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1.
Leuk Lymphoma ; : 1-9, 2024 Apr 17.
Article in English | MEDLINE | ID: mdl-38629176

ABSTRACT

CD123 "expression" is common in hematological malignancies, including acute lymphoblastic leukemia (ALL). Flotetuzumab is a novel, investigational CD3/CD123 DART®. We conducted a phase 1 study evaluating safety and efficacy of flotetuzumab in relapsed/refractory ALL (Cohort A) and other advanced CD123-positive hematological malignancies (excluding myeloid malignancies) (cohort B). Thirteen patients (9 in Cohort A and 4 in Cohort B) were treated at dose level 1 (500 ng/kg/day) before early closure due to discontinuation of drug development by sponsor. Two dose limiting toxicities (Grade 4 thrombocytopenia and neutropenia) occurred in one patient in Cohort B. Cytokine release syndrome occurred in most patients (85%), all being grade ≤2. Responses only occurred in Cohort B, with a partial response in one patient with Hodgkin's lymphoma and morphological complete remission in the bone marrow in one patient with blastic plasmacytoid dendritic cell neoplasm. In conclusion, flotetuzumab had a manageable safety profile in advanced CD123-positive hematological malignancies.

2.
Open Forum Infect Dis ; 6(3): ofz060, 2019 Mar.
Article in English | MEDLINE | ID: mdl-30895202

ABSTRACT

BACKGROUND: Integrase strand transfer inhibitors (INSTIs) are highly efficacious and well tolerated antiretrovirals with fewer adverse side-effects relative to other classes of antiretrovirals. The use of INSTIs raltegravir, elvitegravir, and dolutegravir has increased dramatically over recent years. However, there is limited information about the evolution and prevalence of INSTI resistance mutations in clinical human immunodeficiency virus populations. METHODS: Human immunodeficiency virus-1-positive individuals ≥19 years were included if they received ≥1 dispensed prescription of antiretroviral therapy (ART) in British Columbia between 2009 and 2016 (N = 9358). Physician-ordered drug resistance tests were analyzed and protease inhibitor (PI), reverse-transcriptase inhibitor (RT), and INSTI resistance were defined as having ≥1 sample with a combined, cumulative score ≥30 by Stanford HIV Drug Resistance Algorithm version 7.0.1. RESULTS: Although most ART-treated individuals were tested for PI and RT resistance, INSTI resistance testing lagged behind the uptake of INSTIs among INSTI-treated individuals (11% in 2009; 34% in 2016). The prevalence of INSTI resistance was relatively low, but it increased from 1 to 7 per 1000 ART-treated individuals between 2009 and 2016 (P < .0001, R2 = 0.98). Integrase strand transfer inhibitor resistance mutations increased at integrase codons 66, 97, 140, 148, 155, and 263. CONCLUSIONS: The prevalence of INSTI resistance remains low compared with PI and RT resistance in ART-treated populations but is expanding with increased INSTI use.

3.
Retrovirology ; 15(1): 56, 2018 08 17.
Article in English | MEDLINE | ID: mdl-30119633

ABSTRACT

BACKGROUND: Integrase strand transfer inhibitors (INSTIs) are recommended for first-line HIV therapy based on their relatively high genetic barrier to resistance. Although raltegravir (RAL) and elvitegravir (EVG) resistance profiles are well-characterized, resistance patterns for dolutegravir (DTG), bictegravir (BIC), and cabotegravir (CAB) remain largely unknown. Here, in vitro drug selections compared the development of resistance to DTG, BIC, CAB, EVG and RAL using clinical isolates from treatment-naïve primary HIV infection (PHI) cohort participants (n = 12), and pNL4.3 recombinant strains encoding patient-derived Integrase with (n = 5) and without (n = 5) the E157Q substitution. RESULTS: Patient-derived viral isolates were serially passaged in PHA-stimulated cord blood mononuclear cells in the presence of escalating concentrations of INSTIs over the course of 36-46 weeks. Drug resistance arose more rapidly in primary clinical isolates with EVG (12/12), followed by CAB (8/12), DTG (8/12) and BIC (6/12). For pNL4.3 recombinant strains encoding patient-derived integrase, the comparative genetic barrier to resistance was RAL > EVG > CAB > DTG and BIC. The E157Q substitution in integrase delayed the advent of resistance to INSTIs. With EVG, T66I/A, E92G/V/Q, T97A or R263K (n = 16, 3, 2 and 1, respectively) arose by weeks 8-16, followed by 1-4 accessory mutations, conferring high-level resistance (> 100-fold) by week 36. With DTG and BIC, solitary R263K (n = 27), S153F/Y (n = 7) H51Y (n = 2), Q146 R (n = 3) or S147G (n = 1) mutations conferred low-level (< 3-fold) resistance at weeks 36-46. Similarly, most CAB selections (n = 18) resulted in R263K, S153Y, S147G, H51Y, or Q146L solitary mutations. However, three CAB selections resulted in Q148R/K followed by secondary mutations conferring high-level cross-resistance to all INSTIs. EVG-resistant viruses (T66I/R263K, T66I/E157Q/R263K, and S153A/R263K) retained residual susceptibility when switched to DTG, BIC or CAB, losing T66I by week 27. Two EVG-resistant variants developed resistance to DTG, BIC and CAB through the additional acquisition of E138A/Q148R and S230N, respectively. One EVG-resistant variant (T66I) acquired L74M/G140S/S147G, L74M/E138K/S147G and H51Y with DTG CAB and BIC, respectively. CONCLUSIONS: Second generation INSTIs show a higher genetic barrier to resistance than EVG and RAL. The potency of CAB was lower than BIC and DTG. The development of Q148R/K with CAB can result in high-level cross-resistance to all INSTIs.


Subject(s)
Anti-HIV Agents/pharmacology , Drug Resistance, Viral/drug effects , HIV Infections/virology , HIV Integrase Inhibitors/pharmacology , HIV Integrase/genetics , HIV-1/drug effects , Amides , Drug Resistance, Viral/genetics , HIV-1/enzymology , HIV-1/genetics , HIV-1/isolation & purification , Heterocyclic Compounds, 3-Ring , Heterocyclic Compounds, 4 or More Rings , Humans , Mutation , Oxazines , Piperazines , Pyridones , Quinolones , Virus Replication/drug effects
4.
J Infect Dis ; 218(11): 1773-1776, 2018 10 20.
Article in English | MEDLINE | ID: mdl-30010985

ABSTRACT

Bictegravir (BIC) and cabotegravir (CAB) are the latest available HIV integrase inhibitors in clinical trials. The combination of major integrase inhibitor substitutions G140S/Q148H has been shown to confer high-level resistance to the approved integrase inhibitors raltegravir (RAL) and elvitegravir (EVG) but not necessarily dolutegravir (DTG). We assayed recombinant viruses made from patient-derived RNA extracts for resistance phenotype for a panel of viruses containing G140S/Q148H with additional accessory substitutions. The accumulation of multiple integrase substitutions confers high-level resistance to all 5 integrase inhibitors. There is extensive cross-resistance between DTG, BIC, and CAB (r = 0.96-0.97).


Subject(s)
Drug Resistance, Viral , HIV Integrase Inhibitors/pharmacology , HIV-1 , Amides , Cell Line , Drug Resistance, Viral/drug effects , Drug Resistance, Viral/genetics , HIV Infections/virology , HIV-1/drug effects , HIV-1/genetics , Heterocyclic Compounds, 3-Ring/pharmacology , Heterocyclic Compounds, 4 or More Rings/pharmacology , Humans , Oxazines , Piperazines , Pyridones/pharmacology
5.
J Clin Invest ; 127(12): 4437-4448, 2017 12 01.
Article in English | MEDLINE | ID: mdl-29106386

ABSTRACT

Ebolaviruses and marburgviruses belong to the family Filoviridae and cause high lethality in infected patients. There are currently no licensed filovirus vaccines or antiviral therapies. The development of broad-spectrum therapies against members of the Marburgvirus genus, including Marburg virus (MARV) and Ravn virus (RAVV), is difficult because of substantial sequence variability. RNAi therapeutics offer a potential solution, as identification of conserved target nucleotide sequences may confer activity across marburgvirus variants. Here, we assessed the therapeutic efficacy of lipid nanoparticle (LNP) delivery of a single nucleoprotein-targeting (NP-targeting) siRNA in nonhuman primates at advanced stages of MARV or RAVV disease to mimic cases in which patients begin treatment for fulminant disease. Sixteen rhesus monkeys were lethally infected with MARV or RAVV and treated with NP siRNA-LNP, with MARV-infected animals beginning treatment four or five days after infection and RAVV-infected animals starting treatment three or six days after infection. While all untreated animals succumbed to disease, NP siRNA-LNP treatment conferred 100% survival of RAVV-infected macaques, even when treatment began just 1 day prior to the death of the control animals. In MARV-infected animals, day-4 treatment initiation resulted in 100% survival, and day-5 treatment resulted in 50% survival. These results identify a single siRNA therapeutic that provides broad-spectrum protection against both MARV and RAVV.


Subject(s)
Drug Delivery Systems/methods , Marburg Virus Disease/drug therapy , Marburgvirus , Nanoparticles/therapeutic use , RNA, Small Interfering/pharmacology , Animals , Macaca mulatta , Marburg Virus Disease/metabolism , Marburg Virus Disease/pathology , Nanoparticles/chemistry , RNA, Small Interfering/chemistry
6.
AIDS ; 31(10): 1425-1434, 2017 06 19.
Article in English | MEDLINE | ID: mdl-28375875

ABSTRACT

OBJECTIVES: To estimate the incidence of and risk factors for emergent resistance to integrase strand transfer inhibitor (INSTI) and nucleoside(-tide) reverse transcriptase inhibitors (NRTI) in HIV-1-infected adults receiving an INSTI and two NRTIs. DESIGN: Retrospective cohort study. METHODS: Persons aged at least 19 years were included if they received their first prescription for raltegravir, elvitegravir or dolutegravir in British Columbia, Canada in 2012-2014 and were followed to 31 December 2015. Emergent resistance was defined as new mutations conferring intermediate-high level NRTI or INSTI resistance (score ≥30, Stanford HIV Drug Resistance Algorithm v.7.0.1). First-year resistance rates and 95% confidence intervals (95% CI) were estimated for 'any' (INSTI or NRTI) resistance using Poisson regression. The relationship between any emergent resistance and explanatory variables was modeled by Cox proportional hazards. RESULTS: There were 270 raltegravir, 323 elvitegravir and 392 dolutegravir-treated persons who were predominantly male (77%), antiretroviral therapy (ART)-experienced (81%), with low prevalence of preexisting drug resistance (16%). INSTI and NRTI resistance emerged in both ART-experienced and ART-naive persons (including dolutegravir-treated ART-naive), with no statistically significant differences in 'any' resistance rates (95% CI) between INSTIs: raltegravir 3.80 (1.90, 7.60), elvitegravir 2.37 (1.06, 5.27) and dolutegravir 1.48 (0.62, 3.55)/100 person-years. The strongest factors associated with emergent resistance were CD4 less than 200 cells/µl, adjusted hazard ratio (95% CI) 10.46 (4.67, 23.41) and less than 80% adherence to the INSTI regimen hazard ratio 2.52 (1.11, 5.71). CONCLUSION: Incident drug resistance rates were low with 'real-world' use of INSTI-based regimens. However, incomplete ART adherence and low CD4 cell count were associated with increased resistance rates regardless of which INSTI was prescribed. Provide adherence support and monitor for drug resistance.


Subject(s)
Drug Resistance, Viral , HIV Infections/drug therapy , HIV Infections/virology , HIV Integrase Inhibitors/pharmacology , HIV Integrase Inhibitors/therapeutic use , Adult , British Columbia/epidemiology , Female , Humans , Incidence , Male , Middle Aged , Mutation, Missense , Retrospective Studies
7.
Nat Microbiol ; 1(10): 16142, 2016 08 22.
Article in English | MEDLINE | ID: mdl-27670117

ABSTRACT

Although significant progress has been made in developing therapeutics against Zaire ebolavirus, these therapies do not protect against other Ebola species such as Sudan ebolavirus (SUDV). Here, we describe an RNA interference therapeutic comprising siRNA targeting the SUDV VP35 gene encapsulated in lipid nanoparticle (LNP) technology with increased potency beyond formulations used in TKM-Ebola clinical trials. Twenty-five rhesus monkeys were challenged with a lethal dose of SUDV. Twenty animals received siRNA-LNP beginning at 1, 2, 3, 4 or 5 days post-challenge. VP35-targeting siRNA-LNP treatment resulted in up to 100% survival, even when initiated when fever, viraemia and disease signs were evident. Treatment effectively controlled viral replication, mediating up to 4 log10 reductions after dosing. Mirroring clinical findings, a correlation between high viral loads and fatal outcome was observed, emphasizing the importance of stratifying efficacy according to viral load. In summary, strong survival benefit and rapid control of SUDV replication by VP35-targeting LNP confirm its therapeutic potential in combatting this lethal disease.


Subject(s)
Hemorrhagic Fever, Ebola/therapy , Lipids , RNA Interference , RNA, Small Interfering/therapeutic use , Animals , Antibodies, Viral , Disease Models, Animal , Drug Compounding , Ebolavirus/isolation & purification , Ebolavirus/pathogenicity , Hemorrhagic Fever, Ebola/virology , Hep G2 Cells , Humans , Macaca mulatta , Nanoparticles/administration & dosage , Nanoparticles/chemistry , RNA, Small Interfering/genetics , Sudan , Viral Load/drug effects , Viral Regulatory and Accessory Proteins/genetics , Viral Regulatory and Accessory Proteins/metabolism , Viremia/therapy , Virus Replication
8.
Sci Transl Med ; 6(250): 250ra116, 2014 Aug 20.
Article in English | MEDLINE | ID: mdl-25143366

ABSTRACT

Marburg virus (MARV) and the closely related filovirus Ebola virus cause severe and often fatal hemorrhagic fever (HF) in humans and nonhuman primates with mortality rates up to 90%. There are no vaccines or drugs approved for human use, and no postexposure treatment has completely protected nonhuman primates against MARV-Angola, the strain associated with the highest rate of mortality in naturally occurring human outbreaks. Studies performed with other MARV strains assessed candidate treatments at times shortly after virus exposure, before signs of disease are detectable. We assessed the efficacy of lipid nanoparticle (LNP) delivery of anti-MARV nucleoprotein (NP)-targeting small interfering RNA (siRNA) at several time points after virus exposure, including after the onset of detectable disease in a uniformly lethal nonhuman primate model of MARV-Angola HF. Twenty-one rhesus monkeys were challenged with a lethal dose of MARV-Angola. Sixteen of these animals were treated with LNP containing anti-MARV NP siRNA beginning at 30 to 45 min, 1 day, 2 days, or 3 days after virus challenge. All 16 macaques that received LNP-encapsulated anti-MARV NP siRNA survived infection, whereas the untreated or mock-treated control subjects succumbed to disease between days 7 and 9 after infection. These results represent the successful demonstration of therapeutic anti-MARV-Angola efficacy in nonhuman primates and highlight the substantial impact of an LNP-delivered siRNA therapeutic as a countermeasure against this highly lethal human disease.


Subject(s)
Lipids/therapeutic use , Macaca mulatta/virology , Marburg Virus Disease/virology , Marburgvirus/physiology , Nanoparticles/therapeutic use , RNA, Small Interfering/therapeutic use , Animals , Antigens, Viral/immunology , Humans , Macaca mulatta/immunology , Marburg Virus Disease/pathology , Marburg Virus Disease/therapy , Marburgvirus/immunology , Nanoparticles/chemistry , RNA, Viral/metabolism , Survival Analysis , Treatment Outcome , Viremia/pathology
9.
J Infect Dis ; 209(4): 562-70, 2014 Feb 15.
Article in English | MEDLINE | ID: mdl-23990568

ABSTRACT

BACKGROUND: Marburg virus (MARV) infection causes severe morbidity and mortality in humans and nonhuman primates. Currently, there are no licensed therapeutics available for treating MARV infection. Here, we present the in vitro development and in vivo evaluation of lipid-encapsulated small interfering RNA (siRNA) as a potential therapeutic for the treatment of MARV infection. METHODS: The activity of anti-MARV siRNAs was assessed using dual luciferase reporter assays followed by in vitro testing against live virus. Lead candidates were tested in lethal guinea pig models of 3 different MARV strains (Angola, Ci67, Ravn). RESULTS: Treatment resulted in 60%-100% survival of guinea pigs infected with MARV. Although treatment with siRNA targeting other MARV messenger RNA (mRNA) had a beneficial effect, targeting the MARV NP mRNA resulted in the highest survival rates. NP-718m siRNA in lipid nanoparticles provided 100% protection against MARV strains Angola and Ci67, and 60% against Ravn. A cocktail containing NP-718m and NP-143m provided 100% protection against MARV Ravn. CONCLUSIONS: These data show protective efficacy against the most pathogenic Angola strain of MARV. Further development of the lipid nanoparticle technology has the potential to yield effective treatments for MARV infection.


Subject(s)
Lipids/administration & dosage , Marburg Virus Disease/drug therapy , Marburg Virus Disease/prevention & control , Nanoparticles/administration & dosage , Nanoparticles/chemistry , RNA, Small Interfering/administration & dosage , Adaptor Proteins, Signal Transducing , Animals , Carrier Proteins/analysis , Cytokines/blood , Drug Carriers/chemistry , Female , Genes, Viral , Guinea Pigs , Lipids/chemistry , Liver/chemistry , Marburg Virus Disease/genetics , Marburg Virus Disease/metabolism , Marburgvirus/drug effects , Marburgvirus/genetics , Mice , Mice, Inbred ICR , RNA, Small Interfering/chemistry , RNA-Binding Proteins , Survival Analysis , Viral Load
10.
Lancet ; 375(9729): 1896-905, 2010 May 29.
Article in English | MEDLINE | ID: mdl-20511019

ABSTRACT

BACKGROUND: We previously showed that small interfering RNAs (siRNAs) targeting the Zaire Ebola virus (ZEBOV) RNA polymerase L protein formulated in stable nucleic acid-lipid particles (SNALPs) completely protected guineapigs when administered shortly after a lethal ZEBOV challenge. Although rodent models of ZEBOV infection are useful for screening prospective countermeasures, they are frequently not useful for prediction of efficacy in the more stringent non-human primate models. We therefore assessed the efficacy of modified non-immunostimulatory siRNAs in a uniformly lethal non-human primate model of ZEBOV haemorrhagic fever. METHODS: A combination of modified siRNAs targeting the ZEBOV L polymerase (EK-1 mod), viral protein (VP) 24 (VP24-1160 mod), and VP35 (VP35-855 mod) were formulated in SNALPs. A group of macaques (n=3) was given these pooled anti-ZEBOV siRNAs (2 mg/kg per dose, bolus intravenous infusion) after 30 min, and on days 1, 3, and 5 after challenge with ZEBOV. A second group of macaques (n=4) was given the pooled anti-ZEBOV siRNAs after 30 min, and on days 1, 2, 3, 4, 5, and 6 after challenge with ZEBOV. FINDINGS: Two (66%) of three rhesus monkeys given four postexposure treatments of the pooled anti-ZEBOV siRNAs were protected from lethal ZEBOV infection, whereas all macaques given seven postexposure treatments were protected. The treatment regimen in the second study was well tolerated with minor changes in liver enzymes that might have been related to viral infection. INTERPRETATION: This complete postexposure protection against ZEBOV in non-human primates provides a model for the treatment of ZEBOV-induced haemorrhagic fever. These data show the potential of RNA interference as an effective postexposure treatment strategy for people infected with Ebola virus, and suggest that this strategy might also be useful for treatment of other emerging viral infections. FUNDING: Defense Threat Reduction Agency.


Subject(s)
Ebolavirus/genetics , Hemorrhagic Fever, Ebola/prevention & control , RNA Interference , RNA, Small Interfering/therapeutic use , Animals , Chlorocebus aethiops , Ebolavirus/isolation & purification , Ebolavirus/physiology , Female , Hemorrhagic Fever, Ebola/virology , Infusions, Intravenous , Interferon-alpha/biosynthesis , Interleukin-6/biosynthesis , Macaca mulatta , Male , Mice , Mice, Inbred ICR , RNA, Small Interfering/adverse effects , RNA, Small Interfering/pharmacology , Vero Cells/virology , Viral Proteins/genetics , Viremia , Virus Replication
11.
Oligonucleotides ; 19(2): 89-102, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19441890

ABSTRACT

Canonical small interfering RNA (siRNA) duplexes are potent activators of the mammalian innate immune system. The induction of innate immunity by siRNA is dependent on siRNA structure and sequence, method of delivery, and cell type. Synthetic siRNA in delivery vehicles that facilitate cellular uptake can induce high levels of inflammatory cytokines and interferons after systemic administration in mammals and in primary human blood cell cultures. This activation is predominantly mediated by immune cells, normally via a Toll-like receptor (TLR) pathway. The siRNA sequence dependency of these pathways varies with the type and location of the TLR involved. Alternatively nonimmune cell activation may also occur, typically resulting from siRNA interaction with cytoplasmic RNA sensors such as RIG1. As immune activation by siRNA-based drugs represents an undesirable side effect due to the considerable toxicities associated with excessive cytokine release in humans, understanding and abrogating this activity will be a critical component in the development of safe and effective therapeutics. This review describes the intracellular mechanisms of innate immune activation by siRNA, the design of appropriate sequences and chemical modification approaches, and suitable experimental methods for studying their effects, with a view toward reducing siRNA-mediated off-target effects.


Subject(s)
Antigen-Presenting Cells/immunology , Cytokines/immunology , Immunity, Innate/immunology , RNA, Small Interfering/immunology , Animals , Antigen-Presenting Cells/metabolism , Cytokines/metabolism , DEAD-box RNA Helicases/immunology , DEAD-box RNA Helicases/metabolism , Humans , Interferons/immunology , Interferons/metabolism , Lymphocyte Activation/immunology , RNA, Small Interfering/metabolism , Toll-Like Receptor 3/immunology , Toll-Like Receptor 3/metabolism , Toll-Like Receptor 7/immunology , Toll-Like Receptor 7/metabolism , Toll-Like Receptor 8/immunology , Toll-Like Receptor 8/metabolism
12.
J Clin Invest ; 119(3): 661-73, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19229107

ABSTRACT

siRNAs that specifically silence the expression of cancer-related genes offer a therapeutic approach in oncology. However, it remains critical to determine the true mechanism of their therapeutic effects. Here, we describe the preclinical development of chemically modified siRNA targeting the essential cell-cycle proteins polo-like kinase 1 (PLK1) and kinesin spindle protein (KSP) in mice. siRNA formulated in stable nucleic acid lipid particles (SNALP) displayed potent antitumor efficacy in both hepatic and subcutaneous tumor models. This was correlated with target gene silencing following a single intravenous administration that was sufficient to cause extensive mitotic disruption and tumor cell apoptosis. Our siRNA formulations induced no measurable immune response, minimizing the potential for nonspecific effects. Additionally, RNAi-specific mRNA cleavage products were found in tumor cells, and their presence correlated with the duration of target mRNA silencing. Histological biomarkers confirmed that RNAi-mediated gene silencing effectively inhibited the target's biological activity. This report supports an RNAi-mediated mechanism of action for siRNA antitumor effects, suggesting a new methodology for targeting other key genes in cancer development with siRNA-based therapeutics.


Subject(s)
Genetic Therapy , Neoplasms/genetics , Neoplasms/therapy , RNA Interference , RNA, Small Interfering/genetics , Animals , Cell Cycle Proteins/genetics , Disease Models, Animal , Gene Duplication , Mice , Neoplasms, Experimental/genetics , Neoplasms, Experimental/pathology , Polymerase Chain Reaction , Protein Serine-Threonine Kinases/deficiency , Protein Serine-Threonine Kinases/genetics , Proto-Oncogene Proteins/deficiency , Proto-Oncogene Proteins/genetics , RNA, Messenger/genetics , RNA, Neoplasm/genetics , Polo-Like Kinase 1
13.
RNA ; 14(9): 1823-33, 2008 Sep.
Article in English | MEDLINE | ID: mdl-18697923

ABSTRACT

RNA polymerase III (Pol III) expression systems for short hairpin RNAs (U6 shRNAs or chimeric VA1 shRNAs) or individually expressed sense/antisense small interfering RNA (siRNA) strands have been used to trigger RNA interference (RNAi) in mammalian cells. Here we show that individually expressed siRNA expression constructs produce 21-nucleotide siRNAs that strongly accumulate as duplex siRNAs in the nucleus of human cells, exerting sequence-specific silencing activity similar to cytoplasmic siRNAs derived from U6 or VA1-expressed hairpin precursors. In contrast, 29-mer siRNAs separately expressed as sense/antisense strands fail to elicit RNAi activity, despite accumulation of these RNAs in the nucleus. Our findings delineate different intracellular accumulation patterns for the three expression strategies and suggest the possibility of a nuclear RNAi pathway that requires 21-mer duplexes.


Subject(s)
RNA Interference , RNA, Catalytic/metabolism , RNA, Small Interfering/metabolism , RNA, Small Nuclear/genetics , Cell Line , Cell Nucleus/metabolism , Humans , Models, Molecular , Nucleic Acid Conformation , Promoter Regions, Genetic , RNA, Catalytic/genetics , RNA, Small Interfering/genetics
14.
Hum Gene Ther ; 19(10): 991-9, 2008 Oct.
Article in English | MEDLINE | ID: mdl-18713023

ABSTRACT

Activation of innate immunity has direct effects in modulating viral replication, tumor growth, angiogenesis, and inflammatory and other immunological processes. It is now established that unmodified siRNA can activate this innate immune response and therefore there is real potential for siRNA to elicit nonspecific therapeutic effects in a wide range of disease models. Here we demonstrate that in a murine model of influenza infection, the antiviral activity of siRNA is due primarily to immune stimulation elicited by the active siRNA duplexes and is not the result of therapeutic RNA interference (RNAi) as previously reported. We show that the misinterpretation stems from the use of a particular control green fluorescent protein (GFP) siRNA that we identify as having unusually low immunostimulatory activity compared with the active anti-influenza siRNA. Curiously, this GFP siRNA has served as a negative control for a surprising number of groups reporting therapeutic effects of siRNA. The inert immunologic profile of the GFP sequence was unique among a broad panel of published siRNAs, all of which could elicit significant interferon induction from primary immune cells. This panel included eight active siRNAs against viral, angiogenic, and oncologic targets, the reported therapeutic efficacy of which was based on comparison with the nonimmunostimulatory GFP siRNA. These results emphasize the need for researchers to anticipate, monitor, and adequately control for siRNA-mediated immune stimulation and calls into question the interpretation of numerous published reports of therapeutic RNAi in vivo. The use of chemically modified siRNA with minimal immunostimulatory capacity will help to delineate more accurately the mechanism of action underlying such studies.


Subject(s)
Influenza A virus/immunology , Influenza, Human/immunology , RNA, Small Interfering/immunology , Animals , Cell Line , Disease Models, Animal , Dogs , Genetic Therapy , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/immunology , Humans , Influenza A virus/genetics , Influenza, Human/genetics , Influenza, Human/therapy , Mice , Mice, Inbred BALB C , RNA, Small Interfering/genetics
15.
Mol Ther ; 15(9): 1663-9, 2007 Sep.
Article in English | MEDLINE | ID: mdl-17579574

ABSTRACT

RNA molecules such as single-stranded RNA (ssRNA) and small interfering RNA (siRNA) duplexes induce Toll-like receptor (TLR)-mediated immune stimulation after intracellular delivery. We have previously shown that selective incorporation of 2'-O-methyl (2'OMe) residues into siRNA abrogates cytokine production without reduction of gene silencing activity. Here we show that 2'OMe-modified RNA acts as a potent inhibitor of RNA-mediated cytokine induction in both human and murine systems. This activity does not require the direct incorporation of 2'OMe nucleotides into the immunostimulatory RNA or that the 2'OMe nucleotide-containing RNA be annealed as a complementary strand to form a duplex. Our results indicate that 2'OMe RNA acts as a potent antagonist of immunostimulatory RNA. We further show that 2'OMe RNA is able significantly to reduce both interferon-alpha (IFN-alpha) and interleukin-6 (IL-6) induction by the small-molecule TLR7 agonist loxoribine in human peripheral blood mononuclear cells (human PBMCs), in murine Flt3L dendritic cells (Flt3L DCs), and in vivo in mice. These results indicate that 2'OMe-modified RNA may have utility as an inhibitor of TLR7 with potential applications in the treatment of inflammatory and autoimmune diseases that involve TLR7-mediated immune stimulation.


Subject(s)
Cytokines/blood , RNA, Small Interfering/pharmacology , Toll-Like Receptor 7/antagonists & inhibitors , Animals , Cells, Cultured , Female , Guanosine/analogs & derivatives , Guanosine/pharmacology , Humans , Immunosuppressive Agents/administration & dosage , Immunosuppressive Agents/pharmacology , Injections, Intravenous , Interferon-alpha/blood , Leukocytes, Mononuclear/cytology , Leukocytes, Mononuclear/drug effects , Leukocytes, Mononuclear/metabolism , Mice , Mice, Inbred BALB C , RNA, Small Interfering/administration & dosage , RNA, Small Interfering/genetics , Toll-Like Receptor 7/genetics
16.
Nat Biotechnol ; 24(5): 566-71, 2006 May.
Article in English | MEDLINE | ID: mdl-16648841

ABSTRACT

RNA interference occurs when cytoplasmic small interfering RNAs (siRNAs) enter the RNA-induced silencing complex and one strand guides cleavage of the target RNA by the Argonaute 2 protein. A significant concern when applying siRNAs or expressing small hairpin RNAs (shRNAs) in human cells is activation of the interferon (IFN) response. Synthetic siRNAs harboring certain motifs can induce an immune response when delivered to mouse and human immune cells such as peripheral blood mononuclear cells, monocytes, plasmacytoid dendritic cells (pDCs) and nonplasmacytoid dendritic cells (mDCs). In the present study we have tested the immunostimulatory effects of lipid-delivered siRNAs versus Pol III promoter-expressed shRNAs in primary CD34+ progenitor-derived hematopoietic cells. We show that in this system, lipid-delivered siRNAs are potent inducers of IFNalpha and type I IFN gene expression, whereas the same sequences when expressed endogenously are nonimmunostimulatory.


Subject(s)
Antigens, CD34/biosynthesis , RNA, Small Interfering/genetics , RNA, Small Interfering/metabolism , Stem Cells/metabolism , Cell Separation , Dendritic Cells/cytology , Flow Cytometry , Genetic Techniques , Humans , In Vitro Techniques , Interferons/metabolism , Lipids/chemistry , Promoter Regions, Genetic , Transfection
18.
Annu Rev Phytopathol ; 42: 211-41, 2004.
Article in English | MEDLINE | ID: mdl-15283666

ABSTRACT

The genome structures of a large number of viruses transmitted by olpidium and plasmodiophorid vectors have been determined. The viruses are highly diverse, belonging to 12 genera in at least 4 families. Plasmodiophorids are now classified as protists rather than true fungi. This finding, along with the recognition of the great variety of viruses transmitted by olpidium and plasmodiophorid vectors, will likely lead to an elaboration of the details of in vitro and in vivo transmission mechanisms. Recent progress in elucidating the interaction between Cucumber necrosis virus (CNV) and its zoospore vector suggests that specific sites on the capsid as well as on the zoospore are involved in transmission. Moreover, some features of CNV/zoospore attachment are similar to poliovirus/host cell interactions, suggesting evolutionary conservation of functional features of plant and animal virus capsids.


Subject(s)
Disease Vectors , Plant Diseases/virology , Plant Viruses/pathogenicity , Animals , Cucumis sativus/virology , Eukaryota/physiology , Fungi/physiology , Phylogeny , Plant Viruses/genetics , Virion/genetics
19.
J Cosmet Sci ; 54(4): 367-78, 2003.
Article in English | MEDLINE | ID: mdl-14528389

ABSTRACT

Scalp hair length assessments by anatomical site, previously made in Florida theme parks on adults, are related to anatomical measurements to obtain estimates of free-hanging hair lengths in centimeters. A plot of the natural logarithm of the percent population versus these hair lengths provides a straight line and an equation that permits the estimation of the numbers of persons in the USA and larger populations with hair lengths up to 183 cm (just beyond ankle-length). Data were also collected via a literature search for even longer hair lengths (ankle-length or longer) to provide an equation to estimate the numbers of persons with exceptionally long hair. A comparative plot of these two equations suggests that "normal" anagen periods may be considerably longer than current estimates in the literature.


Subject(s)
Hair , Adolescent , Adult , Female , Humans , Male , Middle Aged , United States
20.
Endocrinology ; 144(10): 4616-25, 2003 Oct.
Article in English | MEDLINE | ID: mdl-12960048

ABSTRACT

The mechanism of induction of apoptosis by double-stranded RNA (dsRNA) is not fully characterized. The dsRNA is normally present in extremely low quantities in cells, but following infection with RNA viruses, large quantities of the dsRNA viral replicative intermediate may be produced triggering the antiviral response as well as cell death. In this report, transfection of polyinosinic-polycytidylic acid [poly(I:C)] into NIT 1 cells has been used as a model of intracellular dsRNA-induced beta-cell apoptosis. At 18 h post transfection, 45% of the cells were apoptotic as indicated by terminal deoxynucleotidyl transferase-mediated deoxyuridine triphosphate nick end-labeling (TUNEL) staining, and this was accompanied by an increase in nuclear factor kappaB (NF-kappaB) p50/p65 nuclear translocation and cleavage of caspases 3 and 8. The NF-kappaB inhibitor peptide, SN50, significantly reduced caspase-3 activity and the percentage of TUNEL-positive cells, substantiating a role for NF-kappaB in inducing intracellular dsRNA-mediated apoptosis. Concomitantly, RNA-dependent protein kinase activity was observed at 3 h post transfection along with phosphorylation and degradation of inhibitory kappaB-alpha. Expression of TRAIL (TNF-related apoptosis-inducing ligand), Fas, IL-15, and caspase-12 mRNAs was up-regulated in the presence of poly(I:C) but not when SN50 was also added. In contrast, there was no change detected in Fas, Fas-associated death domain, Bcl-2, Bcl-xl, Bax, p53, or XIAP(X-linked inhibitor of apoptosis protein) expression up to 12 h after poly(I:C) transfection. In addition, caspase-12 was cleaved, and phosphorylation of eukaryotic initiation factor 2alpha occurred, suggesting that an endoplasmic reticulum stress pathway was involved in addition to NF-kappaB induction of an extrinsic pathway, possibly mediated by TNF-related apoptosis-inducing ligand.


Subject(s)
Apoptosis/physiology , Caspases/metabolism , Islets of Langerhans/physiology , Membrane Glycoproteins/metabolism , NF-kappa B/metabolism , Poly I-C/pharmacology , Tumor Necrosis Factor-alpha/metabolism , Animals , Apoptosis Regulatory Proteins , Biological Transport/physiology , Caspase 12 , Caspase 3 , Caspase 8 , Caspase 9 , Caspase Inhibitors , Caspases/chemistry , Caspases/drug effects , Cell Line , Cell Nucleus/metabolism , Enzyme Inhibitors/pharmacology , Eukaryotic Initiation Factor-2/metabolism , I-kappa B Proteins/metabolism , Interleukin-15/genetics , Islets of Langerhans/drug effects , Lipids/pharmacology , Membrane Glycoproteins/chemistry , Membrane Glycoproteins/drug effects , Membrane Glycoproteins/genetics , NF-KappaB Inhibitor alpha , Nitric Oxide/biosynthesis , Poly I-C/pharmacokinetics , RNA, Double-Stranded/pharmacology , TNF-Related Apoptosis-Inducing Ligand , Tumor Necrosis Factor-alpha/genetics , Up-Regulation , eIF-2 Kinase/metabolism , fas Receptor/genetics
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