Floral scent changes in response to pollen removal are rare in buzz-pollinated Solanum.

MAIN CONCLUSION: One of seven Solanum taxa studied displayed associations between pollen presence and floral scent composition and volume, suggesting buzz-pollinated plants rarely use scent as an honest cue for foraging pollinators. Floral scent influences the recruitment, learning, and behaviour of floral visitors. Variation in floral scent can provide information on the amount of reward available or whether a flower has been visited recently and may be particularly important in species with visually concealed rewards. In many buzz-pollinated flowers, tubular anthers opening via small apical pores (poricidal anthers) visually conceal pollen and appear similar regardless of pollen quantity within the anther. We investigated whether pollen removal changes floral scent composition and emission rate in seven taxa of buzz-pollinated Solanum (Solanaceae). We found that pollen removal reduced both the overall emission of floral scent and the emission of specific compounds (linalool and farnesol) in S. lumholtzianum. Our findings suggest that in six out of seven buzz-pollinated taxa studied here, floral scent could not be used as a signal by visitors as it does not contain information on pollen availability.

Twenty years of big plant genera.

In 2004, David Frodin published a landmark review of the history and concepts of big plant genera. Two decades of taxonomic activity have taken place since, coinciding with a revolution in phylogenetics and taxonomic bioinformatics. Here we use data from the World Flora Online (WFO) to provide an updated list of big (more than 500 species) and megadiverse (more than 1000 species) flowering plant genera and highlight changes since 2004. The number of big genera has increased from 57 to 86; today one of every four plant species is classified as a member of a big genus, with 14% in just 28 megadiverse genera. Most (71%) of the growth in big genera since 2000 is the result of new species description, not generic re-circumscription. More than 15% of all currently accepted flowering plant species described in the last two decades are in big genera, suggesting that groups previously considered intractable are now being actively studied taxonomically. Despite this rapid growth in big genera, they remain a significant yet understudied proportion of plant diversity. They represent a significant proportion of global plant diversity and should remain a priority not only for taxonomy but for understanding global diversity patterns and plant evolution in general.

How to fill the biodiversity data gap: Is it better to invest in fieldwork or curation?

Data gaps and biases are two important issues that affect the quality of biodiversity information and downstream results. Understanding how best to fill existing gaps and account for biases is necessary to improve our current information most effectively. Two current main approaches for obtaining and improving data include (1) curation of biological collections, and (2) fieldwork. However, the comparative effectiveness of these approaches in improving biodiversity data remains little explored. We used the Flora de Bogotá project to study the magnitude of change in species richness, spatial coverage, and sample coverage of plant records based on curation versus fieldwork. The process of curation resulted in a decrease in species richness (synonym and error removal), but it significantly increased the number of records per species. Fieldwork contributed to a slight increase in species richness, via accumulation of new records. Additionally, curation led to increases in spatial coverage, species observed by locality, the number of plant records by species, and localities by species compared to fieldwork. Overall, curation was more efficient in producing new information compared to fieldwork, mainly because of the large number of records available in herbaria. We recommend intensive curatorial work as the first step in increasing biodiversity data quality and quantity, to identify bias and gaps at the regional scale that can then be targeted with fieldwork. The stepwise strategy would enable fieldwork to be planned more cost-effectively given the limited resources for biodiversity exploration and characterization.

Functional and ecological diversification of underground organs in Solanum.

The evolution of geophytes in response to different environmental stressors is poorly understood largely due to the great morphological variation in underground plant organs, which includes species with rhizomatous structures or underground storage organs (USOs). Here we compare the evolution and ecological niche patterns of different geophytic organs in Solanum L., classified based on a functional definition and using a clade-based approach with an expert-verified specimen occurrence dataset. Results from PERMANOVA and Phylogenetic ANOVAs indicate that geophytic species occupy drier areas, with rhizomatous species found in the hottest areas whereas species with USOs are restricted to cooler areas in the montane tropics. In addition, rhizomatous species appear to be adapted to fire-driven disturbance, in contrast to species with USOs that appear to be adapted to prolonged climatic disturbance such as unfavorable growing conditions due to drought and cold. We also show that the evolution of rhizome-like structures leads to changes in the relationship between range size and niche breadth. Ancestral state reconstruction shows that in Solanum rhizomatous species are evolutionarily more labile compared to species with USOs. Our results suggest that underground organs enable plants to shift their niches towards distinct extreme environmental conditions and have different evolutionary constraints.

A revision of the South American species of the Morelloid clade (Solanum L., Solanaceae).

The Morelloid clade, also known as the black nightshades or "Maurella" (Morella), is one of the 10 major clades within the mega-diverse genus Solanum L. The clade is most diverse in the central to southern Andes, but species occur around the tropics and subtropics, some extending well into the temperate zone. Plants of the group vary from herbs to short-lived perennials to perennial shrubs that are distinctly woody at the base, they have small mostly white or purplish white flowers and small juicy berries. Due to the complex morphological variation and weedy nature of these plants, coupled with the large number of published synonyms (especially for European taxa), our understanding of species limits and diversity in the Morelloid clade has lagged behind that of other clades in Solanum. Here we provide the last in a three-part series of monographic treatments of the morelloid solanums (see PhytoKeys Vols. 106, 125), treating the 62 species occurring in South America. This region is by far the most diverse in the clade, both in terms of species number and morphological diversity. We provide complete synonymy, nomenclatural details, including lecto- and neotypifications where needed, common names and uses, morphological descriptions, illustrations to aid identification both in herbaria and in the field, and distribution maps for all native, non-cultivated species. We include a key to all species, a synoptic character list for the species treated here and links to synoptic online keys for all species of the Morelloid clade. Preliminary conservation assessments following IUCN guidelines are also provided for all native species.

Phylogenomic discovery of deleterious mutations facilitates hybrid potato breeding.

Hybrid potato breeding will transform the crop from a clonally propagated tetraploid to a seed-reproducing diploid. Historical accumulation of deleterious mutations in potato genomes has hindered the development of elite inbred lines and hybrids. Utilizing a whole-genome phylogeny of 92 Solanaceae and its sister clade species, we employ an evolutionary strategy to identify deleterious mutations. The deep phylogeny reveals the genome-wide landscape of highly constrained sites, comprising ∼2.4% of the genome. Based on a diploid potato diversity panel, we infer 367,499 deleterious variants, of which 50% occur at non-coding and 15% at synonymous sites. Counterintuitively, diploid lines with relatively high homozygous deleterious burden can be better starting material for inbred-line development, despite showing less vigorous growth. Inclusion of inferred deleterious mutations increases genomic-prediction accuracy for yield by 24.7%. Our study generates insights into the genome-wide incidence and properties of deleterious mutations and their far-reaching consequences for breeding.

Understanding climate change impacts on biome and plant distributions in the Andes: Challenges and opportunities.

Aim: Climate change is expected to impact mountain biodiversity by shifting species ranges and the biomes they shape. The extent and regional variation in these impacts are still poorly understood, particularly in the highly biodiverse Andes. Regional syntheses of climate change impacts on vegetation are pivotal to identify and guide research priorities. Here we review current data, knowledge and uncertainties in past, present and future climate change impacts on vegetation in the Andes. Location: Andes. Taxon: Plants. Methods: We (i) conducted a literature review on Andean vegetation responses to past and contemporary climatic change, (ii) analysed future climate projections for different elevations and slope orientations at 19 Andean locations using an ensemble of model outputs from the Coupled Model Intercomparison Project 5, and (iii) calculated changes in the suitable climate envelope area of Andean biomes and compared these results to studies that used species distribution models. Results: Future climatic changes (2040-2070) are projected to be stronger at high-elevation areas in the tropical Andes (up to 4°C under RCP 8.5), while in the temperate Andes temperature increases are projected to be up to 2°C. Under this worst-case scenario, temperate deciduous forests and the grasslands/steppes from the Central and Southern Andes are predicted to show the greatest losses of suitable climatic space (30% and 17%-23%, respectively). The high vulnerability of these biomes contrasts with the low attention from researchers modelling Andean species distributions. Critical knowledge gaps include a lack of an Andean wide plant checklist, insufficient density of weather stations at high-elevation areas, a lack of high-resolution climatologies that accommodates the Andes' complex topography and climatic processes, insufficient data to model demographic and ecological processes, and low use of palaeo data for distribution modelling. Main conclusions: Climate change is likely to profoundly affect the extent and composition of Andean biomes. Temperate Andean biomes in particular are susceptible to substantial area contractions. There are, however, considerable challenges and uncertainties in modelling species and biome responses and a pressing need for a region-wide approach to address knowledge gaps and improve understanding and monitoring of climate change impacts in these globally important biomes.

Geographic distribution, conservation status and lectotypification of Pedersenia weberbaueri (Suess.) Holub (Amaranthaceae), an endemic and highly threatened shrub from the Marañón valley of Peru

The present study analyses the geographical distribution, conservation status, and nomenclature of Peruvian endemic Pedersenia weberbaueri. The species distribution was modelled using MaxEnt based on occurrence data and bioclimatic variables. The conservation status of the species was assessed against the categories and criteria of the IUCN Red List, and nomenclatural and typification issues were resolved. The potential distribution map of P. weberbaueri shows that the species is restricted to the seasonally dry tropical forests of the Marañón valley within a narrow latitudinal, longitudinal, and elevational range. Consequently, we propose to categorise the species as Endangered (EN) and provide the necessary information for its inclusion in the IUCN Red List. Finally, we resolve nomenclatural issues and designate a lectotype. The results contribute to the biological knowledge of P. weberbaueri and support subsequent conservation management plans.

El presente estudio analiza la distribución geográfica, el estado de conservación y la nomenclatura de la endémica peruana Pedersenia weberbaueri. La distribución de especies se modeló usando MaxEnt con base en datos de ocurrencia y variables bioclimáticas. Se evaluó el estado de conservación de la especie frente a las categorías y criterios de la Lista Roja de la UICN y se resolvieron cuestiones de nomenclatura y tipificación. El mapa de distribución potencial de P. weberbaueri muestra que la especie está restringida a los bosques tropicales estacionalmente secos del valle del Marañón dentro de un estrecho rango latitudinal, longitudinal y altitudinal. En consecuencia, proponemos categorizar a la especie como En Peligro (EN) y brindar la información necesaria para su inclusión en la Lista Roja de la UICN. Finalmente, resolvemos cuestiones de nomenclatura y designamos un lectotipo. Los resultados contribuyen al conocimiento biológico de P. weberbaueri y respaldan los planes de manejo de conservación posteriores.

Phylogenomic discordance suggests polytomies along the backbone of the large genus Solanum.

PREMISE: Evolutionary studies require solid phylogenetic frameworks, but increased volumes of phylogenomic data have revealed incongruent topologies among gene trees in many organisms both between and within genomes. Some of these incongruences indicate polytomies that may remain impossible to resolve. Here we investigate the degree of gene-tree discordance in Solanum, one of the largest flowering plant genera that includes the cultivated potato, tomato, and eggplant, as well as 24 minor crop plants. METHODS: A densely sampled species-level phylogeny of Solanum is built using unpublished and publicly available Sanger sequences comprising 60% of all accepted species (742 spp.) and nine regions (ITS, waxy, and seven plastid markers). The robustness of this topology is tested by examining a full plastome dataset with 140 species and a nuclear target-capture dataset with 39 species of Solanum (Angiosperms353 probe set). RESULTS: While the taxonomic framework of Solanum remained stable, gene tree conflicts and discordance between phylogenetic trees generated from the target-capture and plastome datasets were observed. The latter correspond to regions with short internodal branches, and network analysis and polytomy tests suggest the backbone is composed of three polytomies found at different evolutionary depths. The strongest area of discordance, near the crown node of Solanum, could potentially represent a hard polytomy. CONCLUSIONS: We argue that incomplete lineage sorting due to rapid diversification is the most likely cause for these polytomies, and that embracing the uncertainty that underlies them is crucial to understand the evolution of large and rapidly radiating lineages.

Around the world in 40 million years: Phylogeny and biogeography of Tecomeae (Bignoniaceae).

Intercontinental disjunct distributions can arise from vicariance, long distance dispersal, or both. Tecomeae (Bignoniaceae) are a nearly cosmopolitan clade of flowering plants providing us with an excellent opportunity to investigate global distribution patterns. While the tribe contains only about 57 species, it has achieved a distribution that is not only pantropical, but also extends into the temperate zones in both the Northern and Southern hemispheres. This distribution is similar to the distribution of its sister group, a clade of about 750 spp. that includes most remaining taxa in Bignoniaceae. To infer temporal and spatial patterns of dispersal, we generated a phylogeny of Tecomeae by gathering sequence data from chloroplast and nuclear markers for 41 taxa. Fossil calibrations were used to determine divergence times, and ancestral states were reconstructed to infer its biogeographic history. We found support for a South American origin and a crown age of the tribe estimated at ca. 40 Ma. Two dispersal events seem to have happened during the Eocene-Oligocene, one from South America to the Old World, and another from South America to North America. Furthermore, two other dispersal events seem to have taken place during the Miocene, one from North America to Asia, and another from Australia to South America. We suggest that intercontinental dispersal via land bridges and island hopping, as well as sweepstakes of long distance dispersal from the Eocene to the present explain the global distribution of Tecomeae.

Monograph of Doselia (Solanaceae), a new hemiepiphytic genus endemic to the northern Andes.

A new genus, Doselia A.Orejuela & Särkinen, gen. nov., is described in the tribe Solandreae (Solanaceae) consisting of four species of hemiepiphytic lianas endemic to the premontane forests of the Colombian and Ecuadorian Andes. The genus is distinguished based on the membranous leaves, usually sparsely pubescent with eglandular simple trichomes, pseudo-verticillate leaf arrangement, and elongated, pendulous, and few-flowered inflorescences with showy flowers and conical fruits. Three new combinations are made to transfer species to the new genus previously described as part of the polyphyletic genus Markea Rich. (Doseliaepifita (S.Knapp) A.Orejuela & Särkinen, comb. nov., D.huilensis (A.Orejuela & J.M.Vélez) A.Orejuela & Särkinen, comb. nov. and D.lopezii (Hunz.) A.Orejuela & Särkinen, comb. nov.). One new species is described from the western slopes of the eastern cordillera of the Colombian Andes, known only from three localities in the Boyacá, Santander, and Tolima departments (Doseliagalilensis A.Orejuela & Villanueva, sp. nov.). The new species is unique in the genus in having glabrescent adult leaves, green-purplish calyces and long, greenish-white, infundibuliform corollas with delicate purplish veins and large lobes tinged with purple, and pubescent styles. Here we provide a revision of Doselia with a distribution map of all species, an identification key, photographs, preliminary conservation assessments, and line drawings of all four species.

ResumenUn nuevo género, Doselia A.Orejuela & Särkinen, gen. nov., es descrito en la tribu Solandreae (Solanaceae), conformado por cuatro especies de lianas hemiepífitas endémicas de los bosques premontanos de los Andes de Colombia y Ecuador. El género se distingue por sus hojas membranáceas con tricomas simples no glandulares, el arreglo pseudoverticilado de las hojas y sus inflorescencias paucifloras, largo pedunculadas y péndulas, flores vistosas y frutos cónicos. Se proponen tres nuevas combinaciones para acomodar especies previamente descritas en el polifilético género Markea Rich. (Doseliaepifita (S.Knapp) A.Orejuela & Särkinen, comb. nov., D.huilensis (A.Orejuela & J.M.Vélez) A.Orejuela & Särkinen, comb. nov. and D.lopezii (Hunz.) A.Orejuela & Särkinen, comb. nov.) Una nueva especie es descrita aquí proveniente de la vertiente occidental de la cordillera Oriental de los Andes colombianos, y conocida únicamente de tres localidades en los departamentos de Boyacá, Santander y Tolima (Doseliagalilensis A.Orejuela & Villanueva, sp. nov.). La nueva especie se caracteriza por sus hojas glabrescentes cuando adultas, cáliz verde-púrpura, corolas infundibuliformes grandes, blanco-verdosas con una reticulación fina de venas púrpuras, lóbulos corolinos grandes y teñidos de púrpura en su lado ventral y estilos pubescentes. El nuevo género es formalmente descrito incluyendo un mapa de distribución, una clave taxonómica y fotografías e ilustraciones para sus cuatro especies.

Botanical Monography in the Anthropocene.

Unprecedented changes in the Earth's biota are prompting urgent efforts to describe and conserve plant diversity. For centuries, botanical monographs - comprehensive systematic treatments of a family or genus - have been the gold standard for disseminating scientific information to accelerate research. The lack of a monograph compounds the risk that undiscovered species become extinct before they can be studied and conserved. Progress towards estimating the Tree of Life and digital information resources now bring even the most ambitious monographs within reach. Here, we recommend best practices to complete monographs urgently, especially for tropical plant groups under imminent threat or with expected socioeconomic benefits. We also highlight the renewed relevance and potential impact of monographies for the understanding, sustainable use, and conservation of biodiversity.

Dichotomous keys to the species of Solanum L. (Solanaceae) in continental Africa, Madagascar (incl. the Indian Ocean islands), Macaronesia and the Cape Verde Islands.

Solanum L. (Solanaceae) is one of the largest genera of angiosperms and presents difficulties in identification due to lack of regional keys to all groups. Here we provide keys to all 135 species of Solanum native and naturalised in Africa (as defined by World Geographical Scheme for Recording Plant Distributions): continental Africa, Madagascar (incl. the Indian Ocean islands of Mauritius, La Réunion, the Comoros and the Seychelles), Macaronesia and the Cape Verde Islands. Some of these have previously been published in the context of monographic works, but here we include all taxa. The paper is designed to be used in conjunction with the web resource Solanaceae Source (www.solanaceaesource.org) and hyperlinks provide access to online descriptions, synonymy and images (where available) of each species. All taxa treated and specimens seen are included in searchable Suppl. material 1, 2.

A revision of the Morelloid Clade of Solanum L. (Solanaceae) in North and Central America and the Caribbean.

The Morelloid Clade, also known as the black nightshades or "Maurella" (Morella), is one of the 10 major clades within the mega-diverse genus Solanum L. The clade is most species rich in the central to southern Andes, but species occur around the tropics and subtropics, some extending well into the temperate zone. Plants of the group are herbaceous or short-lived perennials, with small white or purplish white flowers, and small juicy berries. Due to the complex morphological variation and weedy nature of these plants, coupled with the large number of published synonyms (especially for European taxa), our understanding of species limits and diversity in the Morelloid Clade has lagged behind that of other major groups in Solanum. Here we provide the second in a three-part series of revisions of the morelloid solanums treating the species occurring in North and Central America and the Caribbean (for the Old World see "PhytoKeys 106", the third part will treat species of South America). Synonymy, morphological descriptions, distribution maps, and common names and uses are provided for all 18 species occurring in this region. We treat 10 of these species as native, and eight as putatively naturalised, introduced and/or invasive in the region. We provide complete descriptions with nomenclatural details, including lecto- and neotypifications, for all species. Keys to all species occurring in the whole region and for each area within it (i.e., North America, Central America and Mexico, and the islands of the Caribbean), illustrations to aid identification both in herbaria and in the field, and distribution maps are provided. Preliminary conservation assessments are provided for all species. Details of all specimens examined are provided in three Supplementary materials sections.

A new black nightshade (Morelloid clade, Solanum, Solanaceae) from the caatinga biome of north-eastern Brazil with a key to Brazilian morelloids.

Solanumcaatingae sp. nov. is described from the arid caatinga biome of north-eastern Brazil. It is known from only a few specimens, but these were found amongst the many sheets of the widespread circumtropical weed S.americanum Mill.; it is possible that more will be found once its distinct nature has been recognised. It differs from S.americanum and all other herbaceous black nightshades known in Brazil, in its combination of glandular pubescence and shiny black fruit with small spreading sepals. The description of S.caatingae brings the number of morelloid solanums in Brazil to seven and a key is provided for their identification.

A revision of the Old World Black Nightshades (Morelloid clade of Solanum L., Solanaceae).

The Morelloid clade, also known as the black nightshades or "Maurella" (Morella), is one of the 10 major clades within Solanum L. The pantropical clade consists of 75 currently recognised non-spiny herbaceous and suffrutescent species with simple or branched hairs with or without glandular tips, with a centre of distribution in the tropical Andes. A secondary centre of diversity is found in Africa, where a set of mainly polyploid taxa occur. A yet smaller set of species is found in Australasia and Europe, including Solanum nigrum L., the type of the genus Solanum. Due to the large number of published synonyms, combined with complex morphological variation, our understanding of species limits and diversity in the Morelloid clade has remained poor despite detailed morphological studies carried out in conjunction with breeding experiments. Here we provide the first taxonomic overview since the 19th century of the entire group in the Old World, including Africa, Asia, Australia, Europe and islands of the Pacific. Complete synonymy, morphological descriptions, distribution maps and common names and uses are provided for all 19 species occurring outside the Americas (i.e. Africa, Asia, Australia, Europe and islands of the Pacific). We treat 12 species native to the Old World, as well as 7 taxa that are putatively introduced and/or invasive in the region. The current knowledge of the origin of the polyploid species is summarised. A key to all of the species occurring in the Old World is provided, together with line drawings and colour figures to aid identification both in herbaria and in the field. Preliminary conservation assessments are provided for all species.

A new commelinid monocot seed fossil from the early Eocene previously identified as Solanaceae.

PREMISE OF THE STUDY: Fossils provide minimum age estimates for extant lineages. Here we critically evaluate Cantisolanum daturoides Reid & Chandler and two other early putative seed fossils of Solanaceae, an economically important plant family in the Asteridae. METHODS: Three earliest seed fossil taxa of Solanaceae from the London Clay Formation (Cantisolanum daturoides) and the Poole and Branksome Sand Formations (Solanum arnense Chandler and Solanispermum reniforme Chandler) were studied using x-ray microcomputed tomography (MCT) and scanning electron microscopy (SEM). KEY RESULTS: The MCT scans of Cantisolanum daturoides revealed a high level of pyrite preservation at the cellular level. Cantisolanum daturoides can be clearly excluded from Solanaceae and has more affinities to the commelinid monocots based on a straight longitudinal axis, a prominent single layer of relatively thin-walled cells in the testa, and a clearly differentiated micropyle surrounded by radially elongated and inwardly curved testal cells. While the MCT scans show no internal preservation in Solanum arnense and Solanispermum reniforme, SEM images show the presence of several characteristics that allow the placement of these taxa at the stem node of Solanaceae. CONCLUSIONS: Cantisolanum daturoides is likely a member of commelinid monocots and not Solanaceae as previously suggested. The earliest fossil record of Solanaceae is revised to consist of fruit fossil with inflated calyces from the early Eocene of Patagonia (52 Ma) and fossilized seeds from the early to mid-Eocene of Europe (48-46 Ma). The new identity for Cantisolanum daturoides does not alter a late Cretaceous minimum age for commelinids.

Amazon plant diversity revealed by a taxonomically verified species list.

Recent debates on the number of plant species in the vast lowland rain forests of the Amazon have been based largely on model estimates, neglecting published checklists based on verified voucher data. Here we collate taxonomically verified checklists to present a list of seed plant species from lowland Amazon rain forests. Our list comprises 14,003 species, of which 6,727 are trees. These figures are similar to estimates derived from nonparametric ecological models, but they contrast strongly with predictions of much higher tree diversity derived from parametric models. Based on the known proportion of tree species in neotropical lowland rain forest communities as measured in complete plot censuses, and on overall estimates of seed plant diversity in Brazil and in the neotropics in general, it is more likely that tree diversity in the Amazon is closer to the lower estimates derived from nonparametric models. Much remains unknown about Amazonian plant diversity, but this taxonomically verified dataset provides a valid starting point for macroecological and evolutionary studies aimed at understanding the origin, evolution, and ecology of the exceptional biodiversity of Amazonian forests.