ABSTRACT
The Molecular Weevil Identification project (MWI) studies the systematics of Western Palearctic weevils (superfamily Curculionoidea) in an integrative taxonomic approach of DNA barcoding, morphology and ecology. This barcode release provides almost 3600 curated CO1 sequences linked to morphological vouchers in about 1300 weevil species. The dataset is presented in statistical distance tables and as a Neighbour-Joining tree. Bayesian Inference trees are computed for the subfamilies Cryptorhynchinae, Apioninae and Ceutorhynchinae. Altogether, 18 unresolved taxonomic issues are discussed. A new barcode primer set is presented. Finally, we establish group-specific genetic distances for many weevil genera to serve as a tool in species delineation. These values are statistically based on distances between "good species" and their congeners. With this morphologically calibrated approach, we could resolve most alpha-taxonomic questions within the MWI project.
ABSTRACT
The gastrointestinal tract is covered by a single layer of epithelial cells that, together with the mucus layers, protect the underlying tissue from microbial invasion. The epithelium has one of the highest turnover rates in the body. Using stable isotope labeling, high-resolution mass spectrometry, and computational analysis, we report a comprehensive dataset of the turnover of more than 3,000 and the expression of more than 5,000 intestinal epithelial cell proteins, analyzed under conventional and germ-free conditions across five different segments in mouse intestine. The median protein half-life is shorter in the small intestine than in the colon. Differences in protein turnover rates along the intestinal tract can be explained by distinct physiological and immune-related functions between the small and large intestine. An absence of microbiota results in an approximately 1 day longer protein half-life in germ-free animals.
Subject(s)
Epithelial Cells/metabolism , Gastrointestinal Tract/physiology , Microbiota/physiology , Mucus/metabolism , Protein Transport/physiology , Proteomics/methods , Animals , Humans , Mice , Mucus/cytologyABSTRACT
The species of the genus Smicronyx sensu lato (Curculionidae, Curculioninae) occurring in Israel are reviewed. A total of seven species is recorded. Two species are newly recorded for the country (S. pauperculus Wollaston, 1864 and S. albosquamosus Wollaston, 1854), and two new species are described: S. jordanicus Haran and S. longitarsis Haran. A key to species, diagnosis of the new species, new biological and distribution data together with line illustrations of some characters, including male genitalia, and colour photographs of the habitus are provided.
Subject(s)
Coleoptera , Animal Distribution , Animals , Genitalia, Male , Israel , Male , WeevilsABSTRACT
The distal colon functions as a bioreactor and harbors an enormous amount of bacteria in a mutualistic relationship with the host. The microbiota have to be kept at a safe distance to prevent inflammation, something that is achieved by a dense inner mucus layer that lines the epithelial cells. The large polymeric nets made up by the heavily O-glycosylated MUC2 mucin forms this physical barrier. Proteomic analyses of mucus have identified the lectin-like protein ZG16 (zymogen granulae protein 16) as an abundant mucus component. To elucidate the function of ZG16, we generated recombinant ZG16 and studied Zg16-/- mice. ZG16 bound to and aggregated Gram-positive bacteria via binding to the bacterial cell wall peptidoglycan. Zg16-/- mice have a distal colon mucus layer with normal thickness, but with bacteria closer to the epithelium. Using distal colon explants mounted in a horizontal perfusion chamber we demonstrated that treatment of bacteria with recombinant ZG16 hindered bacterial penetration into the mucus. The inner colon mucus of Zg16-/- animals had a higher load of Gram-positive bacteria and showed bacteria with higher motility in the mucus close to the host epithelium compared with cohoused littermate Zg16+/+ The more penetrable Zg16-/- mucus allowed Gram-positive bacteria to translocate to systemic tissues. Viable bacteria were found in spleen and were associated with increased abdominal fat pad mass in Zg16-/- animals. The function of ZG16 reveals a mechanism for keeping bacteria further away from the host colon epithelium.
Subject(s)
Gram-Positive Bacteria/genetics , Lectins/genetics , Membrane Proteins/genetics , Proteomics , Animals , Colon/metabolism , Colon/microbiology , Digestive System/metabolism , Epithelial Cells/metabolism , Epithelial Cells/microbiology , Glycosylation , Gram-Positive Bacteria/metabolism , Host-Pathogen Interactions/genetics , Lectins/metabolism , Mice , Mice, Knockout , Mucus/metabolism , Mucus/microbiology , Symbiosis/geneticsABSTRACT
There has been considerable interest in the use of antimicrobial peptides (AMPs) as antimicrobial agents for the treatment of many conditions, including cystic fibrosis (CF). The challenging conditions of the CF patient lung require robust AMPs that are active in an environment of high proteolytic activity but that also have low cytotoxicity and immunogenicity. Previously, we developed prodrugs of AMPs that limited the cytotoxic effects of AMP treatment by rendering the antimicrobial activity dependent on the host enzyme neutrophil elastase (NE). However, cytotoxicity remained an issue. Here, we describe the further optimization of the AMP prodrug (pro-AMP) model for CF to produce pro-WMR, a peptide with greatly reduced cytotoxicity (50% inhibitory concentration against CFBE41o- cells, >300 µM) compared to that of the previous group of pro-AMPs. The bactericidal activity of pro-WMR was increased in NE-rich bronchoalveolar lavage (BAL) fluid from CF patients (range, 8.4% ± 6.9% alone to 91.5% ± 5.8% with BAL fluid; P = 0.0004), an activity differential greater than that of previous pro-AMPs. In a murine model of lung delivery, the pro-AMP modification reduced host toxicity, with pro-WMR being less toxic than the active peptide. Previously, host toxicity issues have hampered the clinical application of AMPs. However, the development of application-specific AMPs with modifications that minimize toxicity similar to those described here can significantly advance their potential use in patients. The combination of this prodrug strategy with a highly active AMP has the potential to produce new therapeutics for the challenging conditions of the CF patient lung.
Subject(s)
Anti-Infective Agents/metabolism , Anti-Infective Agents/toxicity , Cystic Fibrosis/drug therapy , Cystic Fibrosis/metabolism , Prodrugs/metabolism , Prodrugs/toxicity , Animals , Anti-Infective Agents/pharmacology , Antimicrobial Cationic Peptides/metabolism , Antimicrobial Cationic Peptides/pharmacology , Antimicrobial Cationic Peptides/toxicity , Bronchoalveolar Lavage Fluid/chemistry , Cell Line , Humans , Mice , Mice, Inbred C57BL , Microbial Sensitivity Tests , Neutrophils/drug effects , Neutrophils/metabolism , Pseudomonas aeruginosa/drug effects , Spectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationABSTRACT
The intestinal mucus layer provides a barrier limiting bacterial contact with the underlying epithelium. Mucus structure is shaped by intestinal location and the microbiota. To understand how commensals modulate gut mucus, we examined mucus properties under germ-free (GF) conditions and during microbial colonization. Although the colon mucus organization of GF mice was similar to that of conventionally raised (Convr) mice, the GF inner mucus layer was penetrable to bacteria-sized beads. During colonization, in which GF mice were gavaged with Convr microbiota, the small intestine mucus required 5 weeks to be normally detached and colonic inner mucus 6 weeks to become impenetrable. The composition of the small intestinal microbiota during colonization was similar to Convr donors until 3 weeks, when Bacteroides increased, Firmicutes decreased, and segmented filamentous bacteria became undetectable. These findings highlight the dynamics of mucus layer development and indicate that studies of mature microbe-mucus interactions should be conducted weeks after colonization.
Subject(s)
Bacterial Infections/microbiology , Bacteroides/growth & development , Firmicutes/growth & development , Intestinal Mucosa/microbiology , Animals , Gastrointestinal Microbiome , Germ-Free Life , Mice , Mucin-2/metabolismABSTRACT
Molecular systematics and morphological study of the monophyletic weevil genus Acalles Schoenherr, 1825 are presented. Based on the mitochondrial CO1 barcoding gene and 16S ribosomal RNA gene, we discuss three difficult species complexes in the framework of a molecular phylogenetic reconstruction of 37 of 47 Western Palaearctic Acalles species or subspecies: the A. echinatus, A. maraoensis and A. sierrae complexes. Two results are given: 1. An exclusive focus on morphological, exoskeletal methods reach their limits in the case of many cryptic Cryptorhynchinae. In these cases molecular analysis is indispensable to resolve species level questions. 2. By using a combination of phenotypic and genotypic characters it is not only possible to ascertain phylogenetic relationships, but also to uncover new morphological, non-intraspecifical characteristics. Digital photography with image stacking makes this possible: for the first time we present photo key for Acalles species, a reliable, less costly and quick method for identification alongside DNA barcoding. The following taxonomic changes are given: Coloracalles edoughensis Desbrochers, 1892 comb. nov. (formerly Acalles edoughensis) from North Africa and Spain change to Coloracalles Astrin & Stüben, 2008 and Pseudodichromacalles xerampelinus Wollaston, 1864 comb. nov. from the Canarian Island Tenerife, Acalles bazaensis Stüben, 2001 syn. nov. is a junior synonym of Acalles sierrae H. Brisout, 1865. Two new species of Acalles s. str. , A. iblanensis Stüben sp. nov. from Morocco and A. vorsti Stüben sp. nov. from Spain (Mallorca), and a new species of the subgenus Origoacalles Stüben & Astrin 2010, A. granulimaculosus Stüben sp. nov. from La Gomera, are described. Acalles temperei Péricart, 1987 stat. nov. is a subspecies of A. parvulus Boheman, 1837. A catalogue of all 43 (+4 incertae sedis) species of Acalles is presented. Finally and for the first time we compare 9 of 12 known North American so-called "Acalles" species with the Western Palaearctic species of Acalles surrounding the type species Curculio camelus Fabricius, 1792. The morphological and molecular analysis for the New World Acalles show that none of the species from the United States actually belong to the genus Acalles or one of the other genera of Western Palaearctic Cryptorhynchinae. There is one exception: Acalles costifer Le Conte, 1884, is transferred to the phylogenetically basal genus Acallocrates Reitter, 1913 as Acallocrates costifer (LeConte, 1884) comb. nov.
Subject(s)
Weevils/anatomy & histology , Weevils/classification , Animal Distribution , Animal Structures/anatomy & histology , Animal Structures/growth & development , Animals , Body Size , Female , Male , Organ Size , RNA, Ribosomal, 16S/genetics , Weevils/genetics , Weevils/growth & developmentABSTRACT
Two C57BL/6 mice colonies maintained in two rooms of the same specific pathogen-free (SPF) facility were found to have different gut microbiota and a mucus phenotype that was specific for each colony. The thickness and growth of the colon mucus were similar in the two colonies. However, one colony had mucus that was impenetrable to bacteria or beads the size of bacteria-which is comparable to what we observed in free-living wild mice-whereas the other colony had an inner mucus layer penetrable to bacteria and beads. The different properties of the mucus depended on the microbiota, as they were transmissible by transfer of caecal microbiota to germ-free mice. Mice with an impenetrable mucus layer had increased amounts of Erysipelotrichi, whereas mice with a penetrable mucus layer had higher levels of Proteobacteria and TM7 bacteria in the distal colon mucus. Thus, our study shows that bacteria and their community structure affect mucus barrier properties in ways that can have implications for health and disease. It also highlights that genetically identical animals housed in the same facility can have rather distinct microbiotas and barrier structures.
Subject(s)
Intestinal Mucosa/cytology , Intestinal Mucosa/microbiology , Animals , Female , Mice , Mice, Inbred C57BL , Microbiota/physiology , Mucus/cytology , Mucus/microbiology , RNA, Ribosomal, 16S/genetics , Specific Pathogen-Free OrganismsABSTRACT
The mucus that covers and protects the epithelium of the intestine is built around its major structural component, the gel-forming MUC2 mucin. The gel-forming mucins have traditionally been assumed to be secreted as nonattached. The colon has a two-layered mucus system where the inner mucus is attached to the epithelium, whereas the small intestine normally has a nonattached mucus. However, the mucus of the small intestine of meprin ß-deficient mice was now found to be attached. Meprin ß is an endogenous zinc-dependent metalloprotease now shown to cleave the N-terminal region of the MUC2 mucin at two specific sites. When recombinant meprin ß was added to the attached mucus of meprin ß-deficient mice, the mucus was detached from the epithelium. Similar to meprin ß-deficient mice, germ-free mice have attached mucus as they did not shed the membrane-anchored meprin ß into the luminal mucus. The ileal mucus of cystic fibrosis (CF) mice with a nonfunctional cystic fibrosis transmembrane conductance regulator (CFTR) channel was recently shown to be attached to the epithelium. Addition of recombinant meprin ß to CF mucus did not release the mucus, but further addition of bicarbonate rendered the CF mucus normal, suggesting that MUC2 unfolding exposed the meprin ß cleavage sites. Mucus is thus secreted attached to the goblet cells and requires an enzyme, meprin ß in the small intestine, to be detached and released into the intestinal lumen. This process regulates mucus properties, can be triggered by bacterial contact, and is nonfunctional in CF due to poor mucin unfolding.
Subject(s)
Cystic Fibrosis Transmembrane Conductance Regulator/metabolism , Intestine, Small/metabolism , Metalloendopeptidases/metabolism , Mucin-2/metabolism , Mucus/metabolism , Amino Acid Sequence , Animals , Binding Sites , Cystic Fibrosis Transmembrane Conductance Regulator/chemistry , Cystic Fibrosis Transmembrane Conductance Regulator/genetics , Germ-Free Life/physiology , Intestine, Small/microbiology , Metalloendopeptidases/deficiency , Metalloendopeptidases/genetics , Mice , Mice, Inbred C57BL , Mice, Inbred CFTR , Mice, Knockout , Molecular Sequence Data , Mucin-2/chemistry , Mucin-2/genetics , Protein Folding , Protein Structure, Tertiary , Recombinant Proteins/genetics , Recombinant Proteins/metabolism , Sequence Homology, Amino AcidABSTRACT
The gastrointestinal tract is covered by mucus that has different properties in the stomach, small intestine, and colon. The large highly glycosylated gel-forming mucins MUC2 and MUC5AC are the major components of the mucus in the intestine and stomach, respectively. In the small intestine, mucus limits the number of bacteria that can reach the epithelium and the Peyer's patches. In the large intestine, the inner mucus layer separates the commensal bacteria from the host epithelium. The outer colonic mucus layer is the natural habitat for the commensal bacteria. The intestinal goblet cells secrete not only the MUC2 mucin but also a number of typical mucus components: CLCA1, FCGBP, AGR2, ZG16, and TFF3. The goblet cells have recently been shown to have a novel gate-keeping role for the presentation of oral antigens to the immune system. Goblet cells deliver small intestinal luminal material to the lamina propria dendritic cells of the tolerogenic CD103(+) type. In addition to the gel-forming mucins, the transmembrane mucins MUC3, MUC12, and MUC17 form the enterocyte glycocalyx that can reach about a micrometer out from the brush border. The MUC17 mucin can shuttle from a surface to an intracellular vesicle localization, suggesting that enterocytes might control and report epithelial microbial challenge. There is communication not only from the epithelial cells to the immune system but also in the opposite direction. One example of this is IL10 that can affect and improve the properties of the inner colonic mucus layer. The mucus and epithelial cells of the gastrointestinal tract are the primary gate keepers and controllers of bacterial interactions with the host immune system, but our understanding of this relationship is still in its infancy.
Subject(s)
Enterocytes/physiology , Gastrointestinal Tract/immunology , Goblet Cells/physiology , Mucins/physiology , Mucous Membrane/immunology , Mucus/physiology , Animals , Gastrointestinal Tract/metabolism , Gastrointestinal Tract/microbiology , Humans , Immune System , Mucous Membrane/metabolism , Mucous Membrane/microbiology , Mucus/chemistry , Mucus/microbiology , Peyer's Patches/immunologyABSTRACT
The mucus that protects the surface of the gastrointestinal tract is rich in specialized O-glycoproteins called mucins, but little is known about other mucus proteins or their variability along the gastrointestinal tract. To ensure that only mucus was analyzed, we combined collection from explant tissues mounted in perfusion chambers, liquid sample preparation, single-shot mass spectrometry, and specific bioinformatics tools, to characterize the proteome of the murine mucus from stomach to distal colon. With our approach, we identified â¼1,300 proteins in the mucus. We found no differences in the protein composition or abundance between sexes, but there were clear differences in mucus along the tract. Noticeably, mucus from duodenum showed similarities to the stomach, probably reflecting the normal distal transport. Qualitatively, there were, however, fewer differences than might had been anticipated, suggesting a relatively stable core proteome (â¼80% of the total proteins identified). Quantitatively, we found significant differences (â¼40% of the proteins) that could reflect mucus specialization throughout the gastrointestinal tract. Hierarchical clustering pinpointed a number of such proteins that correlated with Muc2 (e.g., Clca1, Zg16, Klk1). This study provides a deeper knowledge of the gastrointestinal mucus proteome that will be important in further understanding this poorly studied mucosal protection system.
Subject(s)
Colon/metabolism , Gastric Mucosa/metabolism , Intestinal Mucosa/metabolism , Intestine, Small/metabolism , Mucin 5AC/metabolism , Mucin-2/metabolism , Proteomics , Animals , Biotinylation , Chromatography, High Pressure Liquid , Chromatography, Reverse-Phase , Cluster Analysis , Female , Male , Mice , Mice, Inbred C57BL , Mucus/metabolism , Proteomics/methods , Spectrometry, Mass, Electrospray Ionization , Tandem Mass SpectrometryABSTRACT
Colon has been shown to have a two-layered mucus system where the inner layer is devoid of bacteria. However, a complete overview of the mouse gastrointestinal mucus system is lacking. We now characterize mucus release, thickness, growth over time, adhesive properties, and penetrability to fluorescent beads from stomach to distal colon. Colon displayed spontaneous mucus release and all regions released mucus in response to carbachol and PGE2, except the distal colon and domes of Peyer's patches. Stomach and colon had an inner mucus layer that was adherent to the epithelium. In contrast, the small intestine and Peyer's patches had a single mucus layer that was easily aspirated. The inner mucus layer of the distal colon was not penetrable to beads the size of bacteria and the inner layer of the proximal colon was only partly penetrable. In contrast, the inner mucus layer of stomach was fully penetrable, as was the small intestinal mucus. This suggests a functional organization of the intestinal mucus system, where the small intestine has loose and penetrable mucus that may allow easy penetration of nutrients, in contrast to the stomach, where the mucus provides physical protection, and the colon, where the mucus separates bacteria from the epithelium. This knowledge of the mucus system and its organization improves our understanding of the gastrointestinal tract physiology.
Subject(s)
Colon/metabolism , Gastric Mucosa/metabolism , Intestinal Mucosa/metabolism , Intestine, Small/metabolism , Mucus/metabolism , Peyer's Patches/metabolism , Adhesiveness , Animals , Carbachol/pharmacology , Colon/drug effects , Colon/microbiology , Dinoprostone/pharmacology , Female , Fluorescent Dyes/metabolism , Gastric Mucosa/drug effects , Gastric Mucosa/microbiology , Intestinal Absorption , Intestinal Mucosa/drug effects , Intestinal Mucosa/microbiology , Intestine, Small/drug effects , Intestine, Small/microbiology , Male , Mice , Mice, Inbred C57BL , Microscopy, Confocal , Microscopy, Video , Mucus/microbiology , Permeability , Peyer's Patches/drug effects , Time FactorsABSTRACT
A molecular phylogeny of the western Palearctic weevil genus Dichromacalles Stuben, 1998, is presented, combining two mitochondrial genes, COI and 16S, and the nuclear gene 28S in a Bayesian analysis of up to 1528 combined nucleotide positions. Based on this data we point out the putative ancestor of the currently known extant Dichromacalles species that initiated the unique radiation within the species of the formerly Acalles s.l. on the Canary Islands around 10 to 20 million years ago. Where morphology reaches its limits in species differentiation, molecular analysis can provide deeper insight. By combining morphology and molecular biology into an integrative taxonomy, new characters can be found, making phenotypic descriptions easier. Using this integrative taxonomy background, the new species Dichromacalles algecirasensis Stuben (Spain: Cadiz) is described here and D. lentisci (Chevrolat, 1861) is transferred into the subgenus Balcanacalles Stuben & Behne, 1998 following a molecular phylogenetic reconstruction. A catalogue of all 12 species of Dichromacalles is given and a key is presented, combined with image stackings of the habitus and aedeagus for all species.
Subject(s)
Weevils/classification , Weevils/genetics , Animal Distribution , Animals , DNA/genetics , Phylogeny , Spain , Species Specificity , Weevils/anatomy & histologyABSTRACT
Cathepsin K has been shown to exhibit antimicrobial and anti-inflammatory activities in the mouse colon. To further elucidate its role, we used Ctsk-/- mice and demonstrated that the absence of cathepsin K was accompanied by elevated protein levels of related cysteine cathepsins (cathepsins B, L, and X) in the colon. In principle, such changes could result in altered subcellular localization; however, the trafficking of cysteine cathepsins was not affected in the colon of Ctsk-/- mice. However, cathepsin K deficiency affected the extracellular matrix constituents, as higher amounts of collagen IV and laminin were observed. Moreover, the localization pattern of the intercellular junction proteins E-cadherin and occludin was altered in the colon of Ctsk-/- mice, suggesting potential impairment of the barrier function. Thus, we used an ex vivo method for assessing the mucus layers and showed that the absence of cathepsin K had no influence on mucus organization and growth. The data of this study support the notion that cathepsin K contributes to intestinal homeostasis and tissue architecture, but the lack of cathepsin K activity is not expected to affect the mucus-depending barrier functions of the mouse colon. These results are important with regard to oral administration of cathepsin K inhibitors that are currently under investigation in clinical trials.
Subject(s)
Cathepsin K/genetics , Colon/metabolism , Extracellular Matrix/metabolism , Intercellular Junctions/metabolism , Intestinal Mucosa/metabolism , Animals , Cadherins/analysis , Cadherins/metabolism , Cathepsin B/metabolism , Cathepsin K/metabolism , Cathepsin L/metabolism , Colon/ultrastructure , Gene Deletion , Intercellular Junctions/ultrastructure , Intestinal Mucosa/ultrastructure , Male , Mice , Mice, Inbred C57BL , Occludin/analysis , Occludin/metabolism , ProteolysisABSTRACT
The colon mucus layers minimize the contact between the luminal flora and the epithelial cells, and defects in this barrier may lead to colonic inflammation. We now describe an ex vivo method for analysis of mucus properties in human colon and mouse small and large intestine. Intestinal explants were mounted in horizontal perfusion chambers. The mucus surface was visualized by adding charcoal particles on the apical side, and mucus thickness was measured using a micropipette. Mucus thickness, adhesion, and growth rate were recorded for 1 h. In mouse and human colon, the ability of the mucus to act as a barrier to beads the size of bacteria was also evaluated. Tissue viability was monitored by transepithelial potential difference. In mouse ileum, the mucus could be removed by gentle aspiration, whereas in colon â¼40 µm of the mucus remained attached to the epithelial surface. Both mouse and human colon had an inner mucus layer that was not penetrated by the fluorescent beads. Spontaneous mucus growth was observed in human (240 µm/h) and mouse (100 µm/h) colon but not in mouse ileum. In contrast, stimulation with carbachol induced a higher mucus secretion in ileum than colon (mouse ileum: Δ200 µm, mouse colon: Δ130 µm, human colon: Δ140 µm). In conclusion, while retaining key properties from the mucus system in vivo, this setup also allows for studies of the highly dynamic mucus system under well-controlled conditions.
Subject(s)
Colon/physiology , Ileum/physiology , Intestinal Mucosa/physiology , Mucus/physiology , Animals , Colon/anatomy & histology , Colon/pathology , Epithelial Cells/microbiology , Epithelial Cells/pathology , Humans , Ileum/anatomy & histology , Intestinal Mucosa/anatomy & histology , Intestinal Mucosa/pathology , Mice , Mucus/cytology , Mucus/microbiologyABSTRACT
In discussions on intestinal protection, the protective capacity of mucus has not been very much considered. The progress in the last years in understanding the molecular nature of mucins, the main building blocks of mucus, has, however, changed this. The intestinal enterocytes have their apical surfaces covered by transmembrane mucins and the whole intestinal surface is further covered by mucus, built around the gel-forming mucin MUC2. The mucus of the small intestine has only one layer, whereas the large intestine has a two-layered mucus where the inner, attached layer has a protective function for the intestine, as it is impermeable to the luminal bacteria.
Subject(s)
Intestinal Mucosa/anatomy & histology , Intestinal Mucosa/chemistry , Intestinal Mucosa/metabolism , Animals , Enterocytes/chemistry , Enterocytes/cytology , Enterocytes/metabolism , Humans , Immunity, Mucosal/immunology , Intestinal Mucosa/microbiology , Intestines/anatomy & histology , Intestines/microbiology , Intestines/physiology , Models, Molecular , Mucins/chemistry , Mucins/metabolismABSTRACT
Astacins are secreted and membrane-bound metalloproteases with clear associations to many important pathological and physiological processes. Yet with only a few substrates described their biological roles are enigmatic. Moreover, the lack of knowledge of astacin cleavage site specificities hampers assay and drug development. Using PICS (proteomic identification of protease cleavage site specificity) and TAILS (terminal amine isotopic labeling of substrates) degradomics approaches >3000 cleavage sites were proteomically identified for five different astacins. Such broad coverage enables family-wide determination of specificities N- and C-terminal to the scissile peptide bond. Remarkably, meprin α, meprin ß, and LAST_MAM proteases exhibit a strong preference for aspartate in the peptide (P)1' position because of a conserved positively charged residue in the active cleft subsite (S)1'. This unparalleled specificity has not been found for other families of extracellular proteases. Interestingly, cleavage specificity is also strongly influenced by proline in P2' or P3' leading to a rare example of subsite cooperativity. This specificity characterizes the astacins as unique contributors to extracellular proteolysis that is corroborated by known cleavage sites in procollagen I+III, VEGF (vascular endothelial growth factor)-A, IL (interleukin)-1ß, and pro-kallikrein 7. Indeed, cleavage sites in VEGF-A and pro-kallikrein 7 identified by terminal amine isotopic labeling of substrates matched those reported by Edman degradation. Moreover, the novel substrate FGF-19 was validated biochemically and shown to exhibit altered biological activity after meprin processing.
Subject(s)
Enzyme Precursors/metabolism , Kallikreins/metabolism , Metalloendopeptidases/metabolism , Peptides/analysis , Proteomics/methods , Recombinant Proteins/metabolism , Staining and Labeling/methods , Tiopronin/metabolism , Vascular Endothelial Growth Factor A/metabolism , Amino Acid Sequence , Cell Line , Chromatography, Liquid , Enzyme Precursors/chemistry , Humans , Kallikreins/chemistry , Keratinocytes/cytology , Keratinocytes/metabolism , Kinetics , Metalloendopeptidases/chemistry , Models, Molecular , Molecular Sequence Data , Peptides/chemistry , Phylogeny , Proteolysis , Recombinant Proteins/chemistry , Sequence Alignment , Substrate Specificity , Tandem Mass Spectrometry , Tiopronin/chemistry , Vascular Endothelial Growth Factor A/chemistryABSTRACT
BACKGROUND: Meprin metalloproteases are thought to be involved in basic physiological functions such as cell proliferation and tissue differentiation. However, the specific functions of these enzymes are still ambiguous, although a variety of growth factors and structural proteins have been identified as meprin substrates. The discovery of meprins alpha(1), alpha(2) and beta in teleost fish provided the basis for uncovering their physiological functions by gene silencing in vivo. METHODOLOGY/PRINCIPAL FINDINGS: A Morpholino knockdown in zebrafish embryos targeting meprin alpha(1) and beta mRNA caused defects in general tissue differentiation. But meprin alpha(2) morphants were affected more specifically and showed severe failures in the formation of the vascular system provoking the hypothesis of a pro-angiogenic effect. The blood circulation was largely diminished resulting in erythrocyte accumulation. These phenotypes mimic a previously described VEGF-A morphant, revealing a possible role of meprin alpha in VEGF-A activation. Indeed, human recombinant meprin alpha processed the vascular endothelial growth factor-A (VEGF-A) specifically, revealing the same cleavage products detectable for VEGF from zebrafish whole lysate. CONCLUSIONS/SIGNIFICANCE: Our results demonstrate that meprin metalloproteases are important for cell differentiation and proliferation already during embryogenesis, predominantly by the activation of growth factors. Thus, we conclude that meprins play a significant role in VEGF-A processing, subsequently regulating angiogenesis. Therefore, meprin alpha might be a new therapeutic target in cardiovascular diseases or in tumor growth inhibition.
Subject(s)
Angiogenesis Inducing Agents , Gene Knockdown Techniques , Metalloendopeptidases/physiology , Morpholines/pharmacology , Zebrafish/embryology , Animals , Vascular Endothelial Growth Factor A/agonistsABSTRACT
In this work, we report the cloning, heterologous expression, and characterization of two novel astacin proteases from the chelicerate Limulus polyphemus (horseshoe crab), designated as LAST (Limulus astacin) and LAST_MAM (Limulus astacin containing a MAM domain), respectively. The expression pattern showed ubiquitous occurrence of LAST_MAM, while LAST was predominantly restricted to the eyes and brain, indicating a function in the nervous system. Both enzymes contain the characteristic metzincin-type zinc-binding region and Met turn. While LAST is made up only of the typical prodomain and astacin-like protease domain, LAST_MAM contains an additional MAM (meprin A5 protein tyrosine phosphatase micro) domain, which so far only has been found in few astacins such as the vertebrate meprin Hydra and squid enzymes, and in a number of other extracellular proteins such as A5 protein and tyrosine phosphatase micro. These gave rise to the designation MAM for this protein module. MAM domains have been shown to be responsible for protein oligomerization in meprin proteases and tyrosine phosphatase micro. Since the horseshoe crab has kept its body plan for almost half a billion years, it is therefore a privileged organism for the study of protease evolution. In this context, we could show by phylogenetic analysis that this protease is not related to the other MAM-domain-containing astacins indicating different evolutionary origins of these proteins. Moreover, we clearly demonstrated the divergent evolvement of the MAM module itself, and not only with regard to proteases. However, there are some unique functional features that are not shared by other members of this protein family. For example, LAST_MAM is the only astacin protease known so far that is active in its zymogen form, indicating that the presence of the N-terminal propeptide does not prevent proteolytic activity.
Subject(s)
Horseshoe Crabs/enzymology , Metalloendopeptidases/genetics , Metalloendopeptidases/metabolism , Amino Acid Sequence , Animals , Base Sequence , Caseins/metabolism , Cell Line , Cloning, Molecular , Collagen Type I/metabolism , DNA, Complementary/genetics , Evolution, Molecular , Extracellular Matrix Proteins/metabolism , Gene Expression Regulation, Enzymologic/drug effects , Hydroxamic Acids/pharmacology , Insecta/cytology , Metalloendopeptidases/antagonists & inhibitors , Metalloendopeptidases/chemistry , Models, Molecular , Molecular Sequence Data , Nervous System/enzymology , Oligopeptides/pharmacology , Phylogeny , Protein Processing, Post-Translational/drug effects , Protein Structure, Tertiary , RNA, Messenger/genetics , RNA, Messenger/metabolism , Structural Homology, ProteinABSTRACT
Meprins are members of the astacin family of metalloproteases expressed in epithelial tissues, intestinal leukocytes and certain cancer cells. In mammals, there are two homologous subunits, which form complex glycosylated disulfide-bonded homo- and heterooligomers. Both human meprin alpha and meprin beta cleave several basement membrane components, suggesting a role in epithelial differentiation and cell migration. There is also evidence that meprin beta is involved in immune defence owing to its capability of activating interleukin-1beta and the diminished mobility of intestinal leukocytes in meprin beta-knockout mice. Here we show for the first time by reverse transcription PCR, immunoblotting and immunofluorescence analyses that meprins are expressed not only in mammals, but also in the zebrafish Danio rerio. In contrast to the human, mouse and rat enzymes, zebrafish meprins are encoded by three genes, corresponding to two homologous alpha subunits and one beta subunit. Observations at both the mRNA and protein level indicate a broad distribution of meprins in zebrafish. However, there are strikingly different expression patterns of the three subunits, which is consistent with meprin expression in mammals. Hence, D. rerio appears to be a suitable model to gain insight into the basic physiological functions of meprin metalloproteases.