Evolution of MHC class II E beta diversity within the genus Peromyscus.

Progress in understanding the evolution of variation at the MHC has been slowed by an inability to assess the relative roles of mutation vs. intragenic recombination in contributing to observed polymorphism. Recent theoretical advances now permit a quantitative treatment of the problem, with the result that the amount of recombination is at least an order of magnitude greater than that of mutation in the history of class II genes. We suggest that this insight allows progress in evaluating the importance of other factors affecting the evolution of the MHC. We investigated the evolution of MHC class II E beta sequence diversity in the genus Peromyscus. We find evidence for extensive recombination in the history of these sequences. Nevertheless, it appears that intragenic recombination alone is insufficient to account for evolution of MHC diversity in Peromyscus. Significant differences in silent variation among subgenera arose over a relatively short period of time, with little subsequent change. We argue that these observations are consistent with the effects of historical population bottleneck(s). Population restrictions may explain general features of MHC evolution, including the large amount of recombination in the history of MHC genes, because intragenic recombination may efficiently regenerate allelic polymorphism following a population constriction.

Relative roles of mutation and recombination in generating allelic polymorphism at an MHC class II locus in Peromyscus maniculatus.

The MHC class II loci encoding cell surface antigens exhibit extremely high allelic polymorphism. There is considerable uncertainty in the literature over the relative roles of recombination and de novo mutation in generating this diversity. We studied class II sequence diversity and allelic polymorphism in two populations of Peromyscus maniculatus, which are among the most widespread and abundant mammals of North America. We find that intragenic recombination (or gene conversion) has been the predominant mode for the generation of allelic polymorphism in this species, with the amount of population recombination per base pair exceeding mutation by at least an order of magnitude during the history of the sample. Despite this, patchwork motifs of sites with high linkage disequilibrium are observed. This does not appear to be consistent with the much larger amount of recombination versus mutation in the history of the sample, unless the recombination rate is highly non-uniform over the sequence or selection maintains certain sites in linkage disequilibrium. We conclude that selection is most likely to be responsible for preserving sequence motifs in the presence of abundant recombination.

The Imprint of History on Communities of North American and Asian Warblers.

The ecology of the component species of an adaptive radiation is likely to be influenced by the form of the founding ancestor to the radiation, its timing, and rates of speciation and extinction. These historical features complement environmental selection pressures. They imply that, if the history of the species' radiations are very different, ecological communities are unlikely to be completely convergent even when placed in identical environments. We compare the adaptive radiation of the Dendroica warblers of North America with that of the Phylloscopus warblers of Asia. We consider the ecology of the species in two localities where species' diversity is very high (New Hampshire, U.S.A., and Kashmir, India, respectively) and contrast the history of the two radiations on the basis of a molecular (mitochondrial cytochrome b) phylogeny. By comparison with the Phylloscopus, the Dendroica are on average larger and morphologically more similar to one another. Although there is some similarity between the Dendroica and Phylloscopus communities, they differ in foraging behavior and in associations of morphology with ecological variables. The Dendroica likely reflect an early Pliocene radiation and are two to four times younger than the Phylloscopus. They probably had a colorful sexually dichromatic ancestor, implicating sexual selection in the production of the many ecologically similar species. The Phylloscopus are much older and probably had a drab, monomorphic ancestor. Given the difference in ages of the two radiations, it is plausible that the close species' packing of the Dendroica warblers is a transient phenomenon. If this is the case, community structure evolves on the timescales of millions of years. Differences in ancestry and timing of the species' radiations can be related to the different biogeography of the two regions. This implies that the historical imprint on adaptive radiations could be predicted on the basis of the attributes of ancestors and biogeographical context.

EVOLUTION OF BREEDING DISTRIBUTIONS IN THE OLD WORLD LEAF WARBLERS (GENUS PHYLLOSCOPUS).

Among Palearctic warblers of the genus Phylloscopus those species that breed farther north occupy larger geographical ranges than those which breed farther south (Rapoport's rule). We suggest that much of this pattern is a consequence of the differential ability of species to occupy areas rendered inhospitable during the Pleistocene. In support of this suggestion, the midpoint of breeding range in a north-south direction has been an exceptionally labile trait through evolutionary time. Comparisons of ecological attributes of those species breeding in the Himalayas with close relatives in Siberia implies a role for habitat tracking in determining which species have been able to colonize northern areas; hypotheses based on climate and climatic variability have less support. In addition there is a likely role for geographic barriers and/or biotic interactions in preventing some taxa from spreading from small southern ranges.

ECOLOGICAL DIVERSIFICATION AND COMMUNITY STRUCTURE IN THE OLD WORLD LEAF WARBLERS (GENUS PHYLLOSCOPUS): A PHYLOGENETIC PERSPECTIVE.

I investigated the historical basis for variation in regional species diversity. I used a molecular phylogenetic analysis within a single genus of birds (the Old World leaf warblers, genus Phylloscopus) in conjunction with ecological studies in Europe, the Himalayas, and Japan to evaluate the importance of historical events in shaping the present constellation of morphology and behavior in the three different regions. The relatively depauperate assemblages have different histories. In Japan, there was invasion of several lineages, which have more closely related species elsewhere in Asia, whereas in Europe there was also limited in situ speciation. Much of the structure of peripheral communities is attributable to invasions from species-rich Asia, with little in situ morphological diversification. Within the Phylloscopus there are several phylogenetic clades with nonoverlapping size distributions. Major ecological and morphological shifts occurred early in the history of diversification within the group, and rarely since.