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1.
Med Phys ; 51(6): 4447-4457, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38709978

ABSTRACT

BACKGROUND: The use of Computed Tomography (CT) imaging data to create 3D printable patient-specific devices for radiation oncology purposes is already well established in the literature and has shown to have superior conformity than conventional methods. Using non-ionizing radiation imaging techniques such as photogrammetry or laser scanners in-lieu of a CT scanner presents many desirable benefits including reduced imaging dose and fabrication of the device can be completed prior to simulation. With recent advancements in smartphone-based technology, photographic and LiDAR-based technologies are more readily available than ever before and to a high level of quality. As a result, these non-ionizing radiation imaging methods are now able to generate patient-specific devices that can be acceptable for clinical use. PURPOSE: In this work, we aim to determine if smartphones can be used by radiation oncologists or other radiation oncology staff to generate bolus or brachytherapy surface moulds instead of conventional CT with equivalent or comparable accuracy. METHODS: This work involved two separate studies: a phantom and participant study. For the phantom study, a RANDO anthropomorphic phantom (limited to the nose region) was used to generate 3D models based on three different imaging techniques: conventional CT, photogrammetry & LiDAR which were both acquired on a smartphone. Virtual boli were designed in Blender and 3D printed from PLA plastic material. The conformity of each printed boli was assessed by measuring the air gap volume and approximate thickness between the phantom & bolus acquired together on a CT. For the participant study, photographs, and a LiDAR scan of four volunteers were captured using an iPhone 13 Pro™ to assess their feasibility for generating human models. Each virtual 3D model was visually assessed to identify any issues in their reconstruction. The LiDAR models were registered to the photogrammetry models where a distance to agreement analysis was performed to assess their level of similarity. Additionally, a 3D virtual bolus was designed and printed using ABS material from all models to assess their conformity onto the participants skin surface using a verbal feedback method. RESULTS: The photogrammetry derived bolus showed comparable conformity to the CT derived bolus while the LiDAR derived bolus showed poorer conformity as shown by their respective air gap volume and thickness measurements. The reconstruction quality of both the photogrammetry and LiDAR models of the volunteers was inadequate in regions of facial hair and occlusion, which may lead to clinically unacceptable patient-specific device that are created from these areas. All participants found the photogrammetry 3D printed bolus to conform to their nose region with minimal room to move while three of the four participants found the LiDAR was acceptable and could be positioned comfortably over their entire nose. CONCLUSIONS: Smartphone-based photogrammetry and LiDAR software show great potential for future use in generating 3D reference models for radiation oncology purposes. Further investigations into whether they can be used to fabricate clinically acceptable patient-specific devices on a larger and more diverse cohort of participants and anatomical locations is required for a thorough validation of their clinical usefulness.


Subject(s)
Radiation Oncology , Smartphone , Radiation Oncology/instrumentation , Humans , Phantoms, Imaging , Printing, Three-Dimensional , Brachytherapy/instrumentation , Tomography, X-Ray Computed/instrumentation
2.
Cureus ; 16(4): e58948, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38800225

ABSTRACT

Background Despite the increasing use of wearable devices worldwide, concise data on these instruments in patients with systemic autoimmune rheumatic diseases, including idiopathic inflammatory myopathies (IIM) and primary systemic vasculitis (PSV), are lacking. Objectives The aim of this study is to investigate the knowledge and use of wearable devices and to assess their impact on the general quality of life of patients with IIM and PSV. Moreover, we compared these characteristics between patients with IIM and PSV users and non-users of wearable devices. Methods This single-center, cross-sectional study was conducted between January 2023 and June 2023. We included adult patients with IIM and PSV and a control group (CTR) and evaluated their use of cell phones and wearables, level of physical activity, and quality of life. Results A total of 132 patients with IIM, 82 with PSV, and 178 in the CTR were evaluated. Overall, 169 patients and 144 in the CTR were aware of wearable devices, of whom 50 (29.6%) and 47 (32.6%), respectively, had already used this technology. In addition, the IPAQ-Mets and EQ-5D scores were lower in the IIM and PSV groups than in the CTR, and the fatigue severity scale (FSS) scores were higher in the IIM and PSV groups than in the CTR. Patients who used the devices showed FSS scores of 29 (18-40) points, with higher levels of IPAQ-Mets among device users, indicating greater physical activity than among nonusers. Conclusion Based on the results, the use of wearable devices is associated with better fatigue and IPAQ scores. Possibly, the use of such devices can have an impact on better lifestyle habits among these patients.

3.
Clin Exp Rheumatol ; 42(7): 1451-1458, 2024 Jul.
Article in English | MEDLINE | ID: mdl-38451142

ABSTRACT

OBJECTIVES: Transcranial direct current stimulation (tDCS) combined with aerobic exercise (tDCS-AE) effectively reduces fatigue in patients with fibromyalgia. However, no study has assessed this method in systemic lupus erythematosus (SLE) patients with significant fatigue. Therefore, we evaluated the safety and efficacy of tDCS-AE for significant fatigue symptoms in adult female SLE patients. METHODS: This randomised, sham-controlled, double-blind study included 25 patients with SLE in remission or low disease activity (SLEDAI-2K £4) and with significant fatigue [≥36 points on the Fatigue Severity Scale (FSS) or ≥38 points on the Modified Fatigue Scale (MFIS)]. The patients received sham or tDCS for five consecutive days. The anode and cathode were positioned at M1 and Fp2, respectively (international 10-20 EEG system). tDCS was applied at an intensity of 2mA, and density of 0.057mA/cm2 in the tDCS-AE group. Both groups underwent combined low-intensity treadmill exercise. FSS, MFIS, pain visual analogue scale, physical activity, and sleep quality were evaluated at baseline and on days 7, 30, and 60. Adherence and safety were assessed using a standardised questionnaire. RESULTS: Improvement in fatigue levels was observed in both groups. However, a sustained reduction in fatigue levels on days 30 and 60 occurred only with tDCS-AEs (p<0.05). No significant differences were observed in pain level, sleep quality, or physical activity. No disease flares occurred and the adverse effects were mild and transient. Finally, the patient's adherence to the treatment was satisfactory. CONCLUSIONS: Despite isolated AEs, there was an improvement in fatigue, however, only tDCS-AE maintained significant and sustained improvement.


Subject(s)
Fatigue , Lupus Erythematosus, Systemic , Transcranial Direct Current Stimulation , Humans , Double-Blind Method , Female , Lupus Erythematosus, Systemic/complications , Lupus Erythematosus, Systemic/therapy , Lupus Erythematosus, Systemic/physiopathology , Lupus Erythematosus, Systemic/diagnosis , Fatigue/etiology , Fatigue/therapy , Fatigue/physiopathology , Adult , Middle Aged , Treatment Outcome , Exercise Therapy/methods , Exercise , Severity of Illness Index , Time Factors , Sleep Quality
4.
Cureus ; 16(1): e51462, 2024 Jan.
Article in English | MEDLINE | ID: mdl-38298319

ABSTRACT

To the best of our knowledge, this is the first case series to assess a combined technique of transcranial direct current stimulation (tDCS - a non-pharmacological and non-invasive brain stimulation) and aerobic exercise in one patient with systemic lupus erythematosus (SLE) and another with rheumatoid arthritis (RA) and significant chronic fatigue. We conducted five sessions of tDCS combined with low-intensity treadmill exercise. Fatigue levels were assessed using the Fatigue Severity Scale and the Visual Analog Scale for fatigue before (pre), immediately after five tDCS sessions (post-zero), and after six months (post-6-mo). The level of fatigue decreased, and functionality improved significantly post-zero and remained sustainable post-6-mo in both SLE and RA cases. There was only one mild and transient side effect (headache) specifically in the patient with RA, and no disease reactivation occurred in any of the cases. Our data showed that tDCS combined with aerobic exercise appears to be safe and promising for reducing fatigue and improving functionality in patients with SLE and RA. Randomized studies with larger sample sizes are required to corroborate our findings.

5.
J Med Radiat Sci ; 71 Suppl 2: 27-36, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38400611

ABSTRACT

INTRODUCTION: Because of the co-location of critical organs at risk, base of skull tumours require steep dose gradients to achieve the prescribed dosimetric criteria. When available, proton beam therapy (PBT) is often considered a desirable modality for these cases, but in many instances, compromises in target coverage are still required to achieve critical organ at risk (OAR) tolerance doses. A number of techniques have been proposed to further improve the penumbra of PBT. In the current study, we propose a novel, collimator-free treatment planning technique that combines high-energy shoot-through proton beams with conventional Bragg peak spot placement. The small spot size of the high-energy pencil beams provides a sharp penumbra at the target boundary, and the Bragg peak spots provide a higher linear energy transfer (LET) boost to the target centre. METHODS: Three base of skull chordoma patients were retrospectively planned with three different PBT treatment planning techniques: (1) conventional intensity-modulated proton therapy (IMPT); (2) high-energy proton arc therapy (HE-PAT); and (3) the novel technique combining HE-PAT and IMPT, referred to as single high-energy arc with Bragg peak boost (SHARP). The Monaco 6 treatment planning system was used. RESULTS: SHARP was found to improve the PBT penumbra in the plane perpendicular to the HE-PAT beams. Minimal penumbra differences were observed in the plane of the HE-PAT beams. SHARP reduced dose-averaged LET to surrounding organs at risk. CONCLUSION: A novel PBT treatment planning technique was successfully implemented. Initial results indicate the potential for SHARP to improve the penumbra of PBT treatments for base of skull tumours.


Subject(s)
Neoplasms , Proton Therapy , Radiotherapy, Intensity-Modulated , Humans , Protons , Radiotherapy Dosage , Retrospective Studies , Radiotherapy Planning, Computer-Assisted/methods , Radiotherapy, Intensity-Modulated/methods
6.
J Med Radiat Sci ; 71 Suppl 2: 19-26, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38037893

ABSTRACT

INTRODUCTION: Australia's first proton beam therapy (PBT) centre will house a fixed-beam room and two gantry rooms. As the only PBT facility in Australia for at least the short term, there is a need to efficiently allocate treatment appointments between the gantry and fixed-beam rooms. This planning study assesses the dosimetric differences between fixed-beam and gantry-based treatment plans for base of skull chordoma, one of the core indications likely to be referred for PBT in Australia. METHODS: Retrospective gantry-based and fixed-beam treatment plans were generated for five patients with base of skull chordoma. Fixed-beam plans were generated with a conventional horizontal patient positioning system. Robust intensity modulated proton therapy (IMPT) optimisation and evaluation techniques were used for both delivery systems. Plans were designed to maximise target coverage while adhering to maximum dose constraints to neighbouring critical organs at risk. RESULTS: Robust target coverage and integral dose were found to be approximately equivalent for the gantry-based and fixed-beam plans. Doses to specific organs at risk could be reduced with the gantry-based geometry; however, the gantry-based plans did not exhibit a general decrease in doses to organs at risk. CONCLUSION: A fixed-beam treatment plan was found to be non-inferior to a gantry-based treatment plan for all base of skull patients included in the current study.


Subject(s)
Chordoma , Proton Therapy , Radiotherapy, Intensity-Modulated , Humans , Chordoma/radiotherapy , Retrospective Studies , Radiotherapy Planning, Computer-Assisted/methods , Radiotherapy, Intensity-Modulated/methods , Skull Base , Radiotherapy Dosage , Organs at Risk
7.
Phys Eng Sci Med ; 46(3): 1115-1130, 2023 Sep.
Article in English | MEDLINE | ID: mdl-37249825

ABSTRACT

In high-dose-rate (HDR) prostate brachytherapy the combined effect of uncertainties cause a range of possible dose distributions deviating from the nominal plan, and which are not considered during treatment plan evaluation. This could lead to dosimetric misses for critical structures and overdosing of organs at risk. A robust evaluation method to assess the combination of uncertainties during plan evaluation is presented and demonstrated on one HDR prostate ultrasound treatment plan retrospectively. A range of uncertainty scenarios are simulated by changing six parameters in the nominal plan and calculating the corresponding dose distribution. Two methods are employed to change the parameters, a probabilistic approach using random number sampling to evaluate the likelihood of variation in dose distributions, and a combination of the most extreme possible values to access the worst-case dosimetric outcomes. One thousand probabilistic scenarios were run on the single treatment plan with 43.2% of scenarios passing seven of the eight clinical objectives. The prostate D90 had a standard deviation of 4.4%, with the worst case decreasing the dose by up to 27.2%. The urethra D10 was up to 29.3% higher than planned in the worst case. All DVH metrics in the probabilistic scenarios were found to be within acceptable clinical constraints for the plan under statistical tests for significance. The clinical significance of the results from the robust evaluation method presented on any individual treatment plan needs to be compared in the context of a historical data set that contains patient outcomes with robustness analysis data to ascertain a baseline acceptance.


Subject(s)
Brachytherapy , Prostate , Male , Humans , Radiotherapy Dosage , Uncertainty , Brachytherapy/methods , Retrospective Studies , Radiotherapy Planning, Computer-Assisted/methods
8.
Viruses ; 15(2)2023 02 15.
Article in English | MEDLINE | ID: mdl-36851755

ABSTRACT

Papaya sticky disease is caused by the association of a fusagra-like and an umbra-like virus, named papaya meleira virus (PMeV) and papaya meleira virus 2 (PMeV2), respectively. Both viral genomes are encapsidated in particles formed by the PMeV ORF1 product, which has the potential to encode a protein with 1563 amino acids (aa). However, the structural components of the viral capsid are unknown. To characterize the structural proteins of PMeV and PMeV2, virions were purified from Carica papaya latex. SDS-PAGE analysis of purified virus revealed two major proteins of ~40 kDa and ~55 kDa. Amino-terminal sequencing of the ~55 kDa protein and LC-MS/MS of purified virions indicated that this protein starts at aa 263 of the deduced ORF1 product as a result of either degradation or proteolytic processing. A yeast two-hybrid assay was used to identify Arabidopsis proteins interacting with two PMeV ORF1 product fragments (aa 321-670 and 961-1200). The 50S ribosomal protein L17 (AtRPL17) was identified as potentially associated with modulated translation-related proteins. In plant cells, AtRPL17 co-localized and interacted with the PMeV ORF1 fragments. These findings support the hypothesis that the interaction between PMeV/PMeV2 structural proteins and RPL17 is important for virus-host interactions.


Subject(s)
Capsid Proteins , Carica , Amino Acids , Capsid , Capsid Proteins/genetics , Chromatography, Liquid , Latex , Tandem Mass Spectrometry , RNA Viruses/genetics
9.
Phys Eng Sci Med ; 45(1): 125-134, 2022 Mar.
Article in English | MEDLINE | ID: mdl-35020174

ABSTRACT

In this study, we investigate whether an acceptable dosimetric plan can be obtained for a brachytherapy surface applicator designed using photogrammetry and compare the plan quality to a CT-derived applicator. The nose region of a RANDO anthropomorphic phantom was selected as the treatment site due to its high curvature. Photographs were captured using a Nikon D5600 DSLR camera and reconstructed using Agisoft Metashape while CT data was obtained using a Canon Aquillion scanner. Virtual surface applicators were designed in Blender and printed with PLA plastic. Treatment plans with a prescription dose of 3.85 Gy × 10 fractions with 100% dose to PTV on the bridge of the nose at 2 mm depth were generated separately using AcurosBV in the Varian BrachyVision TPS. PTV D98%, D90% and V100%, and OAR D0.1cc, D2cc and V50% dose metrics and dwell times were evaluated, with the applicator fit assessed by air-gap volume measurements. Both types of surface applicators were printed with minimal defects and visually fitted well to the target area. The measured air-gap volume between the photogrammetry applicator and phantom surface was 44% larger than the CT-designed applicator, with a mean air gap thickness of 3.24 and 2.88 mm, respectively. The largest difference in the dose metric observed for the PTV and OAR was the PTV V100% of - 1.27% and skin D0.1cc of - 0.28%. PTV D98% and D90% and OAR D2cc and V50% for the photogrammetry based plan were all within 0.5% of the CT based plan. Total dwell times were also within 5%. A 3D printed surface applicator for the nose was successfully constructed using photogrammetry techniques. Although it produced a larger air gap between the surface applicator and phantom surface, a clinically acceptable dose plan was created with similar PTV and OAR dose metrics to the CT-designed applicator. Additional future work is required to comprehensively evaluate its suitability in a clinically environment.


Subject(s)
Brachytherapy , Brachytherapy/methods , Photogrammetry , Printing, Three-Dimensional , Radiotherapy Dosage , Radiotherapy Planning, Computer-Assisted/methods , Tomography, X-Ray Computed/methods
10.
Rheumatology (Oxford) ; 61(8): 3351-3361, 2022 08 03.
Article in English | MEDLINE | ID: mdl-34664616

ABSTRACT

OBJECTIVES: To evaluate immunogenicity and safety of an inactivated SARS-CoV-2 vaccine in systemic autoimmune myopathies (SAMs) and the possible influence of baseline disease parameters, comorbidities and therapy on immune response. METHODS: This prospective controlled study included 53 patients with SAMs and 106 non-immunocompromised control group (CTRL). All participants received two doses of the Sinovac-CoronaVac vaccine (28-day interval). Immunogenicity was assessed by anti-SARS-CoV-2 S1/S2 IgG seroconversion (SC), anti-S1/S2 IgG geometric mean titre (GMT), factor increase GMT (FI-GMT), neutralizing antibodies (NAb) positivity, and median neutralizing activity after each vaccine dose (D0 and D28) and six weeks after the second dose (D69). Participants with pre-vaccination positive IgG serology and/or NAb and those with RT-PCR confirmed COVID-19 during the protocol were excluded from immunogenicity analysis. RESULTS: Patients and CTRL had comparable sex (P>0.99) and age (P=0.90). Immunogenicity of 37 patients and 79 CTRL-naïve participants revealed at D69, a moderate but significantly lower SC (64.9% vs 91.1%, P<0.001), GMT [7.9 (95%CI 4.7-13.2) vs 24.7 (95%CI 30.0-30.5) UA/ml, P<0.001] and frequency of NAb (51.4% vs 77.2%, P<0.001) in SAMs compared with CTRL. Median neutralizing activity was comparable in both groups [57.2% (interquartile range (IQR) 43.4-83.4) vs 63.0% (IQR 40.3-80.7), P=0.808]. Immunosuppressives were less frequently used among NAb+ patients vs NAb- patients (73.7% vs 100%, P=0.046). Type of SAMs, disease status, other drugs or comorbidities did not influence immunogenicity. Vaccine-related adverse events were mild with similar frequencies in patients and CTRL (P>0.05). CONCLUSION: Sinovac-CoronaVac is safe and has a moderate short-term immunogenicity in SAMs, but reduced compared with CTRL. We further identified that immunosuppression is associated with diminished NAb positivity. TRIAL REGISTRATION: COVID-19 CoronaVac in Patients With Autoimmune Rheumatic Diseases and HIV/AIDS (CoronavRheum), http://clinicaltrials.gov/ct2/show/NCT04754698.


Subject(s)
Autoimmune Diseases , COVID-19 Vaccines , COVID-19 , Antibodies, Neutralizing , Antibodies, Viral , Autoimmune Diseases/drug therapy , COVID-19/prevention & control , COVID-19 Vaccines/adverse effects , Humans , Immunogenicity, Vaccine , Immunoglobulin G , Muscular Diseases , Prospective Studies , SARS-CoV-2
11.
Nanotechnology ; 32(40)2021 Jul 13.
Article in English | MEDLINE | ID: mdl-34102628

ABSTRACT

Owing to many fascinating properties including high thermal and chemical stability, excellent electrical insulation, fire-retardant and antibacterial properties, hexagonal boron nitride (hBN) has emerged as a prominent 2D material for broad applications. However, the production of high quality of hBN by chemical exfoliation from its precursor is still challenging. This paper presents a high-yield (+83%), low-cost and energy-efficient wet chemical exfoliation strategy, which produces few-layers (FL, 3-6 layers) of edge-functionalized (OH) hBN nanosheets with uniform size (486 ± 51 nm). This optimized preparation is established based on a comprehensive investigation on the key exfoliation parameters such as exfoliation temperature, time and amount of the oxidant (potassium permanganate). High quality of FL-hBN was confirmed by various characterization techniques including scanning electron microscopy coupled with energy dispersive X-ray, transmission electron microscopy, Raman, Fourier transform infrared spectroscopy, X-ray diffraction and X-ray photoelectron spectroscopy analyses. The outcome of this study paves a promising pathway to effectively produce hBN through a cost-efficient exfoliation approach, which has a significant impact on industrial applications.

12.
Phys Eng Sci Med ; 44(2): 457-471, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33844156

ABSTRACT

The fabrication of brachytherapy surface moulds is considered laborious and time consuming that often result in repeated attempts due to incorrect catheter positioning or the presence of air gaps. 3-dimensional printing using low-cost and reliable materials has allowed the rapid creation of patient-specific surface mould applicators to be achieved using patient imaging data obtained via CT scan. In this study we investigate whether an alternative approach using photogrammetry techniques can improve this process and how camera settings and object texture affect the reconstructions. Two humanoid phantoms, an anthropomorphic RANDO phantom and a Laerdal Little Anne CPR training manikin were used in this study. Both were imaged using a Nikon D5600 DSLR and Nokia 3.1 smartphone camera and reconstructed using Agisoft Metashape software. CT scans of both phantoms were taken as references for comparing the photogrammetry reconstructions. Models were reconstructed from different photo sets and assessed by distance to agreement with the CT models. Both phantoms were effectively reconstructed for most experiments. Increasing the number of photos used produced the better reconstructions while in general, reconstructions using video data were poor. The two phantoms were reconstructed at a similar quality. Background light that caused undesirable reflections significantly reduced reconstruction quality. Applying a non-reflective tape to the affected regions provided a suitable method for reducing their effects. Photogrammetry techniques were effectively able to reconstruct 3-dimensional models of both phantom. The camera settings and lighting did have a profound effect on the reconstruction quality and should be chosen appropriately depending on the scene.


Subject(s)
Brachytherapy , Humans , Phantoms, Imaging , Photogrammetry , Printing, Three-Dimensional , Tomography, X-Ray Computed
13.
Acta Oncol ; 60(3): 300-304, 2021 Mar.
Article in English | MEDLINE | ID: mdl-33345660

ABSTRACT

BACKGROUND AND PURPOSE: Proton therapy has been proposed as a technique to improve the long-term quality of life of breast cancer patients. This is due to its ability to reduce the dose to healthy tissue compared to conventional X-ray therapy. The aim of this study was to investigate the risk of secondary carcinogenesis due to proton therapy compared to hybrid IMRT for breast treatments. MATERIAL AND METHODS: In this study, the Pinnacle treatment planning system was used to simulate treatment plans for 15 female left-sided whole breast cancer patients with deep inspiration breath hold scans. Two treatment plans were generated for each patient: hybrid intensity modulated radiotherapy (h-IMRT) and intensity modulated proton therapy (IMPT). Using the dose-volume histograms (DVHs) from these plans, the mean lifetime attributed risk (LAR) for both lungs and the contralateral breast were evaluated using the BEIR VII and Schneider full risk models. RESULTS: The results from both risk models show lower LAR estimates for the IMPT treatment plan compared to the h-IMRT treatment plan. This result was observed for all organs of interest and was consistent amongst the two separate risk models. For both treatment plans, the organs from most to least at risk were: ipsilateral lung, contralateral breast, and contralateral lung. In all cases, the risk estimated via the BEIR VII model was higher that the Schneider full risk model. CONCLUSION: The use of proton therapy for breast treatments leads to reduced risk estimates for secondary carcinogenesis. Therefore, proton therapy shows promise in improving the long term treatment outcome of breast patients.


Subject(s)
Breast Neoplasms , Neoplasms, Second Primary , Proton Therapy , Radiotherapy, Intensity-Modulated , Unilateral Breast Neoplasms , Breast Neoplasms/radiotherapy , Female , Humans , Neoplasms, Second Primary/epidemiology , Neoplasms, Second Primary/etiology , Organs at Risk , Proton Therapy/adverse effects , Quality of Life , Radiotherapy Dosage , Radiotherapy Planning, Computer-Assisted , Radiotherapy, Intensity-Modulated/adverse effects , Unilateral Breast Neoplasms/radiotherapy
14.
Arch Virol ; 165(5): 1211-1214, 2020 May.
Article in English | MEDLINE | ID: mdl-32170392

ABSTRACT

Papaya sticky disease (PSD), which can destroy orchards, was first attributed to papaya meleira virus (PMeV). However, the discovery of papaya meleira virus 2 (PMeV2) associated with PSD plants impose the need to detect this viral complex. We developed a multiplex RT-PCR (mPCR) technique capable of detecting two viruses in a single assay from pre-flowering plant samples, which is a useful tool for early diagnosis of PSD. We also determined the limit of detection (LOD) using asymmetric plasmid dilutions of both PMeV and PMeV2, which revealed that a higher titer of one virus prevents detection of the other. Thus, this technique is an alternative method for detecting PMeV and PMeV2 in a single reaction.


Subject(s)
Carica/virology , Multiplex Polymerase Chain Reaction/methods , Plant Diseases/virology , Reverse Transcriptase Polymerase Chain Reaction/methods , Totiviridae/isolation & purification , Molecular Diagnostic Techniques/methods , Totiviridae/classification , Totiviridae/genetics
15.
Med Phys ; 47(2): 393-403, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31778235

ABSTRACT

PURPOSE: Protons and heavy ions are considered to be ideal particles for use in external beam radiotherapy due to the superior properties of the dose distribution. While a photon (x-ray) beam delivers considerable dose to healthy tissues around the tumor, a proton beam that is delivered with sufficient energies has: a low entrance dose (the dose in front of the tumor); a high-dose region within the tumor, known as the Bragg peak; and, no exit dose beyond the tumor. Proton therapy is the next major step in advancing radiotherapy treatment. The purpose of this project was to adapt an existing radioisotope production cyclotron, a General Electric (GE) PETtrace, to enable radiobiological studies using proton beams. During routine use the PETtrace delivers 16.5 MeV protons to target with beam currents in the range of 10-100 µA resulting in dose rates in the order of kGy/s. To achieve the aim of the project the dose rate had to be reduced to the Gy/min range, without attenuating the proton energy below 5 MeV. This paper covers the design, construction and validation of the beam port. METHODS: Monte Carlo simulations were performed, using GEANT4, SRIM and PACE4 to design the beam port and optimize its components. Once the beam port was fabricated, validation experiments were performed using EBT3 and HD-V2 Gafchromic™ films, and a Keithley 6485 picoampere meter. RESULTS AND CONCLUSION: The external beam port was successfully modeled, designed and fabricated. By using a 0.25 mm thick gold foil and a brass pin-hole collimator the beam was spread from a narrow full beam diameter of 10 mm to a wide beam with a 5% flatness area in the center of the beam that had a diameter of ~20 mm. In using this system the dose rate was reduced from kGy/s to ~30 Gy/min.


Subject(s)
Neoplasms/radiotherapy , Proton Therapy/instrumentation , Proton Therapy/methods , Computer Simulation , Cyclotrons , Dose-Response Relationship, Radiation , Electricity , Equipment Design , Humans , Monte Carlo Method , Protons , Radiobiology , Reproducibility of Results
16.
Phys Med ; 65: 167-171, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31494370

ABSTRACT

The purpose of this study was to investigate the potential of real-time optically stimulated luminescence (rtOSL) measurements of a beryllium oxide (BeO) ceramic fibre-coupled luminescence dosimetry system. By pulsing the stimulation laser during the exposure to ionizing radiation, an rtOSL dose-rate measurement can be obtained which could be stem effect free. A portable rtOSL BeO ceramic fibre-coupled dosimetry system is presented and characterized using a constant dose-rate superficial 140 kVp X-ray beam. The rtOSL was measured for dose-rates between 0.29 and 3.88 Gy/min, controlled by varying the source to surface distance. After correcting for OSL decay during the exposure, a linear dose-rate response of the change in rtOSL (ΔrtOSL) was observed. The ΔrtOSL was also observed to be stem effect free.


Subject(s)
Beryllium , Optically Stimulated Luminescence Dosimetry , Radiation Dosage , Time Factors , X-Rays
17.
Australas Phys Eng Sci Med ; 42(3): 863-869, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31396857

ABSTRACT

Respiratory gated treatments are now common in order to reduce tumour motion uncertainties due to breathing. One issue associated with gated treatments is the time delay between the gating system and the linear accelerator. In this study we develop and characterise an affordable phantom to be used in routine and patient specific quality assurance (QA) of the Varian Real-Time Position Management™ (RPM) system. A photodiode has been incorporated into the phantom in order to estimate the time delay. A commercial Quasar phantom was customised to incorporate two stepper motors which independently control an anterior-posterior abdomen/thorax moving plate, and an inferior-superior moving lung insert. A photodiode placed in the path of the radiation is used to measure when beam on/off occurs. Two Arduino microcontroller boards have been utilised to control the motors, read the photodiode and write to an SD card. The measured beam on/off, correlated to the known positions of the phantom is compared to the gate window for RPM. The time delay was measured for sinusoidal movements with a period of 7.50 s and 3.75 s, and for three patient breathing traces. For the sinusoidal movements, time delays of 150 ± 34 ms and 39 ± 34 ms were measured, for 7.50 s and 3.75 s periods, respectively. In the case of the patients' breathing traces time delays of 135 ± 26 ms, 137 ± 34 ms and 129 ± 28 ms were measured. An affordable motion phantom has been developed for routine and patient specific QA of respiratory gating systems. It is capable of reproducing a patient's breathing waveform and performing time delay measurements with a photodiode. Results indicate a time delay of the order of 0.1-0.2 s for the RPM system.


Subject(s)
Particle Accelerators , Phantoms, Imaging , Respiration , Algorithms , Humans , Movement , Software , Time Factors
18.
Phys Med ; 65: 15-20, 2019 Sep.
Article in English | MEDLINE | ID: mdl-31430581

ABSTRACT

An investigation into the response of optical fibres to 16.5 MeV protons is presented here. A silica and a poly(methyl methacrylate) (PMMA) optical fibre was exposed to 16.5 MeV protons from a GE PETtrace cyclotron. The optical fibres were exposed to beam currents of 30nA - 270nA and the emission spectrum analysed. The silica fibre was the most sensitive and had two main peaks at 460 nm and 650 nm. The ratio between the peaks was observed to increase as irradiation of the fibres continued, where the 460 nm peak increased at a rate >4 times the 650 nm peak. The rate of increase of the ratio between the peaks was observed to be constant at a constant target current and linear with target current. In the case of the PMMA fibre, significant spectral changes were observed during the exposure to 16.5 MeV protons. A simple method for estimating the effect of photodarkening and activation is presented here and indicated that the changes in the spectrum for the PMMA fibres may be due to photodarkening and activation.


Subject(s)
Optical Fibers , Polymethyl Methacrylate , Protons , Silicon Dioxide , Spectrum Analysis
19.
Brachytherapy ; 18(5): 689-700, 2019.
Article in English | MEDLINE | ID: mdl-31230942

ABSTRACT

PURPOSE: We propose a novel method of designing surface mold brachytherapy applicators using optical photogrammetry. The accuracy of this technique for the purpose of 3D-printing surface mold brachytherapy applicators is investigated. METHODS AND MATERIALS: Photogrammetry was used to generate a 3D model of a patient's right arm. The geometric accuracy of the model was evaluated against CT in terms of volume, surface area, and the Hausdorff distance. A surface mold applicator was then 3D printed using this reconstructed model. The accuracy was evaluated by analyzing the displacement and air-gap volumes between the applicator and plaster cast on a CT image. This technique was subsequently applied to generate a 3D-printed applicator of the author's hand directly, as a proof of principle, using only photographic images. RESULTS: The volume and surface area of the model were within 0.1% and 2.6% of the CT-obtained values, respectively. Using the Hausdorff distance metric, it was determined that 93% of the visible vertices present in the CT-derived model had a matching vertex on the photogrammetry-derived model within 1 mm, indicating a high level of similarity. The maximum displacement between the plaster cast of the patient's arm and the photo-derived 3D-printed applicator was 1.2 mm with a total air-gap volume of approximately 0.05 cm3. CONCLUSIONS: Photogrammetry has been applied to the task of generating 3D-printed brachytherapy surface mold applicators. The current work demonstrates the feasibility and accuracy of this technique and how it may be incorporated into a 3D-printing brachytherapy workflow.


Subject(s)
Brachytherapy/instrumentation , Brachytherapy/methods , Photogrammetry/methods , Printing, Three-Dimensional , Arm/anatomy & histology , Arm/diagnostic imaging , Casts, Surgical , Computer-Aided Design , Equipment Design , Feasibility Studies , Humans , Imaging, Three-Dimensional/methods , Models, Anatomic , Radiotherapy Dosage , Radiotherapy Planning, Computer-Assisted/methods , Tomography, X-Ray Computed/methods
20.
Lancet Glob Health ; 7(1): e68-e80, 2019 Jan.
Article in English | MEDLINE | ID: mdl-30554764

ABSTRACT

BACKGROUND: Indigenous peoples worldwide carry a disproportionate tuberculosis burden. There is an increasing awareness of the effect of social determinants and proximate determinants such as alcohol use, overcrowding, type 1 and type 2 diabetes, substance misuse, HIV, food insecurity and malnutrition, and smoking on the burden of tuberculosis. We aimed to understand the potential contribution of such determinants to tuberculosis in Indigenous peoples and to document steps taken to address them. METHODS: We did a systematic review using seven databases (MEDLINE, Embase, CINAHL, Global Health, BIOSIS Previews, Web of Science, and the Cochrane Library). We identified English language articles published from Jan 1, 1980, to Dec 20, 2017, reporting the prevalence of proximate determinants of tuberculosis and preventive programmes targeting these determinants in Indigenous communities worldwide. We included any randomised controlled trials, controlled studies, cohort studies, cross-sectional studies, case reports, and qualitative research. Exclusion criteria were articles in languages other than English, full text not available, population was not Indigenous, focused exclusively on children or older people, and studies that focused on pharmacological interventions. FINDINGS: Of 34 255 articles identified, 475 were eligible for inclusion. Most studies confirmed a higher prevalence of proximate determinants in Indigenous communities than in the general population. Diabetes was more frequent in Indigenous communities within high-income countries versus in low-income countries. The prevalence of alcohol use was generally similar to that among non-Indigenous groups, although patterns of drinking often differed. Smoking prevalence and smokeless tobacco consumption were commonly higher in Indigenous groups than in non-Indigenous groups. Food insecurity was highly prevalent in most Indigenous communities evaluated. Substance use was more frequent in Indigenous inhabitants of high-income countries than of low-income countries, with wide variation across Indigenous communities. The literature pertaining to HIV, crowding, and housing conditions among Indigenous peoples was too scant to draw firm conclusions. Preventive programmes that are culturally appropriate targeting these determinants appear feasible, although their effectiveness is largely unproven. INTERPRETATION: Indigenous peoples were generally reported to have a higher prevalence of several proximate determinants of tuberculosis than non-Indigenous peoples, with wide variation across Indigenous communities. These findings emphasise the need for community-led, culturally appropriate strategies to address smoking, food insecurity, and diabetes in Indigenous populations as important public health goals in their own right, and also to reduce the burden of tuberculosis. FUNDING: Canadian Institutes of Health Research.


Subject(s)
Global Health/statistics & numerical data , Population Groups/statistics & numerical data , Tuberculosis/epidemiology , Humans , Randomized Controlled Trials as Topic , Risk Factors
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