well as desirable oral absorption, low plasma clearance, and negligible renal clearance in preclinical species. A correlation of in vivo renal clearance in rats with in vitro uptake by human and rat renal organic anion transporters (human OAT/rat Oat) was identified. Variation of polar functional groups was critical to mitigate active renal clearance mediated by the Oat3 transporter. Modification of either the 6-chloroindole core to a 4,6-difluoroindole or the 5-phenyl substituent to a substituted 5-(3-pyridyl) group provided improved metabolic stability while minimizing propensity for active transport by OAT3.


Subject(s)
AMP-Activated Protein Kinases/drug effects , Enzyme Activators/chemical synthesis , Enzyme Activators/pharmacology , Indoles/chemical synthesis , Indoles/pharmacology , Animals , Enzyme Activation/drug effects , Enzyme Activators/pharmacokinetics , Humans , Indoles/pharmacokinetics , Intestinal Absorption , Kidney/drug effects , Kidney/enzymology , Male , Models, Molecular , Organic Anion Transporters, Sodium-Independent/metabolism , Rats , Rats, Wistar , Structure-Activity Relationship
11.
Cell Metab ; 25(5): 1147-1159.e10, 2017 May 02.
Article in English | MEDLINE | ID: mdl-28467931

ABSTRACT

The AMP-activated protein kinase (AMPK) is a potential therapeutic target for metabolic diseases based on its reported actions in the liver and skeletal muscle. We evaluated two distinct direct activators of AMPK: a non-selective activator of all AMPK complexes, PF-739, and an activator selective for AMPK ß1-containing complexes, PF-249. In cells and animals, both compounds were effective at activating AMPK in hepatocytes, but only PF-739 was capable of activating AMPK in skeletal muscle. In diabetic mice, PF-739, but not PF-249, caused a rapid lowering of plasma glucose levels that was diminished in the absence of skeletal muscle, but not liver, AMPK heterotrimers and was the result of an increase in systemic glucose disposal with no impact on hepatic glucose production. Studies of PF-739 in cynomolgus monkeys confirmed translation of the glucose lowering and established activation of AMPK in skeletal muscle as a potential therapeutic approach to treat diabetic patients.


Subject(s)
AMP-Activated Protein Kinases/metabolism , Aminopyridines/pharmacology , Enzyme Activators/pharmacology , Glucose/metabolism , Hypoglycemic Agents/pharmacology , Indoles/pharmacology , Aminopyridines/therapeutic use , Animals , Blood Glucose/metabolism , Diabetes Mellitus, Experimental/drug therapy , Diabetes Mellitus, Experimental/metabolism , Enzyme Activation/drug effects , Enzyme Activators/therapeutic use , Female , Hypoglycemic Agents/therapeutic use , Indoles/therapeutic use , Liver/drug effects , Liver/metabolism , Macaca fascicularis , Male , Mice, Inbred C57BL , Muscle, Skeletal/drug effects , Muscle, Skeletal/metabolism
12.
J Pharmacol Exp Ther ; 361(2): 303-311, 2017 05.
Article in English | MEDLINE | ID: mdl-28289077

ABSTRACT

Diabetic nephropathy remains an area of high unmet medical need, with current therapies that slow down, but do not prevent, the progression of disease. A reduced phosphorylation state of adenosine monophosphate-activated protein kinase (AMPK) has been correlated with diminished kidney function in both humans and animal models of renal disease. Here, we describe the identification of novel, potent, small molecule activators of AMPK that selectively activate AMPK heterotrimers containing the ß1 subunit. After confirming that human and rodent kidney predominately express AMPK ß1, we explore the effects of pharmacological activation of AMPK in the ZSF1 rat model of diabetic nephropathy. Chronic administration of these direct activators elevates the phosphorylation of AMPK in the kidney, without impacting blood glucose levels, and reduces the progression of proteinuria to a greater degree than the current standard of care, angiotensin-converting enzyme inhibitor ramipril. Further analyses of urine biomarkers and kidney tissue gene expression reveal AMPK activation leads to the modulation of multiple pathways implicated in kidney injury, including cellular hypertrophy, fibrosis, and oxidative stress. These results support the need for further investigation into the potential beneficial effects of AMPK activation in kidney disease.


Subject(s)
AMP-Activated Protein Kinases/metabolism , Aminopyridines/pharmacology , Diabetic Nephropathies/drug therapy , Enzyme Activators/pharmacology , Indoles/pharmacology , Kidney/drug effects , Aminopyridines/therapeutic use , Animals , Cell Size , Diabetic Nephropathies/metabolism , Diabetic Nephropathies/pathology , Enzyme Activation , Fibrosis , Humans , Indoles/therapeutic use , Isoenzymes/metabolism , Kidney/metabolism , Kidney/pathology , Kidney Function Tests , Macaca fascicularis , Mice, Inbred C57BL , Oxidative Stress , Phosphorylation , Proteinuria/drug therapy , Proteinuria/metabolism , Rats , Species Specificity
13.
J Med Chem ; 59(17): 8068-81, 2016 09 08.
Article in English | MEDLINE | ID: mdl-27490827

ABSTRACT

Adenosine monophosphate-activated protein kinase (AMPK) is a protein kinase involved in maintaining energy homeostasis within cells. On the basis of human genetic association data, AMPK activators were pursued for the treatment of diabetic nephropathy. Identification of an indazole amide high throughput screening (HTS) hit followed by truncation to its minimal pharmacophore provided an indazole acid lead compound. Optimization of the core and aryl appendage improved oral absorption and culminated in the identification of indole acid, PF-06409577 (7). Compound 7 was advanced to first-in-human trials for the treatment of diabetic nephropathy.


Subject(s)
AMP-Activated Protein Kinases/metabolism , Diabetic Nephropathies/drug therapy , Enzyme Activators/chemistry , Indoles/chemistry , Administration, Oral , Adsorption , Animals , Crystallography, X-Ray , Dogs , Enzyme Activators/chemical synthesis , Enzyme Activators/pharmacokinetics , Enzyme Activators/pharmacology , High-Throughput Screening Assays , Humans , Indazoles/chemical synthesis , Indazoles/chemistry , Indazoles/pharmacology , Indoles/chemical synthesis , Indoles/pharmacokinetics , Indoles/pharmacology , Injections, Intravenous , Macaca fascicularis , Male , Models, Molecular , Protein Conformation , Rats
14.
Bioorg Med Chem Lett ; 26(8): 1993-6, 2016 Apr 15.
Article in English | MEDLINE | ID: mdl-26965858

ABSTRACT

Loss of LIPA activity leads to diseases such as Wolman's Disease and Cholesterol Ester Storage Disease. While it is possible to measure defects in LIPA protein levels, it is difficult to directly measure LIPA activity in cells. In order to measure LIPA activity directly we developed a LIPA specific activity based probe. LIPA is heavily glycosylated although it is unclear how glycosylation affects LIPA activity or function. Our probe is specific for a glycosylated form of LIPA in cells, although it labels purified LIPA regardless of glycosylation.


Subject(s)
Molecular Probes/analysis , Molecular Probes/metabolism , Sterol Esterase/chemistry , Sterol Esterase/metabolism , Glycosylation , Humans , Molecular Docking Simulation , Molecular Probes/chemical synthesis , Molecular Probes/chemistry , Molecular Structure
15.
Biochem J ; 473(5): 581-92, 2016 Mar 01.
Article in English | MEDLINE | ID: mdl-26635351

ABSTRACT

AMP-activated protein kinase (AMPK) is a serine/threonine protein kinase that serves as a pleotropic regulator of whole body energy homoeostasis. AMPK exists as a heterotrimeric complex, composed of a catalytic subunit (α) and two regulatory subunits (ß and γ), each present as multiple isoforms. In the present study, we compared the enzyme kinetics and allosteric modulation of six recombinant AMPK isoforms, α1ß1γ1, α1ß2γ1, α1ß2γ3, α2ß1γ1, α2ß2γ1 and α2ß2γ3 using known activators, A769662 and AMP. The α1-containing complexes exhibited higher specific activities and lower Km values for a widely used peptide substrate (SAMS) compared with α2-complexes. Surface plasmon resonance (SPR)-based direct binding measurements revealed biphasic binding modes with two distinct equilibrium binding constants for AMP, ADP and ATP across all isoforms tested. The α2-complexes were ∼25-fold more sensitive than α1-complexes to dephosphorylation of a critical threonine on their activation loop (pThr(172/174)). However, α2-complexes were more readily activated by AMP than α1-complexes. Compared with ß1-containing heterotrimers, ß2-containing AMPK isoforms are less sensitive to activation by A769662, a synthetic activator. These data demonstrate that ligand induced activation of AMPK isoforms may vary significantly based on their AMPK subunit composition. Our studies provide insights for the design of isoform-selective AMPK activators for the treatment of metabolic diseases.


Subject(s)
AMP-Activated Protein Kinases/chemistry , Adenosine Monophosphate/chemistry , Allosteric Regulation , Biphenyl Compounds , Enzyme Activation , Enzyme Activators/chemistry , Enzyme Assays , Humans , Isoenzymes/chemistry , Kinetics , Protein Structure, Tertiary , Protein Subunits/chemistry , Pyrones/chemistry , Recombinant Proteins/chemistry , Thiophenes/chemistry
16.
Orthop J Sports Med ; 3(1): 2325967114566599, 2015 Jan.
Article in English | MEDLINE | ID: mdl-26535370

ABSTRACT

BACKGROUND: The anteromedial portal technique for drilling of the femoral tunnel during anterior cruciate ligament (ACL) reconstruction has been advocated by many surgeons as allowing improved access to the anatomical footprint. Furthermore, suspensory fixation of soft tissue grafts has become popularized because of complications associated with cross-pin fixation. Concerns regarding the use of both have recently arisen. PURPOSE: To raise awareness of the increased risk of graft failure when using the anteromedial portal technique with suspensory femoral fixation during ACL reconstruction. STUDY DESIGN: Cohort study; Level of evidence, 3. METHODS: From November 1998 to August 2012, a total of 465 primary ACL reconstructions were performed using quadrupled hamstring autograft tendons, with drilling of the femoral tunnel performed via the transtibial portal. Graft fixation on the femur was achieved with cross-pin fixation, while interference screw fixation was used on the tibia. From September 2012 to October 2013, there were 69 reconstructions performed through an anteromedial portal. While there was no change in graft choice, a change was made to using suspensory femoral fixation. No other surgical or postoperative rehabilitation changes were made. RESULTS: During the 14-year period in which ACL reconstructions were performed via the transtibial portal and with cross-pin fixation, 2 graft failures (0.4% failure rate) were reported. After switching to the anteromedial portal with suspensory fixation, 7 graft failures (10.1% failure rate) were reported over a 13-month period. These were 5 male and 2 female patients, with a mean age of 18.8 years-all elite athletes. The same surgical technique was used in all patients, and all patients had at least an 8 mm-diameter graft. Patients were cleared to return to sport at an average of 8.4 months postoperatively, after completing functional performance tests. Of the 7 patients, 6 sustained a rerupture of the graft within 2 weeks of returning to full competition. The final patient sustained a rerupture 10 months after being cleared to play. CONCLUSION: Compared with the transtibial technique with cross-pin graft fixation, there is an increased risk of graft failure when performing autologous hamstring ACL reconstructions using the anteromedial portal technique with cortical suspensory fixation.

17.
Protein Expr Purif ; 110: 22-9, 2015 Jun.
Article in English | MEDLINE | ID: mdl-25620107

ABSTRACT

Lysosomal acid lipase (LAL) is a serine hydrolase which hydrolyzes cholesteryl ester and triglycerides delivered to the lysosomes into free cholesterol and free fatty acids. Mutations in the LAL gene (LIPA) result in accumulation of triglycerides and cholesterol esters in various tissues of the body, leading to pathological conditions such as Wolman's disease (WD) and cholesteryl ester storage disease (CESD). CESD patients homozygous for His295Tyr (H295Y) mutation have less than 5% of normal LAL activity. To shed light on the molecular basis for this loss-of-function phenotype, we have generated the recombinant H295Y enzyme and studied its biophysical and biochemical properties. No significant differences were observed in the expression levels or glycosylation patterns between the mutant and the wild type LAL. However, the H295Y mutant displayed only residual enzymatic activity (<5%) compared to the wild type. While wild type LAL is mostly a monomer at pH 5.0, the vast majority H295Y exists as a high molecular soluble aggregate. Besides, the H295Y mutant has a 20°C lower melting temperature compared to the wild type. Transient expression studies in WD fibroblasts showed that mutation of His295 to other amino acids resulted in a significant loss of enzymatic activity. A homology model of LAL revealed that His295 is located on an α-helix of the cap domain and could be important for tethering it to its core domain. The observed loss-of-function phenotype in CESD patients might arise from a combination of protein destabilization and the shift to a non-functional soluble aggregate.


Subject(s)
Lysosomes/enzymology , Sterol Esterase/genetics , Wolman Disease/enzymology , Amino Acid Sequence , Animals , Baculoviridae/genetics , Baculoviridae/metabolism , Cholesterol Esters/chemistry , Cholesterol Esters/metabolism , Cloning, Molecular , Fibroblasts/metabolism , Fibroblasts/pathology , Gene Expression , Glycosylation , Humans , Kinetics , Lipid Metabolism , Lysosomes/pathology , Models, Molecular , Molecular Sequence Data , Mutation , Plasmids/chemistry , Plasmids/metabolism , Protein Aggregates , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/isolation & purification , Recombinant Fusion Proteins/metabolism , Sf9 Cells , Spodoptera , Sterol Esterase/isolation & purification , Sterol Esterase/metabolism , Wolman Disease/genetics , Wolman Disease/pathology
18.
Structure ; 22(8): 1161-1172, 2014 Aug 05.
Article in English | MEDLINE | ID: mdl-25066137

ABSTRACT

AMP-activated protein kinase (AMPK) is a principal metabolic regulator affecting growth and response to cellular stress. Comprised of catalytic and regulatory subunits, each present in multiple forms, AMPK is best described as a family of related enzymes. In recent years, AMPK has emerged as a desirable target for modulation of numerous diseases, yet clinical therapies remain elusive. Challenges result, in part, from an incomplete understanding of the structure and function of full-length heterotrimeric complexes. In this work, we provide the full-length structure of the widely expressed α1ß1γ1 isoform of mammalian AMPK, along with detailed kinetic and biophysical characterization. We characterize binding of the broadly studied synthetic activator A769662 and its analogs. Our studies follow on the heels of the recent disclosure of the α2ß1γ1 structure and provide insight into the distinct molecular mechanisms of AMPK regulation by AMP and A769662.


Subject(s)
AMP-Activated Protein Kinases/chemistry , AMP-Activated Protein Kinases/physiology , Enzyme Activation/physiology , Models, Molecular , AMP-Activated Protein Kinases/metabolism , Adenosine Monophosphate/metabolism , Allosteric Site/genetics , Biphenyl Compounds , Drug Delivery Systems , Humans , Kinetics , Ligands , Molecular Structure , Nuclear Magnetic Resonance, Biomolecular , Phosphorylation , Protein Conformation , Protein Isoforms/chemistry , Protein Isoforms/metabolism , Protein Isoforms/physiology , Pyrones/metabolism , Structure-Activity Relationship , Surface Plasmon Resonance , Thiophenes/metabolism
19.
Chem Biol ; 21(2): 284-94, 2014 Feb 20.
Article in English | MEDLINE | ID: mdl-24440079

ABSTRACT

Disrupting the binding interaction between proprotein convertase (PCSK9) and the epidermal growth factor-like domain A (EGF-A domain) in the low-density lipoprotein receptor (LDL-R) is a promising strategy to promote LDL-R recycling and thereby lower circulating cholesterol levels. In this study, truncated 26 amino acid EGF-A analogs were designed and synthesized, and their structures were analyzed in solution and in complex with PCSK9. The most potent peptide had an increased binding affinity for PCSK9 (KD = 0.6 µM) compared with wild-type EGF-A (KD = 1.2 µM), and the ability to increase LDL-R recycling in the presence of PCSK9 in a cell-based assay.


Subject(s)
Peptides/metabolism , Proprotein Convertases/metabolism , Receptors, LDL/metabolism , Serine Endopeptidases/metabolism , Amino Acid Sequence , Binding Sites , Cell Line , Cholesterol/metabolism , Epidermal Growth Factor/chemistry , Fluorescence Resonance Energy Transfer , Humans , Molecular Dynamics Simulation , Molecular Sequence Data , Mutagenesis , Peptides/chemical synthesis , Peptides/chemistry , Proprotein Convertase 9 , Proprotein Convertases/chemistry , Proprotein Convertases/genetics , Protein Binding , Protein Structure, Secondary , Protein Structure, Tertiary , Serine Endopeptidases/chemistry , Serine Endopeptidases/genetics
20.
J Biol Chem ; 286(48): 41510-41519, 2011 Dec 02.
Article in English | MEDLINE | ID: mdl-21953464

ABSTRACT

Inhibition of acetyl-CoA carboxylases (ACCs), a crucial enzyme for fatty acid metabolism, has been shown to promote fatty acid oxidation and reduce body fat in animal models. Therefore, ACCs are attractive targets for structure-based inhibitor design, particularly the carboxyltransferase (CT) domain, which is the primary site for inhibitor interaction. We have cloned, expressed, and purified the CT domain of human ACC2 using baculovirus-mediated insect cell expression system. However, attempts to crystallize the human ACC2 CT domain have not been successful in our hands. Hence, we have been using the available crystal structure of yeast CT domain to design human ACC inhibitors. Unfortunately, as the selectivity of the lead series has increased against the full-length human enzyme, the potency against the yeast enzyme has decreased significantly. This loss of potency against the yeast enzyme correlated with a complete lack of binding of the human-specific compounds to crystals of the yeast CT domain. Here, we address this problem by converting nine key active site residues of the yeast CT domain to the corresponding human residues. The resulting humanized yeast ACC-CT (yCT-H9) protein exhibits biochemical and biophysical properties closer to the human CT domain and binding to human specific compounds. We report high resolution crystal structures of yCT-H9 complexed with inhibitors that show a preference for the human CT domain. These structures offer insights that explain the species selectivity of ACC inhibitors and may guide future drug design programs.


Subject(s)
Acetyl-CoA Carboxylase/antagonists & inhibitors , Acetyl-CoA Carboxylase/chemistry , Catalytic Domain , Enzyme Inhibitors/chemistry , Saccharomyces cerevisiae Proteins/antagonists & inhibitors , Saccharomyces cerevisiae Proteins/chemistry , Acetyl-CoA Carboxylase/genetics , Animals , Cell Line , Crystallography, X-Ray , Drug Design , Humans , Saccharomyces cerevisiae , Saccharomyces cerevisiae Proteins/genetics , Species Specificity , Spodoptera , Structural Homology, Protein , Structure-Activity Relationship
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